AT3G48510

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0011674
Physical Location & Seq
Reverse (-)
17967354 .. 17968590
1237 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G48510.1

Sequence Viewer

Length: 885 bp
ATGGACGGTAGGGGAGGGTGTTGCATAGCTAGGTACGCCATTGGCTCTGGACCGTACGATCTTTCCAAAGCAGATCGCATCATGCTTCGATTTCGTCCCATTGCTCCTAAACCGGCCAGCCCCGGCGGAGTAAATCCCGTATCCAGCGGAGATAGCGGCGGCGGAAGCTCCGACGTTTCCTTTAGATCAGCTAGTAGAAGAAAGAGGAAATGTCATCAGCTGAAGGAGAATGGTGGTAACGCCAAGAGGTGCACCCGGCGGAAGACGTCGGATAAACCCGTCGTTCACGGCAGTGCTAATGCGGTGACTCTTTCTCTATTACCGGAGAAACCTATAGATCTTAAGGCGGCGGTGGAGAAGCAGAAGCGGCAGGGTCCGTTATGGTTGAGTTTCAAAGACGGCGGAGGGATGCTCACACCGGCTTATCAGACACCGGAGATTGTGCAGAGGACGGTGGTGATTTCGTCGTGTATGACGGTGGAGCGTGTAACGGACGCTTGGATTGACGGTTACGGTTTAGGGAGGTCAGATGAAGAAAGGAAGATGAATCTTGTGAGAGACACGTGTCCTGGTTTCATATCCGACGGTTCAGGGAGAGTCACGTGGACTAATGACGCGTATCGGAAGATGGCTAGGGATATTATTCCCGTGGAAGAAGGTGCACCGGAGATAACTAGCGGCGATAGTTTTCACGTGATCGTACGGTTGGTGATGAGGGAGAGGCCGATGCTAACGTCCCCTGGATTCACATGCAGAATGAAACTCCAGTACACGTGTCAAAATCGTGAGAGAGGCTCAGTCACGGTGCCTTGCGACGTGTGGAGAATGGACGTCGGTGGTGGTTTTGCTTGGAGGCTCGACGTTAAGGCCGCTTTGTGCCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

294

Amino Acids

32.22

Weight (kDa)

9.56

Isoelectric Point (pI)

