Rh7DG117400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0011674
Physical Location & Seq
Reverse (-)
9875446 .. 9876912
1467 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG117400.1

Sequence Viewer

Length: 813 bp
ATGGACGGGAGAGGCGGTTGTTGTATAGCGAGGTATGGGGGAGGTGGTGGCGTTTATGATATGTCGAAGCTGGATAGAATAATGCTGAGATTCCGTCCAATCGCTCCGAAGCCGGTTGGAGGGTCAGTCTCCGGCGGATCTACGCCGGAGAATAGCGAGAACTGTAGAAGGGGAAAGAGAAGGTATGTGAGAGACAAGCGGTGCAATAACAGAAAGCGTAAGGCTTCTTCTCCGCCTGATAAGAAGAAAGTTGCTGTCACTACTCTGTCGCTGTTGCCGGAGAGTCCGGAACCTAAGCACTCTCCGGAAGAGCGTAGCTCACCCACGTGGCTGAGCTTCGAGAGTTTTCCTGGGAATACCGGTCCGGAGTACAAGGTAGTGAACATGCGCCACATGCCGGCTTTGCGGCCGGTGAGAGTGGTCGAGTCTTACGTGACGGTGGACTGCGTCACCGATACGTGGGTGGAAGGAGGAGGACTGGGGTTTACCGACGAGGAGAGGAGGATGAGCCTGGAGACGGACACGTGTCCCGGGTTCTTATCGGACGGTTATTGTAGGGTTGTTTGGACGAACCGGGCGTACAGAAGCATGGTGGGTCAGGAGAACGAGACGGATGAGGTGACGGTGTGTCTGGTGGTGAAGGAGACGGCGACTGTGACGGCGGTGGCCTTGGCTCACCCGGCGTTTACGTGCAGAGTGAGAGTGCAGTACACGTGTGGATCCATCACGCTGCCTTGTGACGTGTGGAGAATGGAGGGAGGCGGGTTTGCGTGGCGGTTGGACGTGAAAGCTGCGCTGTGTCTGGGCCGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

270

Amino Acids

29.85

Weight (kDa)

9.01

Isoelectric Point (pI)

