pycom14g13490

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr14
OG0011674
Physical Location & Seq
Reverse (-)
16416844 .. 16417758
915 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom14g13490.1

Sequence Viewer

Length: 915 bp
ATGGACGGGAGAGGCGGCTGTTGCATAGCGAGGTACGGATATGGTAGCGGCGGAGAATATGACATGTCGAAGGTGGACAGGATAATGTTGAAGTTCAGACCGATCGCGCCGAAGCCGGTCAACGGAGGAGGATCAACACCGGAGAAGGGTGACTTGTACGTTAAGAGTGGGAGGGGGAGAGGGAAAAGATCACGGTCTGTGAAGTCAGGGCGCAAAGCGGTAGTTGACCCAAAGGACAAAAATAAAAATAAGAGAAGGAGATCGTCGAAGGCGGAGGAGGAAAAGACGGTTGTGACGCTGCCTCTGTTGCCGGAGACTCCGGAACCAAAGGAGTCTTCTGAGGAGAGAGAAAGGAACTCCTGCTCGAGTTACTCATCCACCACGTGGATGAGTTTCGATAATAATAATTCTACTTCTACGACTTCTCCGACAAGTCGTATAAGTAAGGTGGTGGCGGCGAAGGTGGTTGGGAAGTCGTGCGTGACGGTGGACTGCGTGACGGATACGTGGGTGGAAGGGGAGGGGCTAGGGTGTACGGACGGGGAGAGGAGGATGAACCTGGAGAGGGACACGTGTCCAGGGTTTATTTCCGACGGGACGGGGAGGGTGGTGTGGACGAATGGGGCGTACCGGAGCATGGTGGGGCAAAGGGAGGGGGAGATGATGGTGTGGCTGGTGATGAACGAGAACGCAGCGAGGGCGGTGGGAGCGATGAGTAATTATACGGCGGCGTTCACGTGCAGGGTGAGGGTGCAGTACAGTGGGTGTGGTGGTGGGACGTCGGCAGGGGATTGGAGCTCGTTGACGCTGCCGTGTGACGTTTGGAGGATGTTGGGTGGTGGGTTTGCGTGGAGGCTGGATGTAAAGGCAGCTCTTTCTTTGGGTGGTTGTAGTAATTTTATCAGTGCCGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

305

Amino Acids

32.87

Weight (kDa)

9.24

Isoelectric Point (pI)

