Rw7G009900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0011674
Physical Location & Seq
Reverse (-)
9139926 .. 9140739
814 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G009900.1

Sequence Viewer

Length: 765 bp
ATGGACGGGAGAGGCGGTTGTTGTATAGCGAGGTATGGGGGAGGTGGTGGCGTTTATGATATGTCGAAGCTGGATAGAATAATGCTGAGATTCCGTCCAATCGCTCCGAAGCCGGTTGGAGGGTCAGTCTCCGGCGGATCTACGCCGGAGAATAGCGAGAACTGTAGAAGGGGAAAGAGAAGGTATGTGAGAGACAAGCGGTGCAATAACAGAAAGCGTAAGGCTTCTTCTCCGCCTGATAAGAAGAAAGTTGCTGTCACTACTCTGTCGCTGTTGCCGGAGAGTCCGGAACCTAAGCACTCTCCGGAAGAGCGTAGCTCACCCACGTGGCTGAGCTTCGACAGTTTTCCTGGGAATACCGGTCCGGAAGTGGTCGAGTCTTACGTGACGGTGGACTGCGTCACCGATACGTGGGTGGAAGGAGGAGGACTGGGGTTTACCGACGAGGAGAGGAGGATGAGCCTGGAGACGGACACGTGTCCCGGGTTCTTATCGGACGGTTATTGTAGGGTTGTTTGGACGAACCGGGCGTACAGAAGCATGGTGGGTCAGGAGAACGAGACGGATGAGGTGACGGTGTGTCTGGTGGTGAAGGAGACGGCGACTGTGACGGCGGTGGCCTTGGCTCACCCGGCGTTTACGTGCAGAGTGAGAGTGCAGTACACGTGTGGATCCATCACGCTGCCTTGTGACGTGTGGAGAATGGAGGGAGGCGGGTTTGCGTGGCGGTTGGACGTGAAAGCTGCGCTGTGTCTGGGCCGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

254

Amino Acids

27.89

Weight (kDa)

8.58

Isoelectric Point (pI)

