FvH4_5g07700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0011674
Physical Location & Seq
Forward (+)
4513617 .. 4515392
1776 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g07700.t1

Sequence Viewer

Length: 819 bp
ATGGACAGGAGAGGCGGTTGTTGTATAGCGAGGTATGGCGGAGGTGGCGGCGTTTATGACACGTCGAAGATGGATAGAATAATGCTGAGATTCCGTCCGATCGCTCCGAAACCTGTCGGAGGGTCGGTCTGCGGCGGATCTACGCCGGAGATAAGTGAGAAATGTAGGAGGGGTAAGAGAAGGAACGTGAAAGACAAGCGGTGCAATAACAAAAAGAGAAAGGCTTCTTCTTCTTCTCCGCCGGAGGAGAAGAAAAAAAGTGGTGTAACCGCTGCGGTTACTACTCTGTCGCTACTTCCGGAGAGTCCGGAACCTAGGGACTCTCCGGAAGAGCGGAGCTCAACCACGTGGCTGAGCTTCGAGAGCTTTCCTGGAAATAAGGAGTACCAGACGGTGAATATTCCGGCTGTGCGGCCCGTGAGAGTGGTGGGATCGTCCGTGACGGTGGACTGCGTGACGGATACGTGGGTTGATGGAGGACTGGGGTTTACAGACGAAGAGAGGAGGATGAGTCTGGAGACGGACACGTGTCCGGGGTTCTTATCGGACGGGTACGGTAGGGTGGTGTGGACGAACGGGGCGTACAAAAGCATGGTGGGTCAAGAGAACGAGACGGATGAGGTGACGGTGTGTTTGGTTGTGAAGGAGACGGCGTCTGTGACGGCGGTGGCCTTGGCTTACCCGGCGTTTACGTGCAGAGTGAGAGTGCAGTACACGTGTGGATCCCTCACGGTGCCGTGTGACGTGTGGAGAATGGAGGGAGGAGGTTTTGCGTGGCGGTTGGACGTGAAAGCTGCGCTGTGTCTCGGCCGGCCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

273

Amino Acids

29.63

Weight (kDa)

8.9

Isoelectric Point (pI)

