Rh7BG115900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0011674
Physical Location & Seq
Reverse (-)
8659277 .. 8661602
2326 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG115900.1

Sequence Viewer

Length: 825 bp
ATGGACGGGAGAGGCGGTTGTTGTATAGCGAGGTATGGGGGAGGTGGTGGCGTTTATGATATGTCGAAGCTGGATAGAATAATGCTGAGATTCCGTCCAATCGCTCCGAAGCCGGTTGGAGGGTCAGTCTCCGGCGGATCTACGCCGGAGAATAGCGAGAACTGTAGAAGGGGAAAGAGATCAAGGTATGTGAGAGACAAGCGGTGCAATAACAGAAAGCGGAAGGCTTCTTCTCCGCCTGATAAGAAGAAAGGTGCTGTCACTACTCTGTCGCTGTTGCCGGAGAGTCCGGAACCTAAGGACTCTCCGGAAGAGCGTAGCTCAGCCACGTGGCCGAGCTTCGAGATTTTTCCCGGGAATACCGGTCCGGAGTATAAGGTGGTGAACATGCCGGCTTTGCGGCCGGTGAGAGTGGTCGAGTCGTACGTGACGGTGGACTGCGTCACCGATACGTGGGTGGAAGGAGCGGGACTGGGGTTTACCGACGAGGAGAGGAGGATGAGCCTGGAGACGGACACGTGTCCGGGGTTCTTATCGGACGGTTATTGTAGGGTTGTTTGGACGAACCGGGCGTACAGAAGCATGGTGGGTCAGGAGAACGAGACGGATGAGGTGACGGTGTGTCTGGTGGTGAAGGAGACGGCGTCTGTGATGGCGGTGGCCTTCGCTCACCCGGCGTTTACGTGCAGAGTGAGAGTGCAGTACACGTGTGGATCCATCACGCTGCCTTGTGACGTGTGGAGAATGGAGGGAGGCGGGTTTGCGTGGCGGTTGGACGTGAAAGCTGCGCTGTGTCTGGGCCGGTATAGCACCAAAGCCGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

274

Amino Acids

30.15

Weight (kDa)

8.9

Isoelectric Point (pI)

