Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0011824

Physical Location & Seq

Genomic Coordinates Forward (+)

2018292 .. 2020829

Gene Structure 2538 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000010484

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1347 bp

ATGTCAACTGATACACTTTTGTTAGTCAATATTATGGGGAAACAATTGAGTTGGGGTGGCCTGATCAGATTGAGGGGAATGGTAATTATTCTGGGAGTTGCTCTAATTGGATATTTTGGGGTACTTGGGGAGGTTAACATGTTCTCTAAACAGAAGGTTTTGGAAGTTGAAAGAAAATTAAGCCAACTTAGGAAACCTGCAGTTAAAAGCATTCAGAGTGAAGATGGTGATATCATTGATTGCATTGACATTTACAAGCAGCCAGCATTTGATCATCCTGCTCTCAAAAACCACACCATCCAGATGGCACCTAGTTATGATCCAACAAAGGAGACAGAGTCGACAATGACCAAATTCGAAAGATTAGAGAGGAAGAGGAACCAACAATCTTCCATGATGGTGACACAACCATGGAAGAAGAATGGAAGCTGTCCACAAGGAACAATCCCGGTGCGAAGAATCAGAAAAGAGGACGTGCTCCGAGCTAGCTCGGTTGAGGCCTATGGAAGGAAGACACATAGCTCTTCTCGTCCTCATGTTTCGCATGAGTCTAGTACCAGTCACAGCAACAGAACTGTGAACGTTATACAAGCAAATCACTCGAAGGCAATATTGCTTACCGAAGGATACAGATATAATGGGGCCAAAGGAGATATCAAAGTTTGGACTCCTAATGTTGATTTTGATGATGATTACACTACTTCTAAAGTTTGCCTCATCAATGGTCCTTATTGGGCATTTGAGAGTGTTGAATCTGGATGGGCGGTGAATCCGAGTGTGTACGGAGACAGGCAAACTCGATTTATGGTGTATTGGACGGTCGATGGTTCAAAGAAAACAGGTTGCTTTGATCTCACTTGTCCTGGATTTGTTCAAACTAGCCATGAGATTGCTCTTGGTGCTGCAATTTACCCAATCTCTGTTCCTTACGGCCTTCCATACGAAATCATCGTCTATGTCTTCAAGGACCCCGTAACAAGCAATTGGTGGGTGCAATACGGGGAGAAAATCAACATCGGATACTGGCCACCGGAGCTGTTTATGGCGTTGCGTGTCCACGCAGAAGCGGTTGAGTGGGGAGGTGAAGTGTATAGTGCAAGAGTGGGTACTAATCCACACACAAAAACAGGAATGGGTAATGGAAACTTTCCTGATGGCATTTTTGGGGATTCAGGGGTCATTAAAAGAATCAGAATTCATGACAATTCAGCTGAACTCAAATTCCCGGAATGGGTTGAGACTTATGCGGACGAGTTCAACTGTTATGATGTTGATTATGTTTCCGATTACCTTGAAGATCCTGAGTTCTATTATGGAGGGCCTGGCCATAATCCCAAGTGCCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Neprosin Neprosin_AP

Protein Analysis

449

Amino Acids

50.55

Weight (kDa)

6.33

Isoelectric Point (pI)