46.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7950 PF25821 155 - 293 2.6e-46 Domain of unknown function (DUF7950)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011674)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G48510 AT5G50360 AT5G63350
fragaria_vesca FvH4_5g07700
malus_domestica MD06G1147800.v1.1 MD14G1162100.v1.1
prunus_persica Prupe.5G154700_v2.0.a1
pyrus_communis pycom14g13490 pycom72g00090
rosa_chinensis RchiOBHm_Chr7g0190771
rosa_laevigata RLG00000004500
rosa_multiflora Rmu_co8372469.1_g000001
rosa_roxburghii Rroxscaffold_3G00264340
rosa_rugosa Rorug06G0506700
rosa_samantha Rh7AG113400 Rh7BG115900 Rh7CG118400 Rh7DG117400
rosa_wichuraiana Rw7G009900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 269, 834
AccB1I GGYRCC 1 cut(s) 805
AccII CGCG 1 cut(s) 617
AcoI YGGCCR 1 cut(s) 114
AcuI CTGAAG 1 cut(s) 242
AcvI CACGTG 4 cut(s) 564, 603, 694, 774
AcyI GRCGYC 2 cut(s) 266, 831
AfaI GTAC 4 cut(s) 35, 56, 702, 770
AflII CTTAAG 1 cut(s) 341
AflIII ACRYGT 6 cut(s) 561, 563, 615, 771, 773, 816
AgsI TTSAA 1 cut(s) 394
AjiI CACGTC 1 cut(s) 817
AjnI CCWGG 2 cut(s) 568, 739
AleI CACNNNNGTG 1 cut(s) 291
AluBI AGCT 4 cut(s) 29, 168, 191, 220
AluI AGCT 4 cut(s) 29, 168, 191, 220
Alw21I GWGCWC 2 cut(s) 254, 664
Alw26I GTCTC 1 cut(s) 552
Alw44I GTGCAC 2 cut(s) 250, 660
AoxI GGCC 3 cut(s) 114, 722, 867
ApaLI GTGCAC 2 cut(s) 250, 660
AspS9I GGNCC 2 cut(s) 50, 374
AsuC2I CCSGG 2 cut(s) 123, 256
AsuHPI GGTGA 3 cut(s) 316, 469, 721
AvaII GGWCC 2 cut(s) 50, 374
BaeGI GKGCMC 2 cut(s) 254, 664
BanI GGYRCC 1 cut(s) 805
BbrPI CACGTG 4 cut(s) 564, 603, 694, 774
BbsI GAAGAC 1 cut(s) 269
Bbv12I GWGCWC 2 cut(s) 254, 664
BccI CCATC 1 cut(s) 622
BceAI ACGGC 2 cut(s) 304, 415
BciT130I CCWGG 2 cut(s) 570, 741
BciVI GTATCC 1 cut(s) 151
BcnI CCSGG 2 cut(s) 123, 256
BcoDI GTCTC 1 cut(s) 552
BfaI CTAG 4 cut(s) 30, 192, 633, 675
BfmI CTRYAG 1 cut(s) 333
BfrI CTTAAG 1 cut(s) 341
BfuI GTATCC 1 cut(s) 151
BglII AGATCT 1 cut(s) 337
BisI GCNGC 6 cut(s) 157, 160, 348, 368, 679, 870
BlsI GCNGC 6 cut(s) 158, 161, 349, 369, 680, 871
Bme1390I CCNGG 4 cut(s) 123, 256, 570, 741
Bme18I GGWCC 2 cut(s) 50, 374
BmgBI CACGTC 1 cut(s) 817
BmgT120I GGNCC 2 cut(s) 50, 374
BmiI GGNNCC 2 cut(s) 375, 807
BmrFI CCNGG 4 cut(s) 123, 256, 570, 741
BmsI GCATC 3 cut(s) 87, 399, 717
BoxI GACNNNNGTC 1 cut(s) 564
BpiI GAAGAC 1 cut(s) 269
BplI GAGNNNNNCTC 4 cut(s) 396, 428, 779, 811
BpmI CTGGAG 1 cut(s) 749
BpuMI CCSGG 2 cut(s) 123, 256
BsaAI YACGTR 4 cut(s) 564, 603, 694, 774
BsaHI GRCGYC 2 cut(s) 266, 831
BsaJI CCNNGG 3 cut(s) 121, 648, 739
BsaWI WCCGGW 3 cut(s) 322, 433, 664
Bse118I RCCGGY 2 cut(s) 112, 418
Bse1I ACTGG 1 cut(s) 766
Bse3DI GCAATG 1 cut(s) 99
BseBI CCWGG 2 cut(s) 570, 741
BseDI CCNNGG 3 cut(s) 121, 648, 739
BseGI GGATG 1 cut(s) 414
BseMI GCAATG 1 cut(s) 99
BseMII CTCAG 1 cut(s) 810
BseNI ACTGG 1 cut(s) 766
BseSI GKGCMC 2 cut(s) 254, 664
BsgI GTGCAG 1 cut(s) 464
Bsh1236I CGCG 1 cut(s) 617
BshFI GGCC 3 cut(s) 116, 724, 869
BshNI GGYRCC 1 cut(s) 805
BsiHKAI GWGCWC 2 cut(s) 254, 664
BsiSI CCGG 7 cut(s) 113, 123, 256, 323, 419, 434, 665