48.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7950 PF25821 125 - 251 3.8e-49 Domain of unknown function (DUF7950)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011674)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G48510 AT5G50360 AT5G63350
fragaria_vesca FvH4_5g07700
malus_domestica MD06G1147800.v1.1 MD14G1162100.v1.1
prunus_persica Prupe.5G154700_v2.0.a1
pyrus_communis pycom14g13490 pycom72g00090
rosa_chinensis RchiOBHm_Chr7g0190771
rosa_laevigata RLG00000004500
rosa_multiflora Rmu_co8372469.1_g000001
rosa_roxburghii Rroxscaffold_3G00264340
rosa_rugosa Rorug06G0506700
rosa_samantha Rh7AG113400 Rh7BG115900 Rh7CG118400 Rh7DG117400
rosa_wichuraiana Rw7G009900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 3 cut(s) 286, 304, 364
AciI CCGC 7 cut(s) 15, 135, 199, 233, 614, 714, 727
AclWI GGATC 3 cut(s) 145, 666, 679
AcvI CACGTG 3 cut(s) 327, 477, 666
AfaI GTAC 2 cut(s) 533, 662
AfiI CCNNNNNNNGG 3 cut(s) 119, 411, 469
AflIII ACRYGT 5 cut(s) 474, 476, 663, 665, 693
AgeI ACCGGT 1 cut(s) 359
AhdI GACNNNNNGTC 1 cut(s) 579
AjiI CACGTC 2 cut(s) 694, 736
AjnI CCWGG 2 cut(s) 349, 462
AleI CACNNNNGTG 1 cut(s) 325
AluBI AGCT 4 cut(s) 70, 318, 336, 743
AluI AGCT 4 cut(s) 70, 318, 336, 743
Alw26I GTCTC 5 cut(s) 133, 186, 461, 554, 590
AlwI GGATC 3 cut(s) 145, 666, 679
Ama87I CYCGRG 1 cut(s) 482
Aor13HI TCCGGA 3 cut(s) 286, 304, 364
AoxI GGCC 2 cut(s) 618, 757
ApeKI GCWGC 2 cut(s) 682, 743
AsiGI ACCGGT 1 cut(s) 359
AspLEI GCGC 1 cut(s) 748
AspS9I GGNCC 2 cut(s) 362, 757
AsuC2I CCSGG 4 cut(s) 483, 484, 527, 632
AsuHPI GGTGA 5 cut(s) 312, 394, 583, 601, 620
AvaI CYCGRG 1 cut(s) 482
AvaII GGWCC 1 cut(s) 362
BaeI ACNNNNGTAYC 2 cut(s) 399, 432
BamHI GGATCC 1 cut(s) 671
BarI GAAGNNNNNNTAC 2 cut(s) 211, 243
BbrPI CACGTG 3 cut(s) 327, 477, 666
BbvI GCAGC 2 cut(s) 669, 730
BccI CCATC 1 cut(s) 683
BceAI ACGGC 2 cut(s) 615, 627
BciT130I CCWGG 2 cut(s) 351, 464
BcnI CCSGG 4 cut(s) 483, 484, 527, 632
BcoDI GTCTC 5 cut(s) 133, 186, 461, 554, 590
BfmI CTRYAG 1 cut(s) 163
BisI GCNGC 2 cut(s) 683, 744
BlpI GCTNAGC 1 cut(s) 332
BlsI GCNGC 2 cut(s) 684, 745
Bme1390I CCNGG 6 cut(s) 351, 464, 483, 484, 527, 632
Bme18I GGWCC 1 cut(s) 362
BmeRI GACNNNNNGTC 1 cut(s) 579
BmeT110I CYCGRG 1 cut(s) 482
BmgBI CACGTC 2 cut(s) 694, 736
BmgT120I GGNCC 2 cut(s) 362, 757
BmiI GGNNCC 2 cut(s) 291, 673
BmrFI CCNGG 6 cut(s) 351, 464, 483, 484, 527, 632
BmrI ACTGGG 1 cut(s) 440
BmuI ACTGGG 1 cut(s) 440
BoxI GACNNNNGTC 1 cut(s) 477
BplI GAGNNNNNCTC 2 cut(s) 302, 334
BpmI CTGGAG 1 cut(s) 485
Bpu10I CCTNAGC 1 cut(s) 294
Bpu1102I GCTNAGC 1 cut(s) 332
BpuMI CCSGG 4 cut(s) 483, 484, 527, 632
BsaAI YACGTR 6 cut(s) 327, 385, 411, 477, 642, 666
BsaJI CCNNGG 3 cut(s) 350, 482, 621
BsaWI WCCGGW 4 cut(s) 286, 304, 359, 364
BsaXI ACNNNNNCTCC 3 cut(s) 31, 111, 141
Bsc4I CCNNNNNNNGG 3 cut(s) 119, 411, 469
Bse118I RCCGGY 3 cut(s) 112, 359, 759
Bse1I ACTGG 1 cut(s) 435
BseAI TCCGGA 3 cut(s) 286, 304, 364
BseBI CCWGG 2 cut(s) 351, 464
BseDI CCNNGG 3 cut(s) 350, 482, 621
BseGI GGATG 2 cut(s) 462, 571
BseLI CCNNNNNNNGG 3 cut(s) 119, 411, 469