54.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7950 PF25821 144 - 268 3e-48 Domain of unknown function (DUF7950)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011674)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G48510 AT5G50360 AT5G63350
fragaria_vesca FvH4_5g07700
malus_domestica MD06G1147800.v1.1 MD14G1162100.v1.1
prunus_persica Prupe.5G154700_v2.0.a1
pyrus_communis pycom14g13490 pycom72g00090
rosa_chinensis RchiOBHm_Chr7g0190771
rosa_laevigata RLG00000004500
rosa_multiflora Rmu_co8372469.1_g000001
rosa_roxburghii Rroxscaffold_3G00264340
rosa_rugosa Rorug06G0506700
rosa_samantha Rh7AG113400 Rh7BG115900 Rh7CG118400 Rh7DG117400
rosa_wichuraiana Rw7G009900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 733
AccBSI CCGCTC 1 cut(s) 334
AccIII TCCGGA 3 cut(s) 298, 307, 325
AclWI GGATC 4 cut(s) 145, 439, 717, 730
AcoI YGGCCR 2 cut(s) 808, 812
AcvI CACGTG 3 cut(s) 348, 528, 717
AcyI GRCGYC 1 cut(s) 653
AfaI GTAC 4 cut(s) 386, 554, 584, 713
AfiI CCNNNNNNNGG 1 cut(s) 119
AflIII ACRYGT 6 cut(s) 60, 525, 527, 714, 716, 744
AjiI CACGTC 3 cut(s) 63, 745, 787
AjnI CCWGG 1 cut(s) 370
AluBI AGCT 4 cut(s) 339, 357, 366, 794
AluI AGCT 4 cut(s) 339, 357, 366, 794
Alw21I GWGCWC 1 cut(s) 341
Alw26I GTCTC 4 cut(s) 512, 605, 641, 809
AlwI GGATC 4 cut(s) 145, 439, 717, 730
Aor13HI TCCGGA 3 cut(s) 298, 307, 325
AoxI GGCC 4 cut(s) 413, 669, 808, 812
ApeKI GCWGC 2 cut(s) 272, 794
ArsI GACNNNNNNTTYG 2 cut(s) 616, 648
Asp700I GAANNNNTTC 1 cut(s) 223
AspA2I CCTAGG 1 cut(s) 314
AspLEI GCGC 1 cut(s) 799
AspS9I GGNCC 1 cut(s) 414
AsuC2I CCSGG 2 cut(s) 534, 683
AsuHPI GGTGA 2 cut(s) 406, 634
AvrII CCTAGG 1 cut(s) 314
BaeI ACNNNNGTAYC 2 cut(s) 453, 486
BamHI GGATCC 1 cut(s) 722
BanI GGYRCC 1 cut(s) 733
BanII GRGCYC 1 cut(s) 341
BbrPI CACGTG 3 cut(s) 348, 528, 717
Bbv12I GWGCWC 1 cut(s) 341
BbvI GCAGC 2 cut(s) 259, 781
BccI CCATC 2 cut(s) 64, 467
BceAI ACGGC 4 cut(s) 666, 678, 721, 799
BciT130I CCWGG 1 cut(s) 372
BciVI GTATCC 1 cut(s) 454
BcnI CCSGG 2 cut(s) 534, 683
BcoDI GTCTC 4 cut(s) 512, 605, 641, 809
BfaI CTAG 1 cut(s) 315
BfuI GTATCC 1 cut(s) 454
BisI GCNGC 5 cut(s) 49, 133, 273, 413, 795
BlnI CCTAGG 1 cut(s) 314
BlpI GCTNAGC 1 cut(s) 353
BlsI GCNGC 5 cut(s) 50, 134, 274, 414, 796
Bme1390I CCNGG 3 cut(s) 372, 534, 683
BmgBI CACGTC 3 cut(s) 63, 745, 787
BmgT120I GGNCC 1 cut(s) 414
BmiI GGNNCC 3 cut(s) 312, 724, 735
BmrFI CCNGG 3 cut(s) 372, 534, 683
BmrI ACTGGG 1 cut(s) 491
BmuI ACTGGG 1 cut(s) 491
BoxI GACNNNNGTC 1 cut(s) 528
BplI GAGNNNNNCTC 2 cut(s) 323, 355
BpmI CTGGAG 1 cut(s) 536
Bpu1102I GCTNAGC 1 cut(s) 353
BpuMI CCSGG 2 cut(s) 534, 683
BsaAI YACGTR 5 cut(s) 348, 465, 528, 693, 717