30.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Neprosin_AP	PF14365	70 - 185	1.5e-40	Neprosin activation peptide
Neprosin	PF03080	230 - 441	2.7e-66	Neprosin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011824)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48230 AT5G19170
fragaria_vesca	FvH4_2g32290
prunus_persica	Prupe.1G415600_v2.0.a1 Prupe.1G415700_v2.0.a1 Prupe.1G415700_v2.0.a1 Prupe.1G415800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0310411
rosa_laevigata	RLG00000010484
rosa_multiflora	Rmu_co8348255.1_g000001 Rmu_sc0002896.1_g000001
rosa_roxburghii	Rroxscaffold_7G00158540
rosa_rugosa	Rorug06G0380000
rosa_samantha	Rh6AG494000 Rh6BG503700 Rh6CG508900 Rh6DG494900
rosa_wichuraiana	Rw2G024720 Rw6G042980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	205
AccB1I	GGYRCC	1 cut(s)	307
AccI	GTMKAC	1 cut(s)	341
AciI	CCGC	3 cut(s)	764, 1067, 1247
AclI	AACGTT	1 cut(s)	582
AclWI	GGATC	2 cut(s)	314, 1292
AcoI	YGGCCR	2 cut(s)	1025, 1324
AcsI	RAATTY	3 cut(s)	353, 1194, 1220
AfaI	GTAC	4 cut(s)	123, 556, 782, 1108
AfiI	CCNNNNNNNGG	2 cut(s)	507, 1231
AflIII	ACRYGT	1 cut(s)	138
AgsI	TTSAA	7 cut(s)	170, 752, 831, 875, 964, 1258, 1295
AjiI	CACGTC	1 cut(s)	475
AjnI	CCWGG	2 cut(s)	862, 1321
AloI	GAACNNNNNNTCC	2 cut(s)	1206, 1238
AluBI	AGCT	6 cut(s)	429, 485, 489, 522, 1036, 1211
AluI	AGCT	6 cut(s)	429, 485, 489, 522, 1036, 1211
Alw21I	GWGCWC	1 cut(s)	480
Alw26I	GTCTC	3 cut(s)	326, 780, 1232
AlwI	GGATC	2 cut(s)	314, 1292
AoxI	GGCC	7 cut(s)	58, 498, 642, 931, 1025, 1319, 1324
ApeKI	GCWGC	2 cut(s)	259, 902
ApoI	RAATTY	3 cut(s)	353, 1194, 1220
ArsI	GACNNNNNNTTYG	2 cut(s)	936, 968
AspS9I	GGNCC	4 cut(s)	642, 725, 967, 1319
AsuC2I	CCSGG	2 cut(s)	449, 1226
AsuHPI	GGTGA	4 cut(s)	239, 412, 778, 1094
AsuII	TTCGAA	1 cut(s)	357
AsuNHI	GCTAGC	1 cut(s)	485
AvaII	GGWCC	2 cut(s)	725, 967
BaeGI	GKGCMC	1 cut(s)	1343
BalI	TGGCCA	2 cut(s)	1027, 1326
BanI	GGYRCC	1 cut(s)	307
BbsI	GAAGAC	2 cut(s)	518, 952
Bbv12I	GWGCWC	1 cut(s)	480
BbvI	GCAGC	2 cut(s)	271, 889
BccI	CCATC	7 cut(s)	218, 298, 305, 391, 753, 818, 1148
BceAI	ACGGC	1 cut(s)	946
BcgI	CGANNNNNNTGC	2 cut(s)	582, 616
BciT130I	CCWGG	2 cut(s)	864, 1323