39.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7950 PF25821 158 - 293 4.8e-47 Domain of unknown function (DUF7950)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011674)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G48510 AT5G50360 AT5G63350
fragaria_vesca FvH4_5g07700
malus_domestica MD06G1147800.v1.1 MD14G1162100.v1.1
prunus_persica Prupe.5G154700_v2.0.a1
pyrus_communis pycom14g13490 pycom72g00090
rosa_chinensis RchiOBHm_Chr7g0190771
rosa_laevigata RLG00000004500
rosa_multiflora Rmu_co8372469.1_g000001
rosa_roxburghii Rroxscaffold_3G00264340
rosa_rugosa Rorug06G0506700
rosa_samantha Rh7AG113400 Rh7BG115900 Rh7CG118400 Rh7DG117400
rosa_wichuraiana Rw7G009900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 782
AccB7I CCANNNNNTGG 1 cut(s) 384
AccII CGCG 1 cut(s) 107
AccIII TCCGGA 1 cut(s) 319
AciI CCGC 8 cut(s) 15, 48, 51, 218, 272, 455, 701, 728
AclWI GGATC 1 cut(s) 139
AcvI CACGTG 3 cut(s) 384, 573, 738
AcyI GRCGYC 1 cut(s) 779
AdeI CACNNNGTG 1 cut(s) 384
AfaI GTAC 5 cut(s) 35, 158, 535, 629, 758
AfiI CCNNNNNNNGG 5 cut(s) 122, 146, 384, 565, 637
AflIII ACRYGT 3 cut(s) 63, 570, 572
AgsI TTSAA 1 cut(s) 91
AjnI CCWGG 2 cut(s) 558, 577
AjuI GAANNNNNNNTTGG 2 cut(s) 319, 351
AluBI AGCT 2 cut(s) 798, 872
AluI AGCT 2 cut(s) 798, 872
Alw21I GWGCWC 1 cut(s) 800
Alw26I GTCTC 1 cut(s) 308
AlwI GGATC 1 cut(s) 139
Ama87I CYCGRG 1 cut(s) 364
Aor13HI TCCGGA 1 cut(s) 319
ApeKI GCWGC 4 cut(s) 298, 692, 808, 869
AspLEI GCGC 2 cut(s) 109, 213
AsuHPI GGTGA 3 cut(s) 161, 688, 757
AvaI CYCGRG 1 cut(s) 364
BaeI ACNNNNGTAYC 2 cut(s) 495, 528
BanII GRGCYC 1 cut(s) 800
BbrPI CACGTG 3 cut(s) 384, 573, 738
BbsI GAAGAC 1 cut(s) 327
Bbv12I GWGCWC 1 cut(s) 800
BbvI GCAGC 4 cut(s) 285, 704, 795, 881
BccI CCATC 1 cut(s) 658
BceAI ACGGC 3 cut(s) 741, 796, 893
BciT130I CCWGG 2 cut(s) 560, 579
BciVI GTATCC 1 cut(s) 496
BcoDI GTCTC 1 cut(s) 308
BfaI CTAG 1 cut(s) 527
BfuI GTATCC 1 cut(s) 496
BisI GCNGC 8 cut(s) 16, 49, 299, 456, 693, 729, 809, 870
BlsI GCNGC 8 cut(s) 17, 50, 300, 457, 694, 730, 810, 871
Bme1390I CCNGG 2 cut(s) 560, 579
BmeT110I CYCGRG 1 cut(s) 364
BmiI GGNNCC 1 cut(s) 324
BmrFI CCNGG 2 cut(s) 560, 579
BoxI GACNNNNGTC 1 cut(s) 573
BpiI GAAGAC 1 cut(s) 327
BpmI CTGGAG 1 cut(s) 581
BsaAI YACGTR 4 cut(s) 384, 507, 573, 738
BsaHI GRCGYC 1 cut(s) 779
BsaJI CCNNGG 1 cut(s) 578
BsaWI WCCGGW 3 cut(s) 139, 319, 630
BsaXI ACNNNNNCTCC 2 cut(s) 409, 439