BsaHI GRCGYC 1 cut(s) 653
BsaJI CCNNGG 3 cut(s) 314, 533, 672
BsaWI WCCGGW 3 cut(s) 298, 307, 325
BsaXI ACNNNNNCTCC 7 cut(s) 31, 111, 141, 496, 526, 638, 668
Bsc4I CCNNNNNNNGG 1 cut(s) 119
Bse118I RCCGGY 1 cut(s) 810
Bse1I ACTGG 1 cut(s) 486
BseAI TCCGGA 3 cut(s) 298, 307, 325
BseBI CCWGG 1 cut(s) 372
BseDI CCNNGG 3 cut(s) 314, 533, 672
BseGI GGATG 2 cut(s) 513, 622
BseLI CCNNNNNNNGG 1 cut(s) 119
BseMII CTCAG 2 cut(s) 77, 344
BseNI ACTGG 1 cut(s) 486
BseRI GAGGAG 3 cut(s) 260, 517, 777
BseX3I CGGCCG 2 cut(s) 808, 812
BseXI GCAGC 2 cut(s) 259, 781
BsgI GTGCAG 2 cut(s) 715, 728
Bsh1285I CGRYCG 3 cut(s) 102, 811, 815
BshFI GGCC 4 cut(s) 415, 671, 810, 814
BshNI GGYRCC 1 cut(s) 733
BsiEI CGRYCG 3 cut(s) 102, 811, 815
BsiHKAI GWGCWC 1 cut(s) 341
BsiSI CCGG 9 cut(s) 146, 242, 299, 308, 326, 404, 533, 683, 811
BslFI GGGAC 1 cut(s) 332
BslI CCNNNNNNNGG 1 cut(s) 119
BsmAI GTCTC 4 cut(s) 512, 605, 641, 809
BsmBI CGTCTC 3 cut(s) 512, 605, 641
BsmFI GGGAC 1 cut(s) 332
BsnI GGCC 4 cut(s) 415, 671, 810, 814
Bsp1286I GDGCHC 1 cut(s) 341
Bsp13I TCCGGA 3 cut(s) 298, 307, 325
Bsp143I GATC 4 cut(s) 99, 137, 431, 722
Bsp1720I GCTNAGC 1 cut(s) 353
BspANI GGCC 4 cut(s) 415, 671, 810, 814
BspCNI CTCAG 2 cut(s) 78, 345
BspEI TCCGGA 3 cut(s) 298, 307, 325
BspLI GGNNCC 3 cut(s) 312, 724, 735
BspPI GGATC 4 cut(s) 145, 439, 717, 730
BspQI GCTCTTC 1 cut(s) 324
BspT107I GGYRCC 1 cut(s) 733
BsrBI CCGCTC 1 cut(s) 334
BsrFI RCCGGY 1 cut(s) 810
BsrI ACTGG 1 cut(s) 486
BssAI RCCGGY 1 cut(s) 810
BssECI CCNNGG 3 cut(s) 314, 533, 672
BssMI GATC 4 cut(s) 99, 137, 431, 722
BssNI GRCGYC 1 cut(s) 653
BssT1I CCWWGG 2 cut(s) 314, 672
Bst2UI CCWGG 1 cut(s) 372
Bst4CI ACNGT 5 cut(s) 394, 445, 557, 628, 733
Bst6I CTCTTC 2 cut(s) 324, 492
BstACI GRCGYC 1 cut(s) 653
BstBAI YACGTR 5 cut(s) 348, 465, 528, 693, 717
BstC8I GCNNGC 1 cut(s) 812
BstDEI CTNAG 2 cut(s) 86, 353
BstENI CCTNNNNNAGG 1 cut(s) 117
BstF5I GGATG 2 cut(s) 513, 622
BstHHI GCGC 1 cut(s) 799
BstKTI GATC 4 cut(s) 102, 140, 434, 725
BstMAI GTCTC 4 cut(s) 512, 605, 641, 809
BstMBI GATC 4 cut(s) 99, 137, 431, 722
BstMCI CGRYCG 3 cut(s) 102, 811, 815
BstMWI GCNNNNNNNGC 3 cut(s) 45, 363, 683
BstNI CCWGG 1 cut(s) 372
BstPAI GACNNNNGTC 1 cut(s) 528
BstSCI CCNGG 3 cut(s) 370, 532, 681
BstV1I GCAGC 2 cut(s) 259, 781
BstX2I RGATCY 2 cut(s) 137, 722
BstYI RGATCY 2 cut(s) 137, 722
BstZI CGGCCG 2 cut(s) 808, 812
BsuI GTATCC 1 cut(s) 454
BsuRI GGCC 4 cut(s) 415, 671, 810, 814
BtrI CACGTC 3 cut(s) 63, 745, 787
BtsCI GGATG 2 cut(s) 513, 622
Cac8I GCNNGC 1 cut(s) 812
CfoI GCGC 1 cut(s) 799
Cfr10I RCCGGY 1 cut(s) 810
Cfr13I GGNCC 1 cut(s) 414