47.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7950 PF25821 139 - 265 5.2e-49 Domain of unknown function (DUF7950)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011674)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G48510 AT5G50360 AT5G63350
fragaria_vesca FvH4_5g07700
malus_domestica MD06G1147800.v1.1 MD14G1162100.v1.1
prunus_persica Prupe.5G154700_v2.0.a1
pyrus_communis pycom14g13490 pycom72g00090
rosa_chinensis RchiOBHm_Chr7g0190771
rosa_laevigata RLG00000004500
rosa_multiflora Rmu_co8372469.1_g000001
rosa_roxburghii Rroxscaffold_3G00264340
rosa_rugosa Rorug06G0506700
rosa_samantha Rh7AG113400 Rh7BG115900 Rh7CG118400 Rh7DG117400
rosa_wichuraiana Rw7G009900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 467
AccIII TCCGGA 3 cut(s) 289, 307, 367
AclWI GGATC 3 cut(s) 145, 708, 721
AcoI YGGCCR 2 cut(s) 332, 401
AcvI CACGTG 3 cut(s) 330, 519, 708
AcyI GRCGYC 1 cut(s) 644
AfaI GTAC 3 cut(s) 425, 575, 704
AfiI CCNNNNNNNGG 3 cut(s) 119, 453, 511
AflIII ACRYGT 5 cut(s) 516, 518, 705, 707, 735
AgeI ACCGGT 1 cut(s) 362
AhdI GACNNNNNGTC 1 cut(s) 621
AjiI CACGTC 2 cut(s) 736, 778
AjnI CCWGG 1 cut(s) 504
AluBI AGCT 4 cut(s) 70, 321, 339, 785
AluI AGCT 4 cut(s) 70, 321, 339, 785
Alw26I GTCTC 5 cut(s) 133, 189, 503, 596, 632
AlwI GGATC 3 cut(s) 145, 708, 721
Ama87I CYCGRG 1 cut(s) 353
Aor13HI TCCGGA 3 cut(s) 289, 307, 367
AoxI GGCC 4 cut(s) 332, 401, 660, 799
ApeKI GCWGC 2 cut(s) 724, 785
AsiGI ACCGGT 1 cut(s) 362
AspLEI GCGC 1 cut(s) 790
AspS9I GGNCC 2 cut(s) 365, 799
AsuC2I CCSGG 5 cut(s) 354, 355, 525, 569, 674
AsuHPI GGTGA 6 cut(s) 394, 418, 436, 625, 643, 662
AvaI CYCGRG 1 cut(s) 353
AvaII GGWCC 1 cut(s) 365
AxyI CCTNAGG 1 cut(s) 297
BaeI ACNNNNGTAYC 2 cut(s) 441, 474
BamHI GGATCC 1 cut(s) 713
BbrPI CACGTG 3 cut(s) 330, 519, 708
BbvI GCAGC 2 cut(s) 711, 772
BccI CCATC 2 cut(s) 646, 725
BceAI ACGGC 2 cut(s) 657, 803
BciT130I CCWGG 1 cut(s) 506
BcnI CCSGG 5 cut(s) 354, 355, 525, 569, 674
BcoDI GTCTC 5 cut(s) 133, 189, 503, 596, 632
BfmI CTRYAG 1 cut(s) 163
BisI GCNGC 3 cut(s) 401, 725, 786
BlpI GCTNAGC 1 cut(s) 322
BlsI GCNGC 3 cut(s) 402, 726, 787
Bme1390I CCNGG 6 cut(s) 354, 355, 506, 525, 569, 674
Bme18I GGWCC 1 cut(s) 365
BmeRI GACNNNNNGTC 1 cut(s) 621
BmeT110I CYCGRG 1 cut(s) 353
BmgBI CACGTC 2 cut(s) 736, 778
BmgT120I GGNCC 2 cut(s) 365, 799
BmiI GGNNCC 2 cut(s) 294, 715
BmrFI CCNGG 6 cut(s) 354, 355, 506, 525, 569, 674
BmrI ACTGGG 1 cut(s) 482
BmuI ACTGGG 1 cut(s) 482
BoxI GACNNNNGTC 1 cut(s) 519
