Rroxscaffold_3G00264340

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0011674
Physical Location & Seq
Forward (+)
58022152 .. 58022973
822 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00264340.1

Sequence Viewer

Length: 822 bp
ATGGACGGGAGAGGCGGTTGTTGTATAGCGAGGTATGGGGGAGGTGGTGGCGTTTATGATATGTCGAAGCTGGATAGAATAATGCTGAGATTCCGTCCAATCGCTCCGAAGCCGGTTGGAGGGTCAGTTTCCGGCGGATCTACGCCGGAGAATAGCGAGAACTGTAGAAGGGGAAAGAGAAGGTATGTCAGAGACAAGCGGTGCAATAACAGAAAGCGGAAGGCTTCTTCTCCGCCTGATAAGAAGAAAGGTGATGTCACTACTCTGTCGCTGTTGCCGGAGAGTCCGGAACCTAAGGACTCTCCGGAAGAGCGTAGCTCAGCCACGTGGCTGAGCTTCGAGAGTTTTTCCGGGAATACCGGTCCGGAGTATAAGGTGGTGAATTTGCCGGCTTGGCGGCCGGGGAGAGTGGTCGAGTCGTTCGTGACGGTGGACTGCGTCACCGATACGTGGGTGGAAGGAGGAGGACTGGGGTTTACGGACGAGGAGAGGAGGATGAGCCTGGAGACGGACACGTGTCCGGGGTTCTTATCGGACGGTTATTTTAGGGTTGTTTGGACGAACCGGGCGTACAGAAGCATGGTGGGTCAGGAGAACGAGACCGATGAGGTGACGGTGTGTTTGGTGGTGAAGGAGACAGCGTCTGTGACGGCGGTGGCCTTGGCTCACCCGGCGTTTGCGTGCAGAGTGAGAGTGCAGTACACGTGTGGATCCATCACGCTGCCGTGTGACGTGTGGAGAATGGAGGGAGGCGGGTTTGCGTGGCGGTTGGACGTGAAAGCTGCGCTGTGTCTGGGCCGGTATAGCACCAAAGCCGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

273

Amino Acids

30.02

Weight (kDa)

8.85

Isoelectric Point (pI)