BciVI	GTATCC	2 cut(s)	620, 1013
BclI	TGATCA	2 cut(s)	63, 271
BcnI	CCSGG	2 cut(s)	449, 1226
BcoDI	GTCTC	3 cut(s)	326, 780, 1232
BfaI	CTAG	4 cut(s)	312, 486, 552, 879
BfmI	CTRYAG	1 cut(s)	198
BfuAI	ACCTGC	1 cut(s)	205
BfuI	GTATCC	2 cut(s)	620, 1013
BisI	GCNGC	2 cut(s)	260, 903
BlsI	GCNGC	2 cut(s)	261, 904
Bme1390I	CCNGG	4 cut(s)	449, 864, 1226, 1323
Bme18I	GGWCC	2 cut(s)	725, 967
BmgBI	CACGTC	1 cut(s)	475
BmgT120I	GGNCC	4 cut(s)	642, 725, 967, 1319
BmiI	GGNNCC	4 cut(s)	309, 380, 643, 969
BmrFI	CCNGG	4 cut(s)	449, 864, 1226, 1323
BmtI	GCTAGC	1 cut(s)	489
BpiI	GAAGAC	2 cut(s)	518, 952
Bpu14I	TTCGAA	1 cut(s)	357
BpuMI	CCSGG	2 cut(s)	449, 1226
BsaJI	CCNNGG	1 cut(s)	410
BsaWI	WCCGGW	1 cut(s)	1030
BsaXI	ACNNNNNCTCC	4 cut(s)	323, 353, 1071, 1101
Bsc4I	CCNNNNNNNGG	2 cut(s)	507, 1231
Bse1I	ACTGG	2 cut(s)	558, 1028
BseBI	CCWGG	2 cut(s)	864, 1323
BseDI	CCNNGG	1 cut(s)	410
BseGI	GGATG	3 cut(s)	274, 297, 764
BseLI	CCNNNNNNNGG	2 cut(s)	507, 1231
BseMII	CTCAG	1 cut(s)	1293
BseNI	ACTGG	2 cut(s)	558, 1028
BseSI	GKGCMC	1 cut(s)	1343
BseXI	GCAGC	2 cut(s)	271, 889
Bsh1285I	CGRYCG	1 cut(s)	822
BshFI	GGCC	7 cut(s)	60, 500, 644, 933, 1027, 1321, 1326
BshNI	GGYRCC	1 cut(s)	307
BsiEI	CGRYCG	1 cut(s)	822
BsiHKAI	GWGCWC	1 cut(s)	480
BsiSI	CCGG	3 cut(s)	449, 1031, 1226
BslI	CCNNNNNNNGG	2 cut(s)	507, 1231
BsmAI	GTCTC	3 cut(s)	326, 780, 1232
BsmI	GAATGC	1 cut(s)	210
BsnI	GGCC	7 cut(s)	60, 500, 644, 933, 1027, 1321, 1326
Bsp119I	TTCGAA	1 cut(s)	357
Bsp1286I	GDGCHC	2 cut(s)	480, 1343
Bsp143I	GATC	5 cut(s)	63, 271, 319, 850, 1297
Bsp19I	CCATGG	1 cut(s)	410
BspACI	CCGC	3 cut(s)	764, 1067, 1247
BspANI	GGCC	7 cut(s)	60, 500, 644, 933, 1027, 1321, 1326
BspCNI	CTCAG	1 cut(s)	1294
BspHI	TCATGA	1 cut(s)	1198
BspLI	GGNNCC	4 cut(s)	309, 380, 643, 969
BspMAI	CTGCAG	1 cut(s)	202
BspMI	ACCTGC	1 cut(s)	205
BspOI	GCTAGC	1 cut(s)	489
BspPI	GGATC	2 cut(s)	314, 1292
BspQI	GCTCTTC	1 cut(s)	529
BspT104I	TTCGAA	1 cut(s)	357
BspT107I	GGYRCC	1 cut(s)	307
BsrI	ACTGG	2 cut(s)	558, 1028
BssECI	CCNNGG	1 cut(s)	410
BssMI	GATC	5 cut(s)	63, 271, 319, 850, 1297
BssT1I	CCWWGG	1 cut(s)	410
Bst2UI	CCWGG	2 cut(s)	864, 1323
Bst4CI	ACNGT	3 cut(s)	577, 820, 1262
Bst6I	CTCTTC	2 cut(s)	368, 529