CseI GACGC 1 cut(s) 642
Csp6I GTAC 4 cut(s) 385, 553, 583, 712
CviAII CATG 1 cut(s) 592
CviQI GTAC 4 cut(s) 385, 553, 583, 712
DdeI CTNAG 2 cut(s) 86, 353
DpnI GATC 4 cut(s) 101, 139, 433, 724
DpnII GATC 4 cut(s) 99, 137, 431, 722
EaeI YGGCCR 2 cut(s) 808, 812
EagI CGGCCG 2 cut(s) 808, 812
Eam1104I CTCTTC 2 cut(s) 324, 492
EarI CTCTTC 2 cut(s) 324, 492
EciI GGCGGA 3 cut(s) 54, 150, 228
Ecl136II GAGCTC 1 cut(s) 339
EclXI CGGCCG 2 cut(s) 808, 812
Eco130I CCWWGG 2 cut(s) 314, 672
Eco24I GRGCYC 1 cut(s) 341
Eco52I CGGCCG 2 cut(s) 808, 812
Eco53kI GAGCTC 1 cut(s) 339
Eco72I CACGTG 3 cut(s) 348, 528, 717
EcoICRI GAGCTC 1 cut(s) 339
EcoNI CCTNNNNNAGG 1 cut(s) 117
EcoRII CCWGG 1 cut(s) 370
EcoT14I CCWWGG 2 cut(s) 314, 672
EcoT38I GRGCYC 1 cut(s) 341
ErhI CCWWGG 2 cut(s) 314, 672
Esp3I CGTCTC 3 cut(s) 512, 605, 641
FaeI CATG 1 cut(s) 595
FaiI YATR 4 cut(s) 26, 36, 57, 593
FaqI GGGAC 1 cut(s) 332
FatI CATG 1 cut(s) 591
Fnu4HI GCNGC 5 cut(s) 49, 133, 273, 413, 795
FokI GGATG 2 cut(s) 520, 629
FriOI GRGCYC 1 cut(s) 341
FseI GGCCGGCC 1 cut(s) 814
Fsp4HI GCNGC 5 cut(s) 49, 133, 273, 413, 795
FspBI CTAG 1 cut(s) 315
GlaI GCGC 1 cut(s) 798
GluI GCNGC 5 cut(s) 49, 133, 273, 413, 795
GsuI CTGGAG 1 cut(s) 536
HaeIII GGCC 4 cut(s) 415, 671, 810, 814
HapII CCGG 9 cut(s) 146, 242, 299, 308, 326, 404, 533, 683, 811
HgaI GACGC 1 cut(s) 642
HhaI GCGC 1 cut(s) 799
Hin1I GRCGYC 1 cut(s) 653
Hin1II CATG 1 cut(s) 595
Hin6I GCGC 1 cut(s) 797
HinP1I GCGC 1 cut(s) 797
HinfI GANTC 4 cut(s) 90, 304, 320, 511
HpaII CCGG 9 cut(s) 146, 242, 299, 308, 326, 404, 533, 683, 811
HphI GGTGA 2 cut(s) 406, 634
Hpy166II GTNNAC 5 cut(s) 448, 489, 570, 690, 714
Hpy188I TCNGA 4 cut(s) 99, 108, 119, 547
Hpy188III TCNNGA 6 cut(s) 299, 308, 326, 361, 515, 602
Hpy8I GTNNAC 5 cut(s) 448, 489, 570, 690, 714
Hpy99I CGWCG 1 cut(s) 67
HpyAV CCTTC 2 cut(s) 174, 637
HpyCH4III ACNGT 5 cut(s) 394, 445, 557, 628, 733
HpyCH4IV ACGT 9 cut(s) 62, 186, 347, 464, 527, 692, 716, 744, 786
HpyCH4V TGCA 3 cut(s) 204, 696, 709
HpyF10VI GCNNNNNNNGC 3 cut(s) 45, 363, 683
HpyF3I CTNAG 2 cut(s) 86, 353
HpySE526I ACGT 9 cut(s) 62, 186, 347, 464, 527, 692, 716, 744, 786
Hsp92I GRCGYC 1 cut(s) 653
Hsp92II CATG 1 cut(s) 595
HspAI GCGC 1 cut(s) 797
Kpn2I TCCGGA 3 cut(s) 298, 307, 325
KroI GCCGGC 1 cut(s) 810
KroNI GCCGGC 1 cut(s) 812
Kzo9I GATC 4 cut(s) 99, 137, 431, 722
LguI GCTCTTC 1 cut(s) 324
LmnI GCTCC 2 cut(s) 109, 336
Lsp1109I GCAGC 2 cut(s) 259, 781
MaeI CTAG 1 cut(s) 315
MaeII ACGT 9 cut(s) 62, 186, 347, 464, 527, 692, 716, 744, 786
MaeIII GTNAC 7 cut(s) 265, 277, 439, 454, 622, 658, 740
MalI GATC 4 cut(s) 101, 139, 433, 724
MbiI CCGCTC 1 cut(s) 334