BsiWI CGTACG 2 cut(s) 54, 700
BslFI GGGAC 2 cut(s) 81, 721
BsmAI GTCTC 1 cut(s) 552
BsmFI GGGAC 2 cut(s) 81, 721
BsnI GGCC 3 cut(s) 116, 724, 869
Bsp1286I GDGCHC 2 cut(s) 254, 664
Bsp143I GATC 5 cut(s) 58, 73, 185, 337, 696
BspANI GGCC 3 cut(s) 116, 724, 869
BspCNI CTCAG 1 cut(s) 809
BspFNI CGCG 1 cut(s) 617
BspLI GGNNCC 2 cut(s) 375, 807
BspT107I GGYRCC 1 cut(s) 805
BspTI CTTAAG 1 cut(s) 341
BsrDI GCAATG 1 cut(s) 99
BsrFI RCCGGY 2 cut(s) 112, 418
BsrI ACTGG 1 cut(s) 766
BssAI RCCGGY 2 cut(s) 112, 418
BssECI CCNNGG 3 cut(s) 121, 648, 739
BssMI GATC 5 cut(s) 58, 73, 185, 337, 696
BssNI GRCGYC 2 cut(s) 266, 831
Bst2UI CCWGG 2 cut(s) 570, 741
Bst4CI ACNGT 9 cut(s) 8, 54, 454, 478, 509, 515, 587, 705, 805
BstACI GRCGYC 2 cut(s) 266, 831
BstAFI CTTAAG 1 cut(s) 341
BstBAI YACGTR 4 cut(s) 564, 603, 694, 774
BstC8I GCNNGC 1 cut(s) 118
BstDEI CTNAG 1 cut(s) 796
BstDSI CCRYGG 1 cut(s) 648
BstF5I GGATG 1 cut(s) 414
BstFNI CGCG 1 cut(s) 617
BstKTI GATC 5 cut(s) 61, 76, 188, 340, 699
BstMAI GTCTC 1 cut(s) 552
BstMBI GATC 5 cut(s) 58, 73, 185, 337, 696
BstMWI GCNNNNNNNGC 4 cut(s) 35, 153, 165, 367
BstNI CCWGG 2 cut(s) 570, 741
BstNSI RCATGY 1 cut(s) 753
BstPAI GACNNNNGTC 1 cut(s) 564
BstSCI CCNGG 4 cut(s) 121, 254, 568, 739
BstSFI CTRYAG 1 cut(s) 333
BstSLI GKGCMC 2 cut(s) 254, 664
BstUI CGCG 1 cut(s) 617
BstV2I GAAGAC 1 cut(s) 269
BstX2I RGATCY 1 cut(s) 337
BstYI RGATCY 1 cut(s) 337
BsuI GTATCC 1 cut(s) 151
BsuRI GGCC 3 cut(s) 116, 724, 869
BtgI CCRYGG 1 cut(s) 648
BtrI CACGTC 1 cut(s) 817
BtsCI GGATG 1 cut(s) 414
BtsI GCAGTG 1 cut(s) 298
BtsIMutI CAGTG 1 cut(s) 298
Cac8I GCNNGC 1 cut(s) 118
Cfr10I RCCGGY 2 cut(s) 112, 418
Cfr13I GGNCC 2 cut(s) 50, 374
CseI GACGC 2 cut(s) 503, 623
Csp6I GTAC 4 cut(s) 34, 55, 701, 769
CviAII CATG 2 cut(s) 82, 750
CviQI GTAC 4 cut(s) 34, 55, 701, 769
DdeI CTNAG 1 cut(s) 796
DpnI GATC 5 cut(s) 60, 75, 187, 339, 698
DpnII GATC 5 cut(s) 58, 73, 185, 337, 696
EaeI YGGCCR 1 cut(s) 114
EciI GGCGGA 4 cut(s) 141, 177, 274, 417
Eco47I GGWCC 2 cut(s) 50, 374
Eco57I CTGAAG 1 cut(s) 242
Eco72I CACGTG 4 cut(s) 564, 603, 694, 774
EcoRII CCWGG 2 cut(s) 568, 739
FaeI CATG 2 cut(s) 85, 753
FaiI YATR 7 cut(s) 26, 83, 335, 382, 473, 578, 751
FaqI GGGAC 2 cut(s) 81, 721
FatI CATG 2 cut(s) 81, 749
Fnu4HI GCNGC 6 cut(s) 157, 160, 348, 368, 679, 870
FokI GGATG 1 cut(s) 421
Fsp4HI GCNGC 6 cut(s) 157, 160, 348, 368, 679, 870
FspBI CTAG 4 cut(s) 30, 192, 633, 675
GluI GCNGC 6 cut(s) 157, 160, 348, 368, 679, 870
GsuI CTGGAG 1 cut(s) 749
HaeIII GGCC 3 cut(s) 116, 724, 869
HapII CCGG 7 cut(s) 113, 123, 256, 323, 419, 434, 665
HgaI GACGC 2 cut(s) 503, 623
Hin1I GRCGYC 2 cut(s) 266, 831
Hin1II CATG 2 cut(s) 85, 753
HinfI GANTC 4 cut(s) 307, 547, 597, 744
HpaII CCGG 7 cut(s) 113, 123, 256, 323, 419, 434, 665
HphI GGTGA 3 cut(s) 316, 469, 721
Hpy166II GTNNAC 5 cut(s) 252, 286, 606, 662, 771
Hpy188I TCNGA 6 cut(s) 172, 271, 429, 529, 583, 624
Hpy188III TCNNGA 2 cut(s) 48, 785
Hpy8I GTNNAC 5 cut(s) 252, 286, 606, 662, 771
Hpy99I CGWCG 8 cut(s) 176, 271, 284, 469, 587, 818, 836, 863
HpyAV CCTTC 2 cut(s) 217, 650