46.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7950 PF25821 138 - 264 5.8e-49 Domain of unknown function (DUF7950)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011674)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G48510 AT5G50360 AT5G63350
fragaria_vesca FvH4_5g07700
malus_domestica MD06G1147800.v1.1 MD14G1162100.v1.1
prunus_persica Prupe.5G154700_v2.0.a1
pyrus_communis pycom14g13490 pycom72g00090
rosa_chinensis RchiOBHm_Chr7g0190771
rosa_laevigata RLG00000004500
rosa_multiflora Rmu_co8372469.1_g000001
rosa_roxburghii Rroxscaffold_3G00264340
rosa_rugosa Rorug06G0506700
rosa_samantha Rh7AG113400 Rh7BG115900 Rh7CG118400 Rh7DG117400
rosa_wichuraiana Rw7G009900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 3 cut(s) 286, 304, 364
AciI CCGC 9 cut(s) 15, 135, 199, 217, 233, 397, 653, 753, 766
AclWI GGATC 3 cut(s) 145, 705, 718
AcoI YGGCCR 1 cut(s) 398
AcsI RAATTY 1 cut(s) 382
AcvI CACGTG 3 cut(s) 327, 516, 705
AfaI GTAC 2 cut(s) 572, 701
AfiI CCNNNNNNNGG 3 cut(s) 119, 450, 508
AflIII ACRYGT 5 cut(s) 513, 515, 702, 704, 732
AgeI ACCGGT 1 cut(s) 359
AjiI CACGTC 2 cut(s) 733, 775
AjnI CCWGG 1 cut(s) 501
AluBI AGCT 4 cut(s) 70, 318, 336, 782
AluI AGCT 4 cut(s) 70, 318, 336, 782
Alw26I GTCTC 4 cut(s) 186, 500, 593, 629
AlwI GGATC 3 cut(s) 145, 705, 718
AlwNI CAGNNNCTG 1 cut(s) 644
Aor13HI TCCGGA 3 cut(s) 286, 304, 364
AoxI GGCC 3 cut(s) 398, 657, 796
ApeKI GCWGC 2 cut(s) 721, 782
ApoI RAATTY 1 cut(s) 382
ArsI GACNNNNNNTTYG 2 cut(s) 604, 636
AsiGI ACCGGT 1 cut(s) 359
AspLEI GCGC 1 cut(s) 787
AspS9I GGNCC 2 cut(s) 362, 796
AsuC2I CCSGG 5 cut(s) 352, 402, 522, 566, 671
AsuHPI GGTGA 6 cut(s) 263, 391, 433, 622, 640, 659
AvaII GGWCC 1 cut(s) 362
AxyI CCTNAGG 1 cut(s) 294
BaeI ACNNNNGTAYC 2 cut(s) 438, 471
BamHI GGATCC 1 cut(s) 710
BbrPI CACGTG 3 cut(s) 327, 516, 705
BbvI GCAGC 2 cut(s) 708, 769
BccI CCATC 1 cut(s) 722
BceAI ACGGC 3 cut(s) 666, 709, 800
BciT130I CCWGG 1 cut(s) 503
BcnI CCSGG 5 cut(s) 352, 402, 522, 566, 671
BcoDI GTCTC 4 cut(s) 186, 500, 593, 629
BfmI CTRYAG 1 cut(s) 163
BglI GCCNNNNNGGC 1 cut(s) 394
BisI GCNGC 3 cut(s) 398, 722, 783
BlpI GCTNAGC 2 cut(s) 319, 332
BlsI GCNGC 3 cut(s) 399, 723, 784
Bme1390I CCNGG 6 cut(s) 352, 402, 503, 522, 566, 671
Bme18I GGWCC 1 cut(s) 362
BmgBI CACGTC 2 cut(s) 733, 775
BmgT120I GGNCC 2 cut(s) 362, 796
BmiI GGNNCC 2 cut(s) 291, 712
BmrFI CCNGG 6 cut(s) 352, 402, 503, 522, 566, 671
BmrI ACTGGG 1 cut(s) 479