50.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7950 PF25821 141 - 267 4.4e-49 Domain of unknown function (DUF7950)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011674)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G48510 AT5G50360 AT5G63350
fragaria_vesca FvH4_5g07700
malus_domestica MD06G1147800.v1.1 MD14G1162100.v1.1
prunus_persica Prupe.5G154700_v2.0.a1
pyrus_communis pycom14g13490 pycom72g00090
rosa_chinensis RchiOBHm_Chr7g0190771
rosa_laevigata RLG00000004500
rosa_multiflora Rmu_co8372469.1_g000001
rosa_roxburghii Rroxscaffold_3G00264340
rosa_rugosa Rorug06G0506700
rosa_samantha Rh7AG113400 Rh7BG115900 Rh7CG118400 Rh7DG117400
rosa_wichuraiana Rw7G009900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 3 cut(s) 286, 304, 364
AciI CCGC 8 cut(s) 15, 135, 199, 233, 406, 662, 762, 775
AclWI GGATC 3 cut(s) 145, 714, 727
AcoI YGGCCR 1 cut(s) 407
AcvI CACGTG 3 cut(s) 327, 525, 714
AfaI GTAC 3 cut(s) 371, 581, 710
AfiI CCNNNNNNNGG 4 cut(s) 119, 397, 459, 517
AflIII ACRYGT 5 cut(s) 522, 524, 711, 713, 741
AgeI ACCGGT 1 cut(s) 359
AhdI GACNNNNNGTC 1 cut(s) 627
AjiI CACGTC 2 cut(s) 742, 784
AjnI CCWGG 2 cut(s) 349, 510
AleI CACNNNNGTG 1 cut(s) 325
AluBI AGCT 4 cut(s) 70, 318, 336, 791
AluI AGCT 4 cut(s) 70, 318, 336, 791
Alw26I GTCTC 5 cut(s) 133, 186, 509, 602, 638
AlwI GGATC 3 cut(s) 145, 714, 727
Ama87I CYCGRG 1 cut(s) 530
Aor13HI TCCGGA 3 cut(s) 286, 304, 364
AoxI GGCC 3 cut(s) 407, 666, 805
ApeKI GCWGC 2 cut(s) 730, 791
AsiGI ACCGGT 1 cut(s) 359
AspLEI GCGC 2 cut(s) 390, 796
AspS9I GGNCC 2 cut(s) 362, 805
AsuC2I CCSGG 4 cut(s) 531, 532, 575, 680
AsuHPI GGTGA 6 cut(s) 312, 424, 442, 631, 649, 668
AvaI CYCGRG 1 cut(s) 530
AvaII GGWCC 1 cut(s) 362
BaeI ACNNNNGTAYC 2 cut(s) 447, 480
BamHI GGATCC 1 cut(s) 719
BarI GAAGNNNNNNTAC 2 cut(s) 211, 243
BbrPI CACGTG 3 cut(s) 327, 525, 714
BbvI GCAGC 2 cut(s) 717, 778
BccI CCATC 1 cut(s) 731
BceAI ACGGC 2 cut(s) 663, 675
BciT130I CCWGG 2 cut(s) 351, 512
BcnI CCSGG 4 cut(s) 531, 532, 575, 680
BcoDI GTCTC 5 cut(s) 133, 186, 509, 602, 638
BfmI CTRYAG 1 cut(s) 163
BisI GCNGC 3 cut(s) 407, 731, 792
BlpI GCTNAGC 1 cut(s) 332
BlsI GCNGC 3 cut(s) 408, 732, 793
Bme1390I CCNGG 6 cut(s) 351, 512, 531, 532, 575, 680
Bme18I GGWCC 1 cut(s) 362
BmeRI GACNNNNNGTC 1 cut(s) 627
BmeT110I CYCGRG 1 cut(s) 530
BmgBI CACGTC 2 cut(s) 742, 784
BmgT120I GGNCC 2 cut(s) 362, 805
BmiI GGNNCC 2 cut(s) 291, 721
BmrFI CCNGG 6 cut(s) 351, 512, 531, 532, 575, 680
BmrI ACTGGG 1 cut(s) 488
BmuI ACTGGG 1 cut(s) 488
BoxI GACNNNNGTC 1 cut(s) 525