BplI GAGNNNNNCTC 2 cut(s) 305, 337
BpmI CTGGAG 1 cut(s) 527
Bpu1102I GCTNAGC 1 cut(s) 322
BpuMI CCSGG 5 cut(s) 354, 355, 525, 569, 674
BsaAI YACGTR 6 cut(s) 330, 427, 453, 519, 684, 708
BsaHI GRCGYC 1 cut(s) 644
BsaJI CCNNGG 2 cut(s) 353, 524
BsaWI WCCGGW 4 cut(s) 289, 307, 362, 367
BsaXI ACNNNNNCTCC 5 cut(s) 31, 111, 141, 629, 659
Bsc4I CCNNNNNNNGG 3 cut(s) 119, 453, 511
Bse118I RCCGGY 5 cut(s) 112, 362, 391, 403, 801
Bse1I ACTGG 1 cut(s) 477
Bse21I CCTNAGG 1 cut(s) 297
BseAI TCCGGA 3 cut(s) 289, 307, 367
BseBI CCWGG 1 cut(s) 506
BseDI CCNNGG 2 cut(s) 353, 524
BseGI GGATG 2 cut(s) 504, 613
BseLI CCNNNNNNNGG 3 cut(s) 119, 453, 511
BseMII CTCAG 2 cut(s) 77, 336
BseNI ACTGG 1 cut(s) 477
BseRI GAGGAG 2 cut(s) 503, 508
BseX3I CGGCCG 1 cut(s) 401
BseXI GCAGC 2 cut(s) 711, 772
BsgI GTGCAG 2 cut(s) 706, 719
Bsh1285I CGRYCG 1 cut(s) 404
BshFI GGCC 4 cut(s) 334, 403, 662, 801
BshTI ACCGGT 1 cut(s) 362
BsiEI CGRYCG 1 cut(s) 404
BsiHKCI CYCGRG 1 cut(s) 353
BsiWI CGTACG 1 cut(s) 423
BslFI GGGAC 1 cut(s) 483
BslI CCNNNNNNNGG 3 cut(s) 119, 453, 511
BsmAI GTCTC 5 cut(s) 133, 189, 503, 596, 632
BsmBI CGTCTC 3 cut(s) 503, 596, 632
BsmFI GGGAC 1 cut(s) 483
BsnI GGCC 4 cut(s) 334, 403, 662, 801
BsoBI CYCGRG 1 cut(s) 353
Bsp13I TCCGGA 3 cut(s) 289, 307, 367
Bsp143I GATC 3 cut(s) 137, 179, 713
Bsp1720I GCTNAGC 1 cut(s) 322
BspANI GGCC 4 cut(s) 334, 403, 662, 801
BspCNI CTCAG 2 cut(s) 78, 335
BspEI TCCGGA 3 cut(s) 289, 307, 367
BspLI GGNNCC 2 cut(s) 294, 715
BspPI GGATC 3 cut(s) 145, 708, 721
BspQI GCTCTTC 1 cut(s) 306
BsrBI CCGCTC 1 cut(s) 467
BsrFI RCCGGY 5 cut(s) 112, 362, 391, 403, 801
BsrI ACTGG 1 cut(s) 477
BssAI RCCGGY 5 cut(s) 112, 362, 391, 403, 801
BssECI CCNNGG 2 cut(s) 353, 524
BssMI GATC 3 cut(s) 137, 179, 713
BssNI GRCGYC 1 cut(s) 644
Bst2UI CCWGG 1 cut(s) 506
Bst4CI ACNGT 4 cut(s) 164, 433, 542, 619
Bst6I CTCTTC 1 cut(s) 306
BstACI GRCGYC 1 cut(s) 644
BstBAI YACGTR 6 cut(s) 330, 427, 453, 519, 684, 708
BstC8I GCNNGC 1 cut(s) 393
BstDEI CTNAG 3 cut(s) 86, 297, 322
BstF5I GGATG 2 cut(s) 504, 613
BstHHI GCGC 1 cut(s) 790
BstKTI GATC 3 cut(s) 140, 182, 716
BstMAI GTCTC 5 cut(s) 133, 189, 503, 596, 632
BstMBI GATC 3 cut(s) 137, 179, 713
BstMCI CGRYCG 1 cut(s) 404
BstMWI GCNNNNNNNGC 3 cut(s) 397, 674, 807
BstNI CCWGG 1 cut(s) 506
BstNSI RCATGY 1 cut(s) 391
BstPAI GACNNNNGTC 1 cut(s) 519
BstSCI CCNGG 6 cut(s) 352, 353, 504, 523, 567, 672
BstSFI CTRYAG 1 cut(s) 163
BstV1I GCAGC 2 cut(s) 711, 772
BstX2I RGATCY 2 cut(s) 137, 713
BstYI RGATCY 2 cut(s) 137, 713