MboI GATC 4 cut(s) 99, 137, 431, 722
MboII GAAGA 7 cut(s) 79, 219, 222, 225, 262, 341, 509
MflI RGATCY 2 cut(s) 137, 722
MhlI GDGCHC 1 cut(s) 341
MlyI GAGTC 3 cut(s) 313, 314, 520
MmeI TCCRAC 2 cut(s) 97, 762
MroI TCCGGA 3 cut(s) 298, 307, 325
MroNI GCCGGC 1 cut(s) 810
MroXI GAANNNNTTC 1 cut(s) 223
MspA1I CMGCKG 1 cut(s) 272
MspI CCGG 9 cut(s) 146, 242, 299, 308, 326, 404, 533, 683, 811
MspR9I CCNGG 3 cut(s) 372, 534, 683
MvaI CCWGG 1 cut(s) 372
MwoI GCNNNNNNNGC 3 cut(s) 45, 363, 683
NaeI GCCGGC 1 cut(s) 812
NciI CCSGG 2 cut(s) 534, 683
NdeII GATC 4 cut(s) 99, 137, 431, 722
NgoMIV GCCGGC 1 cut(s) 810
NlaIII CATG 1 cut(s) 595
NlaIV GGNNCC 3 cut(s) 312, 724, 735
NmeAIII GCCGAG 1 cut(s) 786
NmuCI GTSAC 5 cut(s) 439, 454, 622, 658, 740
PciSI GCTCTTC 1 cut(s) 324
PcsI WCGNNNNNNNCGW 1 cut(s) 578
PdiI GCCGGC 1 cut(s) 812
PdmI GAANNNNTTC 1 cut(s) 223
PfeI GAWTC 1 cut(s) 90
PflFI GACNNNGTC 1 cut(s) 652
PfoI TCCNGGA 1 cut(s) 370
PkrI GCNGC 5 cut(s) 50, 134, 274, 414, 796
Ple19I CGATCG 1 cut(s) 102
PleI GAGTC 3 cut(s) 312, 314, 519
PmaCI CACGTG 3 cut(s) 348, 528, 717
PmlI CACGTG 3 cut(s) 348, 528, 717
PpsI GAGTC 3 cut(s) 312, 314, 519
Ppu21I YACGTR 5 cut(s) 348, 465, 528, 693, 717
PshAI GACNNNNGTC 1 cut(s) 528
Psp124BI GAGCTC 1 cut(s) 341
Psp6I CCWGG 1 cut(s) 370
PspCI CACGTG 3 cut(s) 348, 528, 717
PspGI CCWGG 1 cut(s) 370
PspN4I GGNNCC 3 cut(s) 312, 724, 735
PspPI GGNCC 1 cut(s) 414
PsrI GAACNNNNNNTAC 2 cut(s) 566, 598
PsuI RGATCY 2 cut(s) 137, 722
PsyI GACNNNGTC 1 cut(s) 652
PvuI CGATCG 1 cut(s) 102
RigI GGCCGGCC 1 cut(s) 814
RsaI GTAC 4 cut(s) 386, 554, 584, 713
RsaNI GTAC 4 cut(s) 385, 553, 583, 712
SacI GAGCTC 1 cut(s) 341
SapI GCTCTTC 1 cut(s) 324
SatI GCNGC 5 cut(s) 49, 133, 273, 413, 795
Sau3AI GATC 4 cut(s) 99, 137, 431, 722
Sau96I GGNCC 1 cut(s) 414
SchI GAGTC 3 cut(s) 313, 314, 520
ScrFI CCNGG 3 cut(s) 372, 534, 683
SduI GDGCHC 1 cut(s) 341
SspI AATATT 1 cut(s) 400
SspMI CTAG 1 cut(s) 315
SstI GAGCTC 1 cut(s) 341
StyD4I CCNGG 3 cut(s) 370, 532, 681
StyI CCWWGG 2 cut(s) 314, 672
TaaI ACNGT 5 cut(s) 394, 445, 557, 628, 733
TaiI ACGT 9 cut(s) 65, 189, 350, 467, 530, 695, 719, 747, 789
TaqI TCGA 2 cut(s) 65, 360
TaqII GACCGA 1 cut(s) 115
TatI WGTACW 1 cut(s) 711
TauI GCSGC 3 cut(s) 51, 135, 415
TfiI GAWTC 1 cut(s) 90
TseFI GTSAC 5 cut(s) 439, 454, 622, 658, 740
TseI GCWGC 2 cut(s) 272, 794
Tsp45I GTSAC 5 cut(s) 439, 454, 622, 658, 740
TspGWI ACGGA 5 cut(s) 83, 427, 473, 536, 629
Tth111I GACNNNGTC 1 cut(s) 652
XagI CCTNNNNNAGG 1 cut(s) 117
XmaJI CCTAGG 1 cut(s) 314
XmnI GAANNNNTTC 1 cut(s) 223
XspI CTAG 1 cut(s) 315
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.