BstBI	TTCGAA	1 cut(s)	357
BstC8I	GCNNGC	2 cut(s)	264, 487
BstDEI	CTNAG	2 cut(s)	188, 1302
BstDSI	CCRYGG	1 cut(s)	410
BstENI	CCTNNNNNAGG	1 cut(s)	505
BstF5I	GGATG	3 cut(s)	274, 297, 764
BstKTI	GATC	5 cut(s)	66, 274, 322, 853, 1300
BstMAI	GTCTC	3 cut(s)	326, 780, 1232
BstMBI	GATC	5 cut(s)	63, 271, 319, 850, 1297
BstMCI	CGRYCG	1 cut(s)	822
BstMWI	GCNNNNNNNGC	2 cut(s)	899, 1033
BstNI	CCWGG	2 cut(s)	864, 1323
BstNSI	RCATGY	1 cut(s)	142
BstSCI	CCNGG	4 cut(s)	447, 862, 1224, 1321
BstSFI	CTRYAG	1 cut(s)	198
BstSLI	GKGCMC	1 cut(s)	1343
BstV1I	GCAGC	2 cut(s)	271, 889
BstV2I	GAAGAC	2 cut(s)	518, 952
BstX2I	RGATCY	1 cut(s)	1297
BstXI	CCANNNNNNTGG	1 cut(s)	304
BstYI	RGATCY	1 cut(s)	1297
BsuI	GTATCC	2 cut(s)	620, 1013
BsuRI	GGCC	7 cut(s)	60, 500, 644, 933, 1027, 1321, 1326
BtgI	CCRYGG	1 cut(s)	410
BtrI	CACGTC	1 cut(s)	475
BtsCI	GGATG	3 cut(s)	274, 297, 764
BveI	ACCTGC	1 cut(s)	205
Cac8I	GCNNGC	2 cut(s)	264, 487
CciI	TCATGA	1 cut(s)	1198
Cfr13I	GGNCC	4 cut(s)	642, 725, 967, 1319
Csp6I	GTAC	4 cut(s)	122, 555, 781, 1107
CviAII	CATG	7 cut(s)	139, 394, 411, 536, 545, 884, 1199
CviQI	GTAC	4 cut(s)	122, 555, 781, 1107
DdeI	CTNAG	2 cut(s)	188, 1302
DpnI	GATC	5 cut(s)	65, 273, 321, 852, 1299
DpnII	GATC	5 cut(s)	63, 271, 319, 850, 1297
EaeI	YGGCCR	2 cut(s)	1025, 1324
Eam1104I	CTCTTC	2 cut(s)	368, 529
EarI	CTCTTC	2 cut(s)	368, 529
Eco130I	CCWWGG	1 cut(s)	410
Eco147I	AGGCCT	1 cut(s)	500
Eco32I	GATATC	2 cut(s)	232, 655
Eco47I	GGWCC	2 cut(s)	725, 967
EcoNI	CCTNNNNNAGG	1 cut(s)	505
EcoO109I	RGGNCCY	2 cut(s)	967, 1319
EcoRI	GAATTC	1 cut(s)	1194
EcoRII	CCWGG	2 cut(s)	862, 1321
EcoRV	GATATC	2 cut(s)	232, 655
EcoT14I	CCWWGG	1 cut(s)	410
ErhI	CCWWGG	1 cut(s)	410
FaeI	CATG	7 cut(s)	142, 397, 414, 539, 548, 887, 1202
FatI	CATG	7 cut(s)	138, 393, 410, 535, 544, 883, 1198
FbaI	TGATCA	2 cut(s)	63, 271
FblI	GTMKAC	1 cut(s)	341
Fnu4HI	GCNGC	2 cut(s)	260, 903
FokI	GGATG	3 cut(s)	261, 284, 771
Fsp4HI	GCNGC	2 cut(s)	260, 903
FspBI	CTAG	4 cut(s)	312, 486, 552, 879
GluI	GCNGC	2 cut(s)	260, 903
HaeIII	GGCC	7 cut(s)	60, 500, 644, 933, 1027, 1321, 1326
HapII	CCGG	3 cut(s)	449, 1031, 1226
Hin1II	CATG	7 cut(s)	142, 397, 414, 539, 548, 887, 1202