BstZI CGGCCG 1 cut(s) 401
Bsu36I CCTNAGG 1 cut(s) 297
BsuRI GGCC 4 cut(s) 334, 403, 662, 801
BtrI CACGTC 2 cut(s) 736, 778
BtsCI GGATG 2 cut(s) 504, 613
Cac8I GCNNGC 1 cut(s) 393
CfoI GCGC 1 cut(s) 790
Cfr10I RCCGGY 5 cut(s) 112, 362, 391, 403, 801
Cfr13I GGNCC 2 cut(s) 365, 799
Cfr9I CCCGGG 1 cut(s) 353
CpoI CGGWCCG 1 cut(s) 365
CseI GACGC 2 cut(s) 430, 633
Csp6I GTAC 3 cut(s) 424, 574, 703
CspAI ACCGGT 1 cut(s) 362
CspI CGGWCCG 1 cut(s) 365
CviAII CATG 2 cut(s) 388, 583
CviQI GTAC 3 cut(s) 424, 574, 703
DdeI CTNAG 3 cut(s) 86, 297, 322
DpnI GATC 3 cut(s) 139, 181, 715
DpnII GATC 3 cut(s) 137, 179, 713
DriI GACNNNNNGTC 1 cut(s) 621
EaeI YGGCCR 2 cut(s) 332, 401
EagI CGGCCG 1 cut(s) 401
Eam1104I CTCTTC 1 cut(s) 306
Eam1105I GACNNNNNGTC 1 cut(s) 621
EarI CTCTTC 1 cut(s) 306
EciI GGCGGA 2 cut(s) 150, 225
EclXI CGGCCG 1 cut(s) 401
Eco47I GGWCC 1 cut(s) 365
Eco52I CGGCCG 1 cut(s) 401
Eco72I CACGTG 3 cut(s) 330, 519, 708
Eco81I CCTNAGG 1 cut(s) 297
Eco88I CYCGRG 1 cut(s) 353
EcoRII CCWGG 1 cut(s) 504
Esp3I CGTCTC 3 cut(s) 503, 596, 632
FaeI CATG 2 cut(s) 391, 586
FaqI GGGAC 1 cut(s) 483
FatI CATG 2 cut(s) 387, 582
FauI CCCGC 2 cut(s) 460, 749
Fnu4HI GCNGC 3 cut(s) 401, 725, 786
FokI GGATG 2 cut(s) 511, 620
Fsp4HI GCNGC 3 cut(s) 401, 725, 786
GlaI GCGC 1 cut(s) 789
GluI GCNGC 3 cut(s) 401, 725, 786
GsuI CTGGAG 1 cut(s) 527
HaeIII GGCC 4 cut(s) 334, 403, 662, 801
HgaI GACGC 2 cut(s) 430, 633
HhaI GCGC 1 cut(s) 790
Hin1I GRCGYC 1 cut(s) 644
Hin1II CATG 2 cut(s) 391, 586
Hin6I GCGC 1 cut(s) 788
HinP1I GCGC 1 cut(s) 788
HinfI GANTC 4 cut(s) 90, 286, 302, 419
HphI GGTGA 6 cut(s) 394, 418, 436, 625, 643, 662
Hpy166II GTNNAC 5 cut(s) 385, 436, 480, 681, 705
Hpy188I TCNGA 2 cut(s) 108, 538
Hpy188III TCNNGA 5 cut(s) 290, 308, 343, 368, 593
Hpy8I GTNNAC 5 cut(s) 385, 436, 480, 681, 705
Hpy99I CGWCG 1 cut(s) 488
HpyAV CCTTC 5 cut(s) 162, 217, 455, 628, 673
HpyCH4III ACNGT 4 cut(s) 164, 433, 542, 619
HpyCH4IV ACGT 8 cut(s) 329, 426, 452, 518, 683, 707, 735, 777
HpyCH4V TGCA 3 cut(s) 207, 687, 700
HpyF10VI GCNNNNNNNGC 3 cut(s) 397, 674, 807
HpyF3I CTNAG 3 cut(s) 86, 297, 322
HpySE526I ACGT 8 cut(s) 329, 426, 452, 518, 683, 707, 735, 777
Hsp92I GRCGYC 1 cut(s) 644
Hsp92II CATG 2 cut(s) 391, 586
HspAI GCGC 1 cut(s) 788
Kpn2I TCCGGA 3 cut(s) 289, 307, 367
KroI GCCGGC 1 cut(s) 391
KroNI GCCGGC 1 cut(s) 393
Kzo9I GATC 3 cut(s) 137, 179, 713
LguI GCTCTTC 1 cut(s) 306
LmnI GCTCC 2 cut(s) 109, 464
Lsp1109I GCAGC 2 cut(s) 711, 772
MaeII ACGT 8 cut(s) 329, 426, 452, 518, 683, 707, 735, 777