BseMII CTCAG 2 cut(s) 77, 323
BseNI ACTGG 1 cut(s) 435
BseRI GAGGAG 3 cut(s) 438, 461, 466
BseXI GCAGC 2 cut(s) 669, 730
BsgI GTGCAG 2 cut(s) 664, 677
BshFI GGCC 2 cut(s) 620, 759
BshTI ACCGGT 1 cut(s) 359
BsiHKCI CYCGRG 1 cut(s) 482
BslFI GGGAC 1 cut(s) 465
BslI CCNNNNNNNGG 3 cut(s) 119, 411, 469
BsmAI GTCTC 5 cut(s) 133, 186, 461, 554, 590
BsmBI CGTCTC 3 cut(s) 461, 554, 590
BsmFI GGGAC 1 cut(s) 465
BsnI GGCC 2 cut(s) 620, 759
BsoBI CYCGRG 1 cut(s) 482
Bsp13I TCCGGA 3 cut(s) 286, 304, 364
Bsp143I GATC 2 cut(s) 137, 671
Bsp1720I GCTNAGC 1 cut(s) 332
BspACI CCGC 7 cut(s) 15, 135, 199, 233, 614, 714, 727
BspANI GGCC 2 cut(s) 620, 759
BspCNI CTCAG 2 cut(s) 78, 324
BspEI TCCGGA 3 cut(s) 286, 304, 364
BspLI GGNNCC 2 cut(s) 291, 673
BspPI GGATC 3 cut(s) 145, 666, 679
BspQI GCTCTTC 1 cut(s) 303
BsrFI RCCGGY 3 cut(s) 112, 359, 759
BsrI ACTGG 1 cut(s) 435
BssAI RCCGGY 3 cut(s) 112, 359, 759
BssECI CCNNGG 3 cut(s) 350, 482, 621
BssMI GATC 2 cut(s) 137, 671
BssT1I CCWWGG 1 cut(s) 621
Bst2UI CCWGG 2 cut(s) 351, 464
Bst4CI ACNGT 6 cut(s) 164, 344, 391, 500, 577, 607
Bst6I CTCTTC 1 cut(s) 303
BstBAI YACGTR 6 cut(s) 327, 385, 411, 477, 642, 666
BstDEI CTNAG 3 cut(s) 86, 294, 332
BstF5I GGATG 2 cut(s) 462, 571
BstHHI GCGC 1 cut(s) 748
BstKTI GATC 2 cut(s) 140, 674
BstMAI GTCTC 5 cut(s) 133, 186, 461, 554, 590
BstMBI GATC 2 cut(s) 137, 671
BstMWI GCNNNNNNNGC 1 cut(s) 632
BstNI CCWGG 2 cut(s) 351, 464
BstPAI GACNNNNGTC 1 cut(s) 477
BstSCI CCNGG 6 cut(s) 349, 462, 481, 482, 525, 630
BstSFI CTRYAG 1 cut(s) 163
BstV1I GCAGC 2 cut(s) 669, 730
BstX2I RGATCY 2 cut(s) 137, 671
BstYI RGATCY 2 cut(s) 137, 671
BsuRI GGCC 2 cut(s) 620, 759
BtrI CACGTC 2 cut(s) 694, 736
BtsCI GGATG 2 cut(s) 462, 571
CfoI GCGC 1 cut(s) 748
Cfr10I RCCGGY 3 cut(s) 112, 359, 759
Cfr13I GGNCC 2 cut(s) 362, 757
Cfr9I CCCGGG 1 cut(s) 482
CpoI CGGWCCG 1 cut(s) 362
CseI GACGC 1 cut(s) 388
Csp6I GTAC 2 cut(s) 532, 661
CspAI ACCGGT 1 cut(s) 359
CspI CGGWCCG 1 cut(s) 362
CviAII CATG 1 cut(s) 541
CviQI GTAC 2 cut(s) 532, 661
DdeI CTNAG 3 cut(s) 86, 294, 332
DpnI GATC 2 cut(s) 139, 673
DpnII GATC 2 cut(s) 137, 671
DriI GACNNNNNGTC 1 cut(s) 579
Eam1104I CTCTTC 1 cut(s) 303
Eam1105I GACNNNNNGTC 1 cut(s) 579
EarI CTCTTC 1 cut(s) 303
EciI GGCGGA 2 cut(s) 150, 222
Eco130I CCWWGG 1 cut(s) 621
Eco47I GGWCC 1 cut(s) 362
Eco72I CACGTG 3 cut(s) 327, 477, 666
Eco88I CYCGRG 1 cut(s) 482
EcoRII CCWGG 2 cut(s) 349, 462
EcoT14I CCWWGG 1 cut(s) 621
ErhI CCWWGG 1 cut(s) 621
Esp3I CGTCTC 3 cut(s) 461, 554, 590
FaeI CATG 1 cut(s) 544
FaiI YATR 6 cut(s) 26, 36, 57, 62, 186, 542
FaqI GGGAC 1 cut(s) 465
FatI CATG 1 cut(s) 540
FauI CCCGC 1 cut(s) 707
Fnu4HI GCNGC 2 cut(s) 683, 744
FokI GGATG 2 cut(s) 469, 578
Fsp4HI GCNGC 2 cut(s) 683, 744
GlaI GCGC 1 cut(s) 747
GluI GCNGC 2 cut(s) 683, 744
GsuI CTGGAG 1 cut(s) 485
HaeIII GGCC 2 cut(s) 620, 759
HgaI GACGC 1 cut(s) 388
HhaI GCGC 1 cut(s) 748
Hin1II CATG 1 cut(s) 544
Hin6I GCGC 1 cut(s) 746
HinP1I GCGC 1 cut(s) 746
HinfI GANTC 3 cut(s) 90, 283, 377
HphI GGTGA 5 cut(s) 312, 394, 583, 601, 620
Hpy166II GTNNAC 4 cut(s) 394, 438, 639, 663