HincII	GTYRAC	3 cut(s)	6, 136, 342
HindII	GTYRAC	3 cut(s)	6, 136, 342
HinfI	GANTC	8 cut(s)	338, 459, 548, 667, 752, 769, 1169, 1188
HpaI	GTTAAC	1 cut(s)	136
HpaII	CCGG	3 cut(s)	449, 1031, 1226
HphI	GGTGA	4 cut(s)	239, 412, 778, 1094
Hpy166II	GTNNAC	7 cut(s)	6, 136, 342, 434, 580, 781, 1057
Hpy188I	TCNGA	8 cut(s)	68, 216, 464, 482, 774, 1019, 1193, 1285
Hpy188III	TCNNGA	5 cut(s)	301, 756, 1151, 1199, 1301
Hpy8I	GTNNAC	7 cut(s)	6, 136, 342, 434, 580, 781, 1057
HpyAV	CCTTC	5 cut(s)	148, 501, 598, 617, 944
HpyCH4III	ACNGT	3 cut(s)	577, 820, 1262
HpyCH4IV	ACGT	2 cut(s)	474, 582
HpyCH4V	TGCA	5 cut(s)	200, 243, 905, 994, 1097
HpyF10VI	GCNNNNNNNGC	2 cut(s)	899, 1033
HpyF3I	CTNAG	2 cut(s)	188, 1302
HpySE526I	ACGT	2 cut(s)	474, 582
Hsp92II	CATG	7 cut(s)	142, 397, 414, 539, 548, 887, 1202
Ksp22I	TGATCA	2 cut(s)	63, 271
KspAI	GTTAAC	1 cut(s)	136
Kzo9I	GATC	5 cut(s)	63, 271, 319, 850, 1297
LguI	GCTCTTC	1 cut(s)	529
LmnI	GCTCC	2 cut(s)	483, 1033
Lsp1109I	GCAGC	2 cut(s)	271, 889
MaeI	CTAG	4 cut(s)	312, 486, 552, 879
MaeII	ACGT	2 cut(s)	474, 582
MaeIII	GTNAC	3 cut(s)	400, 560, 973
MalI	GATC	5 cut(s)	65, 273, 321, 852, 1299
MboI	GATC	5 cut(s)	63, 271, 319, 850, 1297
MfeI	CAATTG	2 cut(s)	44, 982
MflI	RGATCY	1 cut(s)	1297
MhlI	GDGCHC	2 cut(s)	480, 1343
MlsI	TGGCCA	2 cut(s)	1027, 1326
MluNI	TGGCCA	2 cut(s)	1027, 1326
MlyI	GAGTC	3 cut(s)	347, 557, 661
MmeI	TCCRAC	1 cut(s)	347
Mox20I	TGGCCA	2 cut(s)	1027, 1326
MscI	TGGCCA	2 cut(s)	1027, 1326
MseI	TTAA	5 cut(s)	135, 179, 204, 1182, 1345
MslI	CAYNNNNRTG	3 cut(s)	302, 398, 409
Msp20I	TGGCCA	2 cut(s)	1027, 1326
MspA1I	CMGCKG	1 cut(s)	1211
MspI	CCGG	3 cut(s)	449, 1031, 1226
MspR9I	CCNGG	4 cut(s)	449, 864, 1226, 1323
MunI	CAATTG	2 cut(s)	44, 982
Mva1269I	GAATGC	1 cut(s)	210
MvaI	CCWGG	2 cut(s)	864, 1323
MwoI	GCNNNNNNNGC	2 cut(s)	899, 1033
NciI	CCSGG	2 cut(s)	449, 1226
NcoI	CCATGG	1 cut(s)	410
NdeII	GATC	5 cut(s)	63, 271, 319, 850, 1297
NheI	GCTAGC	1 cut(s)	485
NlaIII	CATG	7 cut(s)	142, 397, 414, 539, 548, 887, 1202
NlaIV	GGNNCC	4 cut(s)	309, 380, 643, 969
NmuCI	GTSAC	2 cut(s)	400, 560
NspI	RCATGY	1 cut(s)	142
NspV	TTCGAA	1 cut(s)	357
PagI	TCATGA	1 cut(s)	1198
PceI	AGGCCT	1 cut(s)	500