Bsc4I CCNNNNNNNGG 5 cut(s) 122, 146, 384, 565, 637
Bse118I RCCGGY 1 cut(s) 115
BseAI TCCGGA 1 cut(s) 319
BseBI CCWGG 2 cut(s) 560, 579
BseDI CCNNGG 1 cut(s) 578
BseGI GGATG 5 cut(s) 374, 393, 558, 834, 865
BseLI CCNNNNNNNGG 5 cut(s) 122, 146, 384, 565, 637
BseMII CTCAG 1 cut(s) 330
BseRI GAGGAG 4 cut(s) 141, 290, 356, 562
BseXI GCAGC 4 cut(s) 285, 704, 795, 881
BsgI GTGCAG 2 cut(s) 760, 773
Bsh1236I CGCG 1 cut(s) 107
Bsh1285I CGRYCG 1 cut(s) 105
BsiEI CGRYCG 1 cut(s) 105
BsiHKAI GWGCWC 1 cut(s) 800
BsiHKCI CYCGRG 1 cut(s) 364
BsiSI CCGG 5 cut(s) 116, 140, 311, 320, 631
BslFI GGGAC 3 cut(s) 581, 610, 790
BslI CCNNNNNNNGG 5 cut(s) 122, 146, 384, 565, 637
BsmAI GTCTC 1 cut(s) 308
BsmFI GGGAC 3 cut(s) 581, 610, 790
BsoBI CYCGRG 1 cut(s) 364
Bsp1286I GDGCHC 1 cut(s) 800
Bsp13I TCCGGA 1 cut(s) 319
Bsp143I GATC 4 cut(s) 102, 131, 188, 260
BspACI CCGC 8 cut(s) 15, 48, 51, 218, 272, 455, 701, 728
BspCNI CTCAG 1 cut(s) 331
BspEI TCCGGA 1 cut(s) 319
BspFNI CGCG 1 cut(s) 107
BspLI GGNNCC 1 cut(s) 324
BspPI GGATC 1 cut(s) 139
BsrFI RCCGGY 1 cut(s) 115
BssAI RCCGGY 1 cut(s) 115
BssECI CCNNGG 1 cut(s) 578
BssMI GATC 4 cut(s) 102, 131, 188, 260
BssNI GRCGYC 1 cut(s) 779
Bst2UI CCWGG 2 cut(s) 560, 579
Bst4CI ACNGT 4 cut(s) 195, 289, 487, 761
BstACI GRCGYC 1 cut(s) 779
BstBAI YACGTR 4 cut(s) 384, 507, 573, 738
BstDEI CTNAG 1 cut(s) 339
BstF5I GGATG 5 cut(s) 374, 393, 558, 834, 865
BstFNI CGCG 1 cut(s) 107
BstHHI GCGC 2 cut(s) 109, 213
BstKTI GATC 4 cut(s) 105, 134, 191, 263
BstMAI GTCTC 1 cut(s) 308
BstMBI GATC 4 cut(s) 102, 131, 188, 260
BstMCI CGRYCG 1 cut(s) 105
BstMWI GCNNNNNNNGC 4 cut(s) 21, 307, 698, 707
BstNI CCWGG 2 cut(s) 560, 579
BstNSI RCATGY 1 cut(s) 67
BstPAI GACNNNNGTC 1 cut(s) 573
BstSCI CCNGG 2 cut(s) 558, 577
BstUI CGCG 1 cut(s) 107
BstV1I GCAGC 4 cut(s) 285, 704, 795, 881
BstV2I GAAGAC 1 cut(s) 327
BsuI GTATCC 1 cut(s) 496
BtgZI GCGATG 1 cut(s) 725
BtsCI GGATG 5 cut(s) 374, 393, 558, 834, 865
BtsIMutI CAGTG 2 cut(s) 766, 910
CfoI GCGC 2 cut(s) 109, 213
Cfr10I RCCGGY 1 cut(s) 115
CseI GACGC 2 cut(s) 304, 814
Csp6I GTAC 5 cut(s) 34, 157, 534, 628, 757
CviAII CATG 2 cut(s) 64, 637
CviJI RGCY 7 cut(s) 18, 115, 526, 673, 798, 856, 872
CviKI_1 RGCY 7 cut(s) 18, 115, 526, 673, 798, 856, 872
CviQI GTAC 5 cut(s) 34, 157, 534, 628, 757
DdeI CTNAG 1 cut(s) 339
DpnI GATC 4 cut(s) 104, 133, 190, 262
DpnII GATC 4 cut(s) 102, 131, 188, 260