BmuI ACTGGG 1 cut(s) 479
BoxI GACNNNNGTC 1 cut(s) 516
BplI GAGNNNNNCTC 2 cut(s) 302, 334
BpmI CTGGAG 1 cut(s) 524
Bpu1102I GCTNAGC 2 cut(s) 319, 332
BpuMI CCSGG 5 cut(s) 352, 402, 522, 566, 671
BsaAI YACGTR 4 cut(s) 327, 450, 516, 705
BsaI GGTCTC 1 cut(s) 593
BsaJI CCNNGG 3 cut(s) 401, 521, 660
BsaWI WCCGGW 4 cut(s) 286, 304, 359, 364
BsaXI ACNNNNNCTCC 5 cut(s) 31, 111, 141, 626, 656
Bsc4I CCNNNNNNNGG 3 cut(s) 119, 450, 508
Bse118I RCCGGY 4 cut(s) 112, 359, 388, 798
Bse1I ACTGG 1 cut(s) 474
Bse21I CCTNAGG 1 cut(s) 294
BseAI TCCGGA 3 cut(s) 286, 304, 364
BseBI CCWGG 1 cut(s) 503
BseDI CCNNGG 3 cut(s) 401, 521, 660
BseGI GGATG 1 cut(s) 501
BseLI CCNNNNNNNGG 3 cut(s) 119, 450, 508
BseMII CTCAG 3 cut(s) 77, 323, 333
BseNI ACTGG 1 cut(s) 474
BseRI GAGGAG 3 cut(s) 477, 500, 505
BseX3I CGGCCG 1 cut(s) 398
BseXI GCAGC 2 cut(s) 708, 769
BsgI GTGCAG 2 cut(s) 703, 716
Bsh1285I CGRYCG 1 cut(s) 401
BshFI GGCC 3 cut(s) 400, 659, 798
BshTI ACCGGT 1 cut(s) 359
BsiEI CGRYCG 1 cut(s) 401
BslI CCNNNNNNNGG 3 cut(s) 119, 450, 508
BsmAI GTCTC 4 cut(s) 186, 500, 593, 629
BsmBI CGTCTC 1 cut(s) 500
BsnI GGCC 3 cut(s) 400, 659, 798
Bso31I GGTCTC 1 cut(s) 593
Bsp13I TCCGGA 3 cut(s) 286, 304, 364
Bsp143I GATC 2 cut(s) 137, 710
Bsp1720I GCTNAGC 2 cut(s) 319, 332
BspACI CCGC 9 cut(s) 15, 135, 199, 217, 233, 397, 653, 753, 766
BspANI GGCC 3 cut(s) 400, 659, 798
BspCNI CTCAG 3 cut(s) 78, 324, 332
BspEI TCCGGA 3 cut(s) 286, 304, 364
BspLI GGNNCC 2 cut(s) 291, 712
BspPI GGATC 3 cut(s) 145, 705, 718
BspQI GCTCTTC 1 cut(s) 303
BspTNI GGTCTC 1 cut(s) 593
BsrFI RCCGGY 4 cut(s) 112, 359, 388, 798
BsrI ACTGG 1 cut(s) 474
BssAI RCCGGY 4 cut(s) 112, 359, 388, 798
BssECI CCNNGG 3 cut(s) 401, 521, 660
BssMI GATC 2 cut(s) 137, 710
BssT1I CCWWGG 1 cut(s) 660
Bst2UI CCWGG 1 cut(s) 503
Bst4CI ACNGT 4 cut(s) 164, 430, 539, 616
Bst6I CTCTTC 1 cut(s) 303
BstBAI YACGTR 4 cut(s) 327, 450, 516, 705
BstC8I GCNNGC 2 cut(s) 390, 682
BstDEI CTNAG 4 cut(s) 86, 294, 319, 332
BstF5I GGATG 1 cut(s) 501
BstHHI GCGC 1 cut(s) 787
BstKTI GATC 2 cut(s) 140, 713
BstMAI GTCTC 4 cut(s) 186, 500, 593, 629
BstMBI GATC 2 cut(s) 137, 710
BstMCI CGRYCG 1 cut(s) 401
BstMWI GCNNNNNNNGC 3 cut(s) 394, 671, 804
BstNI CCWGG 1 cut(s) 503
BstPAI GACNNNNGTC 1 cut(s) 516
BstSCI CCNGG 6 cut(s) 350, 400, 501, 520, 564, 669
BstSFI CTRYAG 1 cut(s) 163
BstV1I GCAGC 2 cut(s) 708, 769
BstX2I RGATCY 2 cut(s) 137, 710
BstYI RGATCY 2 cut(s) 137, 710