BplI GAGNNNNNCTC 2 cut(s) 302, 334
BpmI CTGGAG 1 cut(s) 533
Bpu10I CCTNAGC 1 cut(s) 294
Bpu1102I GCTNAGC 1 cut(s) 332
BpuMI CCSGG 4 cut(s) 531, 532, 575, 680
BsaAI YACGTR 6 cut(s) 327, 433, 459, 525, 690, 714
BsaJI CCNNGG 3 cut(s) 350, 530, 669
BsaWI WCCGGW 4 cut(s) 286, 304, 359, 364
BsaXI ACNNNNNCTCC 3 cut(s) 31, 111, 141
Bsc4I CCNNNNNNNGG 4 cut(s) 119, 397, 459, 517
Bse118I RCCGGY 5 cut(s) 112, 359, 397, 409, 807
Bse1I ACTGG 1 cut(s) 483
BseAI TCCGGA 3 cut(s) 286, 304, 364
BseBI CCWGG 2 cut(s) 351, 512
BseDI CCNNGG 3 cut(s) 350, 530, 669
BseGI GGATG 2 cut(s) 510, 619
BseLI CCNNNNNNNGG 4 cut(s) 119, 397, 459, 517
BseMII CTCAG 2 cut(s) 77, 323
BseNI ACTGG 1 cut(s) 483
BseRI GAGGAG 3 cut(s) 486, 509, 514
BseX3I CGGCCG 1 cut(s) 407
BseXI GCAGC 2 cut(s) 717, 778
BsgI GTGCAG 2 cut(s) 712, 725
Bsh1285I CGRYCG 1 cut(s) 410
BshFI GGCC 3 cut(s) 409, 668, 807
BshTI ACCGGT 1 cut(s) 359
BsiEI CGRYCG 1 cut(s) 410
BsiHKCI CYCGRG 1 cut(s) 530
BslFI GGGAC 1 cut(s) 513
BslI CCNNNNNNNGG 4 cut(s) 119, 397, 459, 517
BsmAI GTCTC 5 cut(s) 133, 186, 509, 602, 638
BsmBI CGTCTC 3 cut(s) 509, 602, 638
BsmFI GGGAC 1 cut(s) 513
BsnI GGCC 3 cut(s) 409, 668, 807
BsoBI CYCGRG 1 cut(s) 530
Bsp13I TCCGGA 3 cut(s) 286, 304, 364
Bsp143I GATC 2 cut(s) 137, 719
Bsp1720I GCTNAGC 1 cut(s) 332
BspACI CCGC 8 cut(s) 15, 135, 199, 233, 406, 662, 762, 775
BspANI GGCC 3 cut(s) 409, 668, 807
BspCNI CTCAG 2 cut(s) 78, 324
BspEI TCCGGA 3 cut(s) 286, 304, 364
BspLI GGNNCC 2 cut(s) 291, 721
BspPI GGATC 3 cut(s) 145, 714, 727
BspQI GCTCTTC 1 cut(s) 303
BsrFI RCCGGY 5 cut(s) 112, 359, 397, 409, 807
BsrI ACTGG 1 cut(s) 483
BssAI RCCGGY 5 cut(s) 112, 359, 397, 409, 807
BssECI CCNNGG 3 cut(s) 350, 530, 669
BssMI GATC 2 cut(s) 137, 719
BssT1I CCWWGG 1 cut(s) 669
Bst2UI CCWGG 2 cut(s) 351, 512
Bst4CI ACNGT 5 cut(s) 164, 439, 548, 625, 655
Bst6I CTCTTC 1 cut(s) 303
BstBAI YACGTR 6 cut(s) 327, 433, 459, 525, 690, 714
BstC8I GCNNGC 1 cut(s) 399
BstDEI CTNAG 3 cut(s) 86, 294, 332
BstF5I GGATG 2 cut(s) 510, 619
BstHHI GCGC 2 cut(s) 390, 796
BstKTI GATC 2 cut(s) 140, 722
BstMAI GTCTC 5 cut(s) 133, 186, 509, 602, 638
BstMBI GATC 2 cut(s) 137, 719
BstMCI CGRYCG 1 cut(s) 410
BstMWI GCNNNNNNNGC 3 cut(s) 394, 403, 680
BstNI CCWGG 2 cut(s) 351, 512
BstNSI RCATGY 2 cut(s) 388, 397
BstPAI GACNNNNGTC 1 cut(s) 525
BstSCI CCNGG 6 cut(s) 349, 510, 529, 530, 573, 678
BstSFI CTRYAG 1 cut(s) 163
BstV1I GCAGC 2 cut(s) 717, 778
BstX2I RGATCY 2 cut(s) 137, 719
BstYI RGATCY 2 cut(s) 137, 719
BstZI CGGCCG 1 cut(s) 407
BsuRI GGCC 3 cut(s) 409, 668, 807