DraIII CACNNNGTG 1 cut(s) 384
EciI GGCGGA 2 cut(s) 66, 287
Ecl136II GAGCTC 1 cut(s) 798
Eco24I GRGCYC 1 cut(s) 800
Eco53kI GAGCTC 1 cut(s) 798
Eco72I CACGTG 3 cut(s) 384, 573, 738
Eco88I CYCGRG 1 cut(s) 364
EcoICRI GAGCTC 1 cut(s) 798
EcoRII CCWGG 2 cut(s) 558, 577
EcoT38I GRGCYC 1 cut(s) 800
FaeI CATG 2 cut(s) 67, 640
FaiI YATR 8 cut(s) 26, 42, 60, 65, 440, 638, 723, 913
FalI AAGNNNNNCTT 2 cut(s) 137, 169
FaqI GGGAC 3 cut(s) 581, 610, 790
FatI CATG 2 cut(s) 63, 636
Fnu4HI GCNGC 8 cut(s) 16, 49, 299, 456, 693, 729, 809, 870
FokI GGATG 5 cut(s) 361, 400, 565, 841, 872
FriOI GRGCYC 1 cut(s) 800
Fsp4HI GCNGC 8 cut(s) 16, 49, 299, 456, 693, 729, 809, 870
FspBI CTAG 1 cut(s) 527
GlaI GCGC 2 cut(s) 108, 212
GluI GCNGC 8 cut(s) 16, 49, 299, 456, 693, 729, 809, 870
GsuI CTGGAG 1 cut(s) 581
HapII CCGG 5 cut(s) 116, 140, 311, 320, 631
HgaI GACGC 2 cut(s) 304, 814
HhaI GCGC 2 cut(s) 109, 213
Hin1I GRCGYC 1 cut(s) 779
Hin1II CATG 2 cut(s) 67, 640
Hin6I GCGC 2 cut(s) 107, 211
HinP1I GCGC 2 cut(s) 107, 211
HincII GTYRAC 3 cut(s) 121, 226, 804
HindII GTYRAC 3 cut(s) 121, 226, 804
HinfI GANTC 2 cut(s) 316, 332
HpaII CCGG 5 cut(s) 116, 140, 311, 320, 631
HphI GGTGA 3 cut(s) 161, 688, 757
Hpy166II GTNNAC 8 cut(s) 76, 121, 226, 490, 534, 615, 735, 804
Hpy188I TCNGA 4 cut(s) 98, 340, 429, 592
Hpy188III TCNNGA 1 cut(s) 320
Hpy8I GTNNAC 8 cut(s) 76, 121, 226, 490, 534, 615, 735, 804
Hpy99I CGWCG 3 cut(s) 268, 596, 784
HpyAV CCTTC 6 cut(s) 64, 139, 249, 262, 454, 509
HpyCH4III ACNGT 4 cut(s) 195, 289, 487, 761
HpyCH4IV ACGT 7 cut(s) 159, 383, 506, 572, 737, 779, 819
HpyCH4V TGCA 3 cut(s) 24, 741, 754
HpyF10VI GCNNNNNNNGC 4 cut(s) 21, 307, 698, 707
HpyF3I CTNAG 1 cut(s) 339
HpySE526I ACGT 7 cut(s) 159, 383, 506, 572, 737, 779, 819
Hsp92I GRCGYC 1 cut(s) 779
Hsp92II CATG 2 cut(s) 67, 640
HspAI GCGC 2 cut(s) 107, 211
Kpn2I TCCGGA 1 cut(s) 319
Kzo9I GATC 4 cut(s) 102, 131, 188, 260
LmnI GCTCC 3 cut(s) 633, 707, 795
Lsp1109I GCAGC 4 cut(s) 285, 704, 795, 881
MaeI CTAG 1 cut(s) 527
MaeII ACGT 7 cut(s) 159, 383, 506, 572, 737, 779, 819
MaeIII GTNAC 6 cut(s) 149, 292, 368, 481, 496, 815
MalI GATC 4 cut(s) 104, 133, 190, 262
MboI GATC 4 cut(s) 102, 131, 188, 260
MboII GAAGA 1 cut(s) 327
MhlI GDGCHC 1 cut(s) 800
MluCI AATT 3 cut(s) 406, 718, 895
MlyI GAGTC 2 cut(s) 310, 341
MmeI TCCRAC 2 cut(s) 452, 615
MroI TCCGGA 1 cut(s) 319
MseI TTAA 1 cut(s) 162