MaeIII GTNAC 5 cut(s) 259, 427, 442, 613, 731
MalI GATC 3 cut(s) 139, 181, 715
MbiI CCGCTC 1 cut(s) 467
MboI GATC 3 cut(s) 137, 179, 713
MboII GAAGA 3 cut(s) 222, 259, 323
MflI RGATCY 2 cut(s) 137, 713
MlyI GAGTC 3 cut(s) 295, 296, 428
MmeI TCCRAC 2 cut(s) 97, 753
MroI TCCGGA 3 cut(s) 289, 307, 367
MroNI GCCGGC 1 cut(s) 391
MspR9I CCNGG 6 cut(s) 354, 355, 506, 525, 569, 674
MvaI CCWGG 1 cut(s) 506
MwoI GCNNNNNNNGC 3 cut(s) 397, 674, 807
NaeI GCCGGC 1 cut(s) 393
NciI CCSGG 5 cut(s) 354, 355, 525, 569, 674
NdeII GATC 3 cut(s) 137, 179, 713
NgoMIV GCCGGC 1 cut(s) 391
NlaIII CATG 2 cut(s) 391, 586
NlaIV GGNNCC 2 cut(s) 294, 715
NmeAIII GCCGAG 1 cut(s) 360
NmuCI GTSAC 5 cut(s) 259, 427, 442, 613, 731
NspI RCATGY 1 cut(s) 391
PciSI GCTCTTC 1 cut(s) 306
PcsI WCGNNNNNNNCGW 2 cut(s) 423, 569
PdiI GCCGGC 1 cut(s) 393
PfeI GAWTC 1 cut(s) 90
Pfl23II CGTACG 1 cut(s) 423
PflFI GACNNNGTC 2 cut(s) 440, 643
PinAI ACCGGT 1 cut(s) 362
PkrI GCNGC 3 cut(s) 402, 726, 787
PleI GAGTC 3 cut(s) 294, 296, 427
PmaCI CACGTG 3 cut(s) 330, 519, 708
PmlI CACGTG 3 cut(s) 330, 519, 708
PpsI GAGTC 3 cut(s) 294, 296, 427
Ppu21I YACGTR 6 cut(s) 330, 427, 453, 519, 684, 708
PshAI GACNNNNGTC 1 cut(s) 519
Psp6I CCWGG 1 cut(s) 504
PspCI CACGTG 3 cut(s) 330, 519, 708
PspGI CCWGG 1 cut(s) 504
PspLI CGTACG 1 cut(s) 423
PspN4I GGNNCC 2 cut(s) 294, 715
PspPI GGNCC 2 cut(s) 365, 799
PsrI GAACNNNNNNTAC 2 cut(s) 557, 589
PsuI RGATCY 2 cut(s) 137, 713
PsyI GACNNNGTC 2 cut(s) 440, 643
RsaI GTAC 3 cut(s) 425, 575, 704
RsaNI GTAC 3 cut(s) 424, 574, 703
Rsr2I CGGWCCG 1 cut(s) 365
RsrII CGGWCCG 1 cut(s) 365
SapI GCTCTTC 1 cut(s) 306
SatI GCNGC 3 cut(s) 401, 725, 786
Sau3AI GATC 3 cut(s) 137, 179, 713
Sau96I GGNCC 2 cut(s) 365, 799
SchI GAGTC 3 cut(s) 295, 296, 428
ScrFI CCNGG 6 cut(s) 354, 355, 506, 525, 569, 674
SfcI CTRYAG 1 cut(s) 163
SinI GGWCC 1 cut(s) 365
SmaI CCCGGG 1 cut(s) 355
StyD4I CCNGG 6 cut(s) 352, 353, 504, 523, 567, 672
TaaI ACNGT 4 cut(s) 164, 433, 542, 619
TaiI ACGT 8 cut(s) 332, 429, 455, 521, 686, 710, 738, 780
TaqI TCGA 3 cut(s) 65, 342, 417
TatI WGTACW 1 cut(s) 702
TauI GCSGC 1 cut(s) 403
TfiI GAWTC 1 cut(s) 90
TseFI GTSAC 5 cut(s) 259, 427, 442, 613, 731
TseI GCWGC 2 cut(s) 724, 785
Tsp45I GTSAC 5 cut(s) 259, 427, 442, 613, 731
TspGWI ACGGA 3 cut(s) 83, 527, 620
TspMI CCCGGG 1 cut(s) 353
Tth111I GACNNNGTC 2 cut(s) 440, 643
VpaK11BI GGWCC 1 cut(s) 365
XceI RCATGY 1 cut(s) 391
XmaI CCCGGG 1 cut(s) 353
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.