BtrI CACGTC 2 cut(s) 742, 784
BtsCI GGATG 2 cut(s) 510, 619
Cac8I GCNNGC 1 cut(s) 399
CfoI GCGC 2 cut(s) 390, 796
Cfr10I RCCGGY 5 cut(s) 112, 359, 397, 409, 807
Cfr13I GGNCC 2 cut(s) 362, 805
Cfr9I CCCGGG 1 cut(s) 530
CpoI CGGWCCG 1 cut(s) 362
CseI GACGC 1 cut(s) 436
Csp6I GTAC 3 cut(s) 370, 580, 709
CspAI ACCGGT 1 cut(s) 359
CspI CGGWCCG 1 cut(s) 362
CviAII CATG 3 cut(s) 385, 394, 589
CviQI GTAC 3 cut(s) 370, 580, 709
DdeI CTNAG 3 cut(s) 86, 294, 332
DpnI GATC 2 cut(s) 139, 721
DpnII GATC 2 cut(s) 137, 719
DriI GACNNNNNGTC 1 cut(s) 627
EaeI YGGCCR 1 cut(s) 407
EagI CGGCCG 1 cut(s) 407
Eam1104I CTCTTC 1 cut(s) 303
Eam1105I GACNNNNNGTC 1 cut(s) 627
EarI CTCTTC 1 cut(s) 303
EciI GGCGGA 2 cut(s) 150, 222
EclXI CGGCCG 1 cut(s) 407
Eco130I CCWWGG 1 cut(s) 669
Eco47I GGWCC 1 cut(s) 362
Eco52I CGGCCG 1 cut(s) 407
Eco72I CACGTG 3 cut(s) 327, 525, 714
Eco88I CYCGRG 1 cut(s) 530
EcoRII CCWGG 2 cut(s) 349, 510
EcoT14I CCWWGG 1 cut(s) 669
ErhI CCWWGG 1 cut(s) 669
Esp3I CGTCTC 3 cut(s) 509, 602, 638
FaeI CATG 3 cut(s) 388, 397, 592
FaiI YATR 8 cut(s) 26, 36, 57, 62, 186, 386, 395, 590
FaqI GGGAC 1 cut(s) 513
FatI CATG 3 cut(s) 384, 393, 588
FauI CCCGC 1 cut(s) 755
Fnu4HI GCNGC 3 cut(s) 407, 731, 792
FokI GGATG 2 cut(s) 517, 626
Fsp4HI GCNGC 3 cut(s) 407, 731, 792
GlaI GCGC 2 cut(s) 389, 795
GluI GCNGC 3 cut(s) 407, 731, 792
GsuI CTGGAG 1 cut(s) 533
HaeIII GGCC 3 cut(s) 409, 668, 807
HgaI GACGC 1 cut(s) 436
HhaI GCGC 2 cut(s) 390, 796
Hin1II CATG 3 cut(s) 388, 397, 592
Hin6I GCGC 2 cut(s) 388, 794
HinP1I GCGC 2 cut(s) 388, 794
HinfI GANTC 3 cut(s) 90, 283, 425
HphI GGTGA 6 cut(s) 312, 424, 442, 631, 649, 668
Hpy166II GTNNAC 5 cut(s) 382, 442, 486, 687, 711
Hpy188I TCNGA 2 cut(s) 108, 544
Hpy188III TCNNGA 5 cut(s) 287, 305, 340, 365, 599
Hpy8I GTNNAC 5 cut(s) 382, 442, 486, 687, 711
Hpy99I CGWCG 1 cut(s) 494
HpyAV CCTTC 4 cut(s) 162, 174, 461, 634
HpyCH4III ACNGT 5 cut(s) 164, 439, 548, 625, 655
HpyCH4IV ACGT 8 cut(s) 326, 432, 458, 524, 689, 713, 741, 783
HpyCH4V TGCA 3 cut(s) 204, 693, 706
HpyF10VI GCNNNNNNNGC 3 cut(s) 394, 403, 680
HpyF3I CTNAG 3 cut(s) 86, 294, 332
HpySE526I ACGT 8 cut(s) 326, 432, 458, 524, 689, 713, 741, 783
Hsp92II CATG 3 cut(s) 388, 397, 592
HspAI GCGC 2 cut(s) 388, 794
Kpn2I TCCGGA 3 cut(s) 286, 304, 364
KroI GCCGGC 1 cut(s) 397
KroNI GCCGGC 1 cut(s) 399
Kzo9I GATC 2 cut(s) 137, 719
LguI GCTCTTC 1 cut(s) 303
LmnI GCTCC 1 cut(s) 109
Lsp1109I GCAGC 2 cut(s) 717, 778
MaeII ACGT 8 cut(s) 326, 432, 458, 524, 689, 713, 741, 783
MaeIII GTNAC 6 cut(s) 256, 433, 448, 619, 655, 737