MslI CAYNNNNRTG 1 cut(s) 386
MspI CCGG 5 cut(s) 116, 140, 311, 320, 631
MspR9I CCNGG 2 cut(s) 560, 579
MvaI CCWGG 2 cut(s) 560, 579
MvnI CGCG 1 cut(s) 107
MwoI GCNNNNNNNGC 4 cut(s) 21, 307, 698, 707
NdeII GATC 4 cut(s) 102, 131, 188, 260
NlaIII CATG 2 cut(s) 67, 640
NlaIV GGNNCC 1 cut(s) 324
NmuCI GTSAC 5 cut(s) 149, 292, 481, 496, 815
NspI RCATGY 1 cut(s) 67
PaeR7I CTCGAG 1 cut(s) 364
PciI ACATGT 1 cut(s) 63
PcsI WCGNNNNNNNCGW 2 cut(s) 425, 623
PflMI CCANNNNNTGG 1 cut(s) 384
PkrI GCNGC 8 cut(s) 17, 50, 300, 457, 694, 730, 810, 871
Ple19I CGATCG 1 cut(s) 105
PleI GAGTC 2 cut(s) 310, 340
PmaCI CACGTG 3 cut(s) 384, 573, 738
PmlI CACGTG 3 cut(s) 384, 573, 738
PpsI GAGTC 2 cut(s) 310, 340
Ppu21I YACGTR 4 cut(s) 384, 507, 573, 738
PscI ACATGT 1 cut(s) 63
PshAI GACNNNNGTC 1 cut(s) 573
Psp124BI GAGCTC 1 cut(s) 800
Psp6I CCWGG 2 cut(s) 558, 577
PspCI CACGTG 3 cut(s) 384, 573, 738
PspGI CCWGG 2 cut(s) 558, 577
PspN4I GGNNCC 1 cut(s) 324
PspXI VCTCGAGB 1 cut(s) 364
PvuI CGATCG 1 cut(s) 105
RsaI GTAC 5 cut(s) 35, 158, 535, 629, 758
RsaNI GTAC 5 cut(s) 34, 157, 534, 628, 757
RseI CAYNNNNRTG 1 cut(s) 386
SacI GAGCTC 1 cut(s) 800
SaqAI TTAA 1 cut(s) 162
SatI GCNGC 8 cut(s) 16, 49, 299, 456, 693, 729, 809, 870
Sau3AI GATC 4 cut(s) 102, 131, 188, 260
SchI GAGTC 2 cut(s) 310, 341
ScrFI CCNGG 2 cut(s) 560, 579
SduI GDGCHC 1 cut(s) 800
Sfr274I CTCGAG 1 cut(s) 364
SlaI CTCGAG 1 cut(s) 364
SmiMI CAYNNNNRTG 1 cut(s) 386
SmlI CTYRAG 1 cut(s) 364
SmoI CTYRAG 1 cut(s) 364
Sse9I AATT 3 cut(s) 406, 718, 895
SsiI CCGC 8 cut(s) 15, 48, 51, 218, 272, 455, 701, 728
SspMI CTAG 1 cut(s) 527
SstI GAGCTC 1 cut(s) 800
StyD4I CCNGG 2 cut(s) 558, 577
TaaI ACNGT 4 cut(s) 195, 289, 487, 761
TaiI ACGT 7 cut(s) 162, 386, 509, 575, 740, 782, 822
TaqI TCGA 4 cut(s) 68, 266, 365, 396
TaqII GACCGA 1 cut(s) 115
TasI AATT 3 cut(s) 406, 718, 895
TatI WGTACW 1 cut(s) 756
TauI GCSGC 4 cut(s) 18, 51, 458, 731
Tru1I TTAA 1 cut(s) 162
Tru9I TTAA 1 cut(s) 162
TscAI CASTG 2 cut(s) 766, 910
TseFI GTSAC 5 cut(s) 149, 292, 481, 496, 815
TseI GCWGC 4 cut(s) 298, 692, 808, 869
Tsp45I GTSAC 5 cut(s) 149, 292, 481, 496, 815
TspDTI ATGAA 2 cut(s) 569, 695
TspGWI ACGGA 4 cut(s) 51, 138, 515, 551
TspRI CASTG 2 cut(s) 766, 910
Van91I CCANNNNNTGG 1 cut(s) 384
XceI RCATGY 1 cut(s) 67
XhoI CTCGAG 1 cut(s) 364
XspI CTAG 1 cut(s) 527
ZraI GACGTC 1 cut(s) 780
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.