BstZI CGGCCG 1 cut(s) 398
Bsu36I CCTNAGG 1 cut(s) 294
BsuRI GGCC 3 cut(s) 400, 659, 798
BtrI CACGTC 2 cut(s) 733, 775
BtsCI GGATG 1 cut(s) 501
Cac8I GCNNGC 2 cut(s) 390, 682
CaiI CAGNNNCTG 1 cut(s) 644
CfoI GCGC 1 cut(s) 787
Cfr10I RCCGGY 4 cut(s) 112, 359, 388, 798
Cfr13I GGNCC 2 cut(s) 362, 796
CpoI CGGWCCG 1 cut(s) 362
CseI GACGC 2 cut(s) 427, 630
Csp6I GTAC 2 cut(s) 571, 700
CspAI ACCGGT 1 cut(s) 359
CspI CGGWCCG 1 cut(s) 362
CviAII CATG 1 cut(s) 580
CviQI GTAC 2 cut(s) 571, 700
DdeI CTNAG 4 cut(s) 86, 294, 319, 332
DpnI GATC 2 cut(s) 139, 712
DpnII GATC 2 cut(s) 137, 710
EaeI YGGCCR 1 cut(s) 398
EagI CGGCCG 1 cut(s) 398
Eam1104I CTCTTC 1 cut(s) 303
EarI CTCTTC 1 cut(s) 303
EciI GGCGGA 2 cut(s) 150, 222
EclXI CGGCCG 1 cut(s) 398
Eco130I CCWWGG 1 cut(s) 660
Eco31I GGTCTC 1 cut(s) 593
Eco47I GGWCC 1 cut(s) 362
Eco52I CGGCCG 1 cut(s) 398
Eco72I CACGTG 3 cut(s) 327, 516, 705
Eco81I CCTNAGG 1 cut(s) 294
EcoRII CCWGG 1 cut(s) 501
EcoT14I CCWWGG 1 cut(s) 660
ErhI CCWWGG 1 cut(s) 660
Esp3I CGTCTC 1 cut(s) 500
FaeI CATG 1 cut(s) 583
FaiI YATR 9 cut(s) 26, 36, 57, 62, 186, 372, 581, 804, 820
FatI CATG 1 cut(s) 579
FauI CCCGC 1 cut(s) 746
Fnu4HI GCNGC 3 cut(s) 398, 722, 783
FokI GGATG 1 cut(s) 508
Fsp4HI GCNGC 3 cut(s) 398, 722, 783
GlaI GCGC 1 cut(s) 786
GluI GCNGC 3 cut(s) 398, 722, 783
GsuI CTGGAG 1 cut(s) 524
HaeIII GGCC 3 cut(s) 400, 659, 798
HgaI GACGC 2 cut(s) 427, 630
HhaI GCGC 1 cut(s) 787
Hin1II CATG 1 cut(s) 583
Hin6I GCGC 1 cut(s) 785
HinP1I GCGC 1 cut(s) 785
HinfI GANTC 4 cut(s) 90, 283, 299, 416
HphI GGTGA 6 cut(s) 263, 391, 433, 622, 640, 659
Hpy166II GTNNAC 3 cut(s) 433, 477, 702
Hpy188I TCNGA 3 cut(s) 108, 191, 535
Hpy188III TCNNGA 6 cut(s) 287, 305, 340, 365, 424, 590
Hpy8I GTNNAC 3 cut(s) 433, 477, 702
HpyAV CCTTC 5 cut(s) 162, 174, 214, 452, 625
HpyCH4III ACNGT 4 cut(s) 164, 430, 539, 616
HpyCH4IV ACGT 6 cut(s) 326, 449, 515, 704, 732, 774
HpyCH4V TGCA 3 cut(s) 204, 684, 697
HpyF10VI GCNNNNNNNGC 3 cut(s) 394, 671, 804
HpyF3I CTNAG 4 cut(s) 86, 294, 319, 332
HpySE526I ACGT 6 cut(s) 326, 449, 515, 704, 732, 774
Hsp92II CATG 1 cut(s) 583
HspAI GCGC 1 cut(s) 785
Kpn2I TCCGGA 3 cut(s) 286, 304, 364
KroI GCCGGC 1 cut(s) 388
KroNI GCCGGC 1 cut(s) 390
Kzo9I GATC 2 cut(s) 137, 710
LguI GCTCTTC 1 cut(s) 303
LmnI GCTCC 1 cut(s) 109
Lsp1109I GCAGC 2 cut(s) 708, 769
MaeII ACGT 6 cut(s) 326, 449, 515, 704, 732, 774
MaeIII GTNAC 6 cut(s) 256, 424, 439, 610, 646, 728