MalI GATC 2 cut(s) 139, 721
MboI GATC 2 cut(s) 137, 719
MboII GAAGA 3 cut(s) 219, 256, 320
MflI RGATCY 2 cut(s) 137, 719
MlyI GAGTC 2 cut(s) 292, 434
MmeI TCCRAC 2 cut(s) 97, 759
MroI TCCGGA 3 cut(s) 286, 304, 364
MroNI GCCGGC 1 cut(s) 397
MslI CAYNNNNRTG 1 cut(s) 325
MspR9I CCNGG 6 cut(s) 351, 512, 531, 532, 575, 680
MvaI CCWGG 2 cut(s) 351, 512
MwoI GCNNNNNNNGC 3 cut(s) 394, 403, 680
NaeI GCCGGC 1 cut(s) 399
NciI CCSGG 4 cut(s) 531, 532, 575, 680
NdeII GATC 2 cut(s) 137, 719
NgoMIV GCCGGC 1 cut(s) 397
NlaIII CATG 3 cut(s) 388, 397, 592
NlaIV GGNNCC 2 cut(s) 291, 721
NmuCI GTSAC 6 cut(s) 256, 433, 448, 619, 655, 737
NspI RCATGY 2 cut(s) 388, 397
OliI CACNNNNGTG 1 cut(s) 325
PciSI GCTCTTC 1 cut(s) 303
PcsI WCGNNNNNNNCGW 2 cut(s) 429, 575
PdiI GCCGGC 1 cut(s) 399
PfeI GAWTC 1 cut(s) 90
PflFI GACNNNGTC 1 cut(s) 446
PinAI ACCGGT 1 cut(s) 359
PkrI GCNGC 3 cut(s) 408, 732, 793
PleI GAGTC 2 cut(s) 291, 433
PmaCI CACGTG 3 cut(s) 327, 525, 714
PmlI CACGTG 3 cut(s) 327, 525, 714
PpsI GAGTC 2 cut(s) 291, 433
Ppu21I YACGTR 6 cut(s) 327, 433, 459, 525, 690, 714
PshAI GACNNNNGTC 1 cut(s) 525
Psp6I CCWGG 2 cut(s) 349, 510
PspCI CACGTG 3 cut(s) 327, 525, 714
PspGI CCWGG 2 cut(s) 349, 510
PspN4I GGNNCC 2 cut(s) 291, 721
PspPI GGNCC 2 cut(s) 362, 805
PsrI GAACNNNNNNTAC 2 cut(s) 563, 595
PsuI RGATCY 2 cut(s) 137, 719
PsyI GACNNNGTC 1 cut(s) 446
RsaI GTAC 3 cut(s) 371, 581, 710
RsaNI GTAC 3 cut(s) 370, 580, 709
RseI CAYNNNNRTG 1 cut(s) 325
Rsr2I CGGWCCG 1 cut(s) 362
RsrII CGGWCCG 1 cut(s) 362
SapI GCTCTTC 1 cut(s) 303
SatI GCNGC 3 cut(s) 407, 731, 792
Sau3AI GATC 2 cut(s) 137, 719
Sau96I GGNCC 2 cut(s) 362, 805
SchI GAGTC 2 cut(s) 292, 434
ScrFI CCNGG 6 cut(s) 351, 512, 531, 532, 575, 680
SfcI CTRYAG 1 cut(s) 163
SinI GGWCC 1 cut(s) 362
SmaI CCCGGG 1 cut(s) 532
SmiMI CAYNNNNRTG 1 cut(s) 325
SsiI CCGC 8 cut(s) 15, 135, 199, 233, 406, 662, 762, 775
StyD4I CCNGG 6 cut(s) 349, 510, 529, 530, 573, 678
StyI CCWWGG 1 cut(s) 669
TaaI ACNGT 5 cut(s) 164, 439, 548, 625, 655
TaiI ACGT 8 cut(s) 329, 435, 461, 527, 692, 716, 744, 786
TaqI TCGA 3 cut(s) 65, 339, 423
TatI WGTACW 2 cut(s) 369, 708
TauI GCSGC 1 cut(s) 409
TfiI GAWTC 1 cut(s) 90
TseFI GTSAC 6 cut(s) 256, 433, 448, 619, 655, 737
TseI GCWGC 2 cut(s) 730, 791
Tsp45I GTSAC 6 cut(s) 256, 433, 448, 619, 655, 737
TspGWI ACGGA 3 cut(s) 83, 533, 626
TspMI CCCGGG 1 cut(s) 530
Tth111I GACNNNGTC 1 cut(s) 446
VpaK11BI GGWCC 1 cut(s) 362
XceI RCATGY 2 cut(s) 388, 397
XmaI CCCGGG 1 cut(s) 530
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.