PciI	ACATGT	1 cut(s)	138
PciSI	GCTCTTC	1 cut(s)	529
PcsI	WCGNNNNNNNCGW	1 cut(s)	948
PctI	GAATGC	1 cut(s)	210
PfeI	GAWTC	5 cut(s)	459, 752, 769, 1169, 1188
PflFI	GACNNNGTC	1 cut(s)	337
PfoI	TCCNGGA	2 cut(s)	862, 1224
PkrI	GCNGC	2 cut(s)	261, 904
PleI	GAGTC	3 cut(s)	346, 556, 661
PpsI	GAGTC	3 cut(s)	346, 556, 661
PpuMI	RGGWCCY	1 cut(s)	967
PscI	ACATGT	1 cut(s)	138
Psp1406I	AACGTT	1 cut(s)	582
Psp5II	RGGWCCY	1 cut(s)	967
Psp6I	CCWGG	2 cut(s)	862, 1321
PspGI	CCWGG	2 cut(s)	862, 1321
PspN4I	GGNNCC	4 cut(s)	309, 380, 643, 969
PspPI	GGNCC	4 cut(s)	642, 725, 967, 1319
PspPPI	RGGWCCY	1 cut(s)	967
PstI	CTGCAG	1 cut(s)	202
PsuI	RGATCY	1 cut(s)	1297
PsyI	GACNNNGTC	1 cut(s)	337
PvuII	CAGCTG	1 cut(s)	1211
RsaI	GTAC	4 cut(s)	123, 556, 782, 1108
RsaNI	GTAC	4 cut(s)	122, 555, 781, 1107
RseI	CAYNNNNRTG	3 cut(s)	302, 398, 409
SalI	GTCGAC	1 cut(s)	340
SapI	GCTCTTC	1 cut(s)	529
SaqAI	TTAA	5 cut(s)	135, 179, 204, 1182, 1345
SatI	GCNGC	2 cut(s)	260, 903
Sau3AI	GATC	5 cut(s)	63, 271, 319, 850, 1297
Sau96I	GGNCC	4 cut(s)	642, 725, 967, 1319
SchI	GAGTC	3 cut(s)	347, 557, 661
ScrFI	CCNGG	4 cut(s)	449, 864, 1226, 1323
SduI	GDGCHC	2 cut(s)	480, 1343
SfcI	CTRYAG	1 cut(s)	198
SfuI	TTCGAA	1 cut(s)	357
SinI	GGWCC	2 cut(s)	725, 967
SmiMI	CAYNNNNRTG	3 cut(s)	302, 398, 409
SseBI	AGGCCT	1 cut(s)	500
SsiI	CCGC	3 cut(s)	764, 1067, 1247
SspI	AATATT	2 cut(s)	31, 612
SspMI	CTAG	4 cut(s)	312, 486, 552, 879
StuI	AGGCCT	1 cut(s)	500
StyD4I	CCNGG	4 cut(s)	447, 862, 1224, 1321
StyI	CCWWGG	1 cut(s)	410
TaaI	ACNGT	3 cut(s)	577, 820, 1262
TaiI	ACGT	2 cut(s)	477, 585
TaqI	TCGA	5 cut(s)	341, 357, 602, 799, 822
TfiI	GAWTC	5 cut(s)	459, 752, 769, 1169, 1188
Tru1I	TTAA	5 cut(s)	135, 179, 204, 1182, 1345
Tru9I	TTAA	5 cut(s)	135, 179, 204, 1182, 1345
TseFI	GTSAC	2 cut(s)	400, 560
TseI	GCWGC	2 cut(s)	259, 902
Tsp45I	GTSAC	2 cut(s)	400, 560
TspDTI	ATGAA	1 cut(s)	1187
TspGWI	ACGGA	1 cut(s)	798
Tth111I	GACNNNGTC	1 cut(s)	337
VpaK11BI	GGWCC	2 cut(s)	725, 967
XagI	CCTNNNNNAGG	1 cut(s)	505
XapI	RAATTY	3 cut(s)	353, 1194, 1220
XceI	RCATGY	1 cut(s)	142
XmiI	GTMKAC	1 cut(s)	341
XspI	CTAG	4 cut(s)	312, 486, 552, 879

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.