HpyCH4III ACNGT 9 cut(s) 8, 54, 454, 478, 509, 515, 587, 705, 805
HpyCH4V TGCA 5 cut(s) 24, 252, 445, 662, 753
HpyF10VI GCNNNNNNNGC 4 cut(s) 35, 153, 165, 367
HpyF3I CTNAG 1 cut(s) 796
Hsp92I GRCGYC 2 cut(s) 266, 831
Hsp92II CATG 2 cut(s) 85, 753
Kzo9I GATC 5 cut(s) 58, 73, 185, 337, 696
LmnI GCTCC 3 cut(s) 109, 173, 481
LweI GCATC 3 cut(s) 87, 399, 717
MaeI CTAG 4 cut(s) 30, 192, 633, 675
MaeIII GTNAC 6 cut(s) 236, 304, 487, 509, 598, 799
MalI GATC 5 cut(s) 60, 75, 187, 339, 698
MboI GATC 5 cut(s) 58, 73, 185, 337, 696
MboII GAAGA 6 cut(s) 210, 274, 545, 553, 637, 665
MflI RGATCY 1 cut(s) 337
MhlI GDGCHC 2 cut(s) 254, 664
MluI ACGCGT 1 cut(s) 615
MlyI GAGTC 2 cut(s) 301, 606
MmeI TCCRAC 3 cut(s) 195, 249, 606
MseI TTAA 2 cut(s) 342, 864
MslI CAYNNNNRTG 1 cut(s) 291
MspA1I CMGCKG 2 cut(s) 147, 220
MspCI CTTAAG 1 cut(s) 341
MspI CCGG 7 cut(s) 113, 123, 256, 323, 419, 434, 665
MspR9I CCNGG 4 cut(s) 123, 256, 570, 741
MvaI CCWGG 2 cut(s) 570, 741
MvnI CGCG 1 cut(s) 617
MwoI GCNNNNNNNGC 4 cut(s) 35, 153, 165, 367
NciI CCSGG 2 cut(s) 123, 256
NdeII GATC 5 cut(s) 58, 73, 185, 337, 696
NlaIII CATG 2 cut(s) 85, 753
NlaIV GGNNCC 2 cut(s) 375, 807
NmuCI GTSAC 3 cut(s) 304, 598, 799
NspI RCATGY 1 cut(s) 753
OliI CACNNNNGTG 1 cut(s) 291
PfeI GAWTC 2 cut(s) 547, 744
Pfl23II CGTACG 2 cut(s) 54, 700
PkrI GCNGC 6 cut(s) 158, 161, 349, 369, 680, 871
PleI GAGTC 2 cut(s) 301, 605
PmaCI CACGTG 4 cut(s) 564, 603, 694, 774
PmlI CACGTG 4 cut(s) 564, 603, 694, 774
PpsI GAGTC 2 cut(s) 301, 605
Ppu21I YACGTR 4 cut(s) 564, 603, 694, 774
PshAI GACNNNNGTC 1 cut(s) 564
Psp6I CCWGG 2 cut(s) 568, 739
PspCI CACGTG 4 cut(s) 564, 603, 694, 774
PspGI CCWGG 2 cut(s) 568, 739
PspLI CGTACG 2 cut(s) 54, 700
PspN4I GGNNCC 2 cut(s) 375, 807
PspPI GGNCC 2 cut(s) 50, 374
PsuI RGATCY 1 cut(s) 337
PvuII CAGCTG 1 cut(s) 220
RsaI GTAC 4 cut(s) 35, 56, 702, 770
RsaNI GTAC 4 cut(s) 34, 55, 701, 769
RseI CAYNNNNRTG 1 cut(s) 291
SaqAI TTAA 2 cut(s) 342, 864
SatI GCNGC 6 cut(s) 157, 160, 348, 368, 679, 870
Sau3AI GATC 5 cut(s) 58, 73, 185, 337, 696
Sau96I GGNCC 2 cut(s) 50, 374
SchI GAGTC 2 cut(s) 301, 606
ScrFI CCNGG 4 cut(s) 123, 256, 570, 741
SduI GDGCHC 2 cut(s) 254, 664
SfaNI GCATC 3 cut(s) 87, 399, 717
SfcI CTRYAG 1 cut(s) 333
SinI GGWCC 2 cut(s) 50, 374
SmiMI CAYNNNNRTG 1 cut(s) 291
SmlI CTYRAG 1 cut(s) 341
SmoI CTYRAG 1 cut(s) 341
SspMI CTAG 4 cut(s) 30, 192, 633, 675
StyD4I CCNGG 4 cut(s) 121, 254, 568, 739
TaaI ACNGT 9 cut(s) 8, 54, 454, 478, 509, 515, 587, 705, 805
TaqI TCGA 2 cut(s) 88, 858
TatI WGTACW 1 cut(s) 768
TauI GCSGC 6 cut(s) 159, 162, 350, 370, 681, 872
TfiI GAWTC 2 cut(s) 547, 744
Tru1I TTAA 2 cut(s) 342, 864
Tru9I TTAA 2 cut(s) 342, 864
TscAI CASTG 1 cut(s) 298
TseFI GTSAC 3 cut(s) 304, 598, 799
Tsp45I GTSAC 3 cut(s) 304, 598, 799
TspDTI ATGAA 4 cut(s) 546, 560, 565, 773
TspGWI ACGGA 2 cut(s) 366, 506
TspRI CASTG 1 cut(s) 298
Vha464I CTTAAG 1 cut(s) 341
VneI GTGCAC 2 cut(s) 250, 660
VpaK11BI GGWCC 2 cut(s) 50, 374
XceI RCATGY 1 cut(s) 753
XspI CTAG 4 cut(s) 30, 192, 633, 675
ZraI GACGTC 2 cut(s) 267, 832
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.