Hpy188I TCNGA 2 cut(s) 108, 496
Hpy188III TCNNGA 4 cut(s) 287, 305, 365, 551
Hpy8I GTNNAC 4 cut(s) 394, 438, 639, 663
Hpy99I CGWCG 1 cut(s) 446
HpyAV CCTTC 4 cut(s) 162, 174, 413, 586
HpyCH4III ACNGT 6 cut(s) 164, 344, 391, 500, 577, 607
HpyCH4IV ACGT 8 cut(s) 326, 384, 410, 476, 641, 665, 693, 735
HpyCH4V TGCA 3 cut(s) 204, 645, 658
HpyF10VI GCNNNNNNNGC 1 cut(s) 632
HpyF3I CTNAG 3 cut(s) 86, 294, 332
HpySE526I ACGT 8 cut(s) 326, 384, 410, 476, 641, 665, 693, 735
Hsp92II CATG 1 cut(s) 544
HspAI GCGC 1 cut(s) 746
Kpn2I TCCGGA 3 cut(s) 286, 304, 364
Kzo9I GATC 2 cut(s) 137, 671
LguI GCTCTTC 1 cut(s) 303
LmnI GCTCC 1 cut(s) 109
Lsp1109I GCAGC 2 cut(s) 669, 730
MaeII ACGT 8 cut(s) 326, 384, 410, 476, 641, 665, 693, 735
MaeIII GTNAC 6 cut(s) 256, 385, 400, 571, 607, 689
MalI GATC 2 cut(s) 139, 673
MboI GATC 2 cut(s) 137, 671
MboII GAAGA 3 cut(s) 219, 256, 320
MflI RGATCY 2 cut(s) 137, 671
MlyI GAGTC 2 cut(s) 292, 386
MmeI TCCRAC 2 cut(s) 97, 711
MroI TCCGGA 3 cut(s) 286, 304, 364
MslI CAYNNNNRTG 1 cut(s) 325
MspR9I CCNGG 6 cut(s) 351, 464, 483, 484, 527, 632
MvaI CCWGG 2 cut(s) 351, 464
MwoI GCNNNNNNNGC 1 cut(s) 632
NciI CCSGG 4 cut(s) 483, 484, 527, 632
NdeII GATC 2 cut(s) 137, 671
NlaIII CATG 1 cut(s) 544
NlaIV GGNNCC 2 cut(s) 291, 673
NmuCI GTSAC 6 cut(s) 256, 385, 400, 571, 607, 689
OliI CACNNNNGTG 1 cut(s) 325
PciSI GCTCTTC 1 cut(s) 303
PcsI WCGNNNNNNNCGW 2 cut(s) 381, 527
PfeI GAWTC 1 cut(s) 90
PflFI GACNNNGTC 1 cut(s) 398
PinAI ACCGGT 1 cut(s) 359
PkrI GCNGC 2 cut(s) 684, 745
PleI GAGTC 2 cut(s) 291, 385
PmaCI CACGTG 3 cut(s) 327, 477, 666
PmlI CACGTG 3 cut(s) 327, 477, 666
PpsI GAGTC 2 cut(s) 291, 385
Ppu21I YACGTR 6 cut(s) 327, 385, 411, 477, 642, 666
PshAI GACNNNNGTC 1 cut(s) 477
Psp6I CCWGG 2 cut(s) 349, 462
PspCI CACGTG 3 cut(s) 327, 477, 666
PspGI CCWGG 2 cut(s) 349, 462
PspN4I GGNNCC 2 cut(s) 291, 673
PspPI GGNCC 2 cut(s) 362, 757
PsrI GAACNNNNNNTAC 2 cut(s) 515, 547
PsuI RGATCY 2 cut(s) 137, 671
PsyI GACNNNGTC 1 cut(s) 398
RsaI GTAC 2 cut(s) 533, 662
RsaNI GTAC 2 cut(s) 532, 661
RseI CAYNNNNRTG 1 cut(s) 325
Rsr2I CGGWCCG 1 cut(s) 362
RsrII CGGWCCG 1 cut(s) 362
SapI GCTCTTC 1 cut(s) 303
SatI GCNGC 2 cut(s) 683, 744
Sau3AI GATC 2 cut(s) 137, 671
Sau96I GGNCC 2 cut(s) 362, 757
SchI GAGTC 2 cut(s) 292, 386
ScrFI CCNGG 6 cut(s) 351, 464, 483, 484, 527, 632
SfcI CTRYAG 1 cut(s) 163
SinI GGWCC 1 cut(s) 362
SmaI CCCGGG 1 cut(s) 484
SmiMI CAYNNNNRTG 1 cut(s) 325
SsiI CCGC 7 cut(s) 15, 135, 199, 233, 614, 714, 727
StyD4I CCNGG 6 cut(s) 349, 462, 481, 482, 525, 630
StyI CCWWGG 1 cut(s) 621
TaaI ACNGT 6 cut(s) 164, 344, 391, 500, 577, 607
TaiI ACGT 8 cut(s) 329, 387, 413, 479, 644, 668, 696, 738
TaqI TCGA 3 cut(s) 65, 339, 375
TatI WGTACW 1 cut(s) 660
TfiI GAWTC 1 cut(s) 90
TseFI GTSAC 6 cut(s) 256, 385, 400, 571, 607, 689
TseI GCWGC 2 cut(s) 682, 743
Tsp45I GTSAC 6 cut(s) 256, 385, 400, 571, 607, 689
TspGWI ACGGA 3 cut(s) 83, 485, 578
TspMI CCCGGG 1 cut(s) 482
Tth111I GACNNNGTC 1 cut(s) 398
VpaK11BI GGWCC 1 cut(s) 362
XmaI CCCGGG 1 cut(s) 482
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.