MalI GATC 2 cut(s) 139, 712
MboI GATC 2 cut(s) 137, 710
MboII GAAGA 3 cut(s) 219, 256, 320
MflI RGATCY 2 cut(s) 137, 710
MluCI AATT 1 cut(s) 382
MlyI GAGTC 3 cut(s) 292, 293, 425
MmeI TCCRAC 2 cut(s) 97, 750
MroI TCCGGA 3 cut(s) 286, 304, 364
MroNI GCCGGC 1 cut(s) 388
MspR9I CCNGG 6 cut(s) 352, 402, 503, 522, 566, 671
MvaI CCWGG 1 cut(s) 503
MwoI GCNNNNNNNGC 3 cut(s) 394, 671, 804
NaeI GCCGGC 1 cut(s) 390
NciI CCSGG 5 cut(s) 352, 402, 522, 566, 671
NdeII GATC 2 cut(s) 137, 710
NgoMIV GCCGGC 1 cut(s) 388
NlaIII CATG 1 cut(s) 583
NlaIV GGNNCC 2 cut(s) 291, 712
NmuCI GTSAC 6 cut(s) 256, 424, 439, 610, 646, 728
PciSI GCTCTTC 1 cut(s) 303
PcsI WCGNNNNNNNCGW 2 cut(s) 420, 566
PdiI GCCGGC 1 cut(s) 390
PfeI GAWTC 1 cut(s) 90
PflFI GACNNNGTC 2 cut(s) 437, 640
PfoI TCCNGGA 1 cut(s) 350
PinAI ACCGGT 1 cut(s) 359
PkrI GCNGC 3 cut(s) 399, 723, 784
PleI GAGTC 3 cut(s) 291, 293, 424
PmaCI CACGTG 3 cut(s) 327, 516, 705
PmlI CACGTG 3 cut(s) 327, 516, 705
PpsI GAGTC 3 cut(s) 291, 293, 424
Ppu21I YACGTR 4 cut(s) 327, 450, 516, 705
PshAI GACNNNNGTC 1 cut(s) 516
Psp6I CCWGG 1 cut(s) 501
PspCI CACGTG 3 cut(s) 327, 516, 705
PspGI CCWGG 1 cut(s) 501
PspN4I GGNNCC 2 cut(s) 291, 712
PspPI GGNCC 2 cut(s) 362, 796
PsrI GAACNNNNNNTAC 2 cut(s) 554, 586
PstNI CAGNNNCTG 1 cut(s) 644
PsuI RGATCY 2 cut(s) 137, 710
PsyI GACNNNGTC 2 cut(s) 437, 640
RsaI GTAC 2 cut(s) 572, 701
RsaNI GTAC 2 cut(s) 571, 700
Rsr2I CGGWCCG 1 cut(s) 362
RsrII CGGWCCG 1 cut(s) 362
SapI GCTCTTC 1 cut(s) 303
SatI GCNGC 3 cut(s) 398, 722, 783
Sau3AI GATC 2 cut(s) 137, 710
Sau96I GGNCC 2 cut(s) 362, 796
SchI GAGTC 3 cut(s) 292, 293, 425
ScrFI CCNGG 6 cut(s) 352, 402, 503, 522, 566, 671
SfcI CTRYAG 1 cut(s) 163
SinI GGWCC 1 cut(s) 362
Sse9I AATT 1 cut(s) 382
SsiI CCGC 9 cut(s) 15, 135, 199, 217, 233, 397, 653, 753, 766
StyD4I CCNGG 6 cut(s) 350, 400, 501, 520, 564, 669
StyI CCWWGG 1 cut(s) 660
TaaI ACNGT 4 cut(s) 164, 430, 539, 616
TaiI ACGT 6 cut(s) 329, 452, 518, 707, 735, 777
TaqI TCGA 3 cut(s) 65, 339, 414
TaqII GACCGA 1 cut(s) 617
TasI AATT 1 cut(s) 382
TatI WGTACW 1 cut(s) 699
TauI GCSGC 1 cut(s) 400
TfiI GAWTC 1 cut(s) 90
TseFI GTSAC 6 cut(s) 256, 424, 439, 610, 646, 728
TseI GCWGC 2 cut(s) 721, 782
Tsp45I GTSAC 6 cut(s) 256, 424, 439, 610, 646, 728
TspGWI ACGGA 3 cut(s) 83, 494, 524
Tth111I GACNNNGTC 2 cut(s) 437, 640
VpaK11BI GGWCC 1 cut(s) 362
XapI RAATTY 1 cut(s) 382
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.