Prupe.5G154700_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0011674
Physical Location & Seq
Reverse (-)
13861761 .. 13862707
947 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G154700.1

Sequence Viewer

Length: 912 bp
ATGGATGGGAGAGGAGGGTGTTGTATAGCGAGGTACGGAGGAGAATATGATATGTCGCAGGTGGATAGGATAATGTTGCGGTTCAGACCGATTGCTCCGAAGCCGGTCAACGGAGGAGGGTTGGATTCCGGTGGGTCACCCCCCGAAAACGGTGACGTTTACGTTAAGATTCGGAGGTGTGTGAAGCAGGGTTGCAATAATAATAATAATAATAATAATAATAATACCAGTAAGAGAAGGAGATCTTCGAAGGGTTTGGGTGAGGAAAAGACGGTTGTGACCCTGCCTCTGTTGCCGGAGACCCCTGAGCCAAAAGGCTCGGAGAGAGAGAGGAAGTCGAGTGGTTACTCGGCCACGTGGCTGAGTTTCGAGAGTTTCGAGAGTAATAGTAGTAGTATTTCTTCTACGACATGTCGTAGGAGTAAGGTGGTGGGGGAGGAGATGAGTACGATGAATAATATGCAGCAGCGGCGGCCGGTGAGGGTGGTCGGGTCGTGCGTGACGGTGGACTGCGTGACGGACACGTGGGTGGGCGGAGATGGACTAGGGCGTACGGACGTGGAGAGGAGGATGAATCTGGAGAGGGACACGTGTCCGGGGTTTGTATCGGACGGTGCGGGGAGGGTGGTGTGGACGAATGGGGCCTACAGGAGCATGGTGGGGGAGCAGGAGGAAAGGGAGACGATGGTGTGGCTGGTGACGAAGGAGAGGGCGGCGAAGGCGGTGGGTGTGATGAGTAATTACGACACGGCGGCATTCTCGTGCAGGGTGAGGGTGCAGTACAGCGGGTGCGGTGGGTCGTCGGCAAGGGATTGGAGCTCGTTGACGCTGCCGTGTGACGTGTGGAGGATGGAGAGTGGCGGGTTCGCGTGGAGGCTGGACGTGAAGGCTGCTCTTTGCTTGGGTCGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

304

Amino Acids

33.3

Weight (kDa)

8.93

Isoelectric Point (pI)

48.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011674)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G48510 AT5G50360 AT5G63350
fragaria_vesca FvH4_5g07700
malus_domestica MD06G1147800.v1.1 MD14G1162100.v1.1
prunus_persica Prupe.5G154700_v2.0.a1
pyrus_communis pycom14g13490 pycom72g00090
rosa_chinensis RchiOBHm_Chr7g0190771
rosa_laevigata RLG00000004500
rosa_multiflora Rmu_co8372469.1_g000001
rosa_roxburghii Rroxscaffold_3G00264340
rosa_rugosa Rorug06G0506700
rosa_samantha Rh7AG113400 Rh7BG115900 Rh7CG118400 Rh7DG117400
rosa_wichuraiana Rw7G009900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 49
Acc36I ACCTGC 1 cut(s) 49
AccII CGCG 1 cut(s) 869
AcoI YGGCCR 2 cut(s) 351, 473
AcvI CACGTG 3 cut(s) 357, 525, 591
AfaI GTAC 4 cut(s) 35, 448, 553, 782
AfiI CCNNNNNNNGG 2 cut(s) 110, 149
AflIII ACRYGT 5 cut(s) 410, 522, 588, 590, 840
AjiI CACGTC 3 cut(s) 559, 841, 883
AleI CACNNNNGTG 1 cut(s) 527
AluBI AGCT 1 cut(s) 819
AluI AGCT 1 cut(s) 819
Alw21I GWGCWC 1 cut(s) 821
Alw26I GTCTC 2 cut(s) 293, 674
AoxI GGCC 3 cut(s) 351, 473, 642
ApeKI GCWGC 4 cut(s) 463, 466, 829, 890
AspS9I GGNCC 1 cut(s) 642
AsuC2I CCSGG 1 cut(s) 597
AsuHPI GGTGA 6 cut(s) 129, 164, 272, 490, 709, 781
AsuII TTCGAA 1 cut(s) 248
BanII GRGCYC 1 cut(s) 821
BarI GAAGNNNNNNTAC 2 cut(s) 385, 417
BauI CACGAG 1 cut(s) 760
BbrPI CACGTG 3 cut(s) 357, 525, 591
Bbv12I GWGCWC 1 cut(s) 821
BbvI GCAGC 4 cut(s) 475, 478, 816, 877
BccI CCATC 3 cut(s) 533, 679, 844
BceAI ACGGC 2 cut(s) 765, 817
BcnI CCSGG 1 cut(s) 597
BcoDI GTCTC 2 cut(s) 293, 674
BfaI CTAG 1 cut(s) 545
BfmI CTRYAG 1 cut(s) 646
BfuAI ACCTGC 1 cut(s) 49
BglII AGATCT 1 cut(s) 242
BisI GCNGC 8 cut(s) 464, 467, 470, 473, 714, 753, 830, 891
BlsI GCNGC 8 cut(s) 465, 468, 471, 474, 715, 754, 831, 892
Bme1390I CCNGG 1 cut(s) 597
BmgBI CACGTC 3 cut(s) 559, 841, 883
BmgT120I GGNCC 1 cut(s) 642
BmiI GGNNCC 1 cut(s) 643
BmrFI CCNGG 1 cut(s) 597
BoxI GACNNNNGTC 1 cut(s) 591
BpmI CTGGAG 1 cut(s) 599
Bpu10I CCTNAGC 1 cut(s) 306
Bpu14I TTCGAA 1 cut(s) 248
BpuMI CCSGG 1 cut(s) 597
BsaAI YACGTR 3 cut(s) 357, 525, 591
BsaI GGTCTC 1 cut(s) 293
BsaJI CCNNGG 1 cut(s) 596
BsaWI WCCGGW 1 cut(s) 128
Bsc4I CCNNNNNNNGG 2 cut(s) 110, 149
Bse118I RCCGGY 2 cut(s) 103, 475
Bse1I ACTGG 1 cut(s) 228
BseDI CCNNGG 1 cut(s) 596
BseGI GGATG 3 cut(s) 10, 576, 855
BseLI CCNNNNNNNGG 2 cut(s) 110, 149
BseMII CTCAG 2 cut(s) 297, 353
BseNI ACTGG 1 cut(s) 228
BseRI GAGGAG 5 cut(s) 27, 54, 129, 452, 580
BseX3I CGGCCG 1 cut(s) 473
BseXI GCAGC 4 cut(s) 475, 478, 816, 877
BsgI GTGCAG 2 cut(s) 784, 797
Bsh1236I CGCG 1 cut(s) 869
Bsh1285I CGRYCG 1 cut(s) 476
BshFI GGCC 3 cut(s) 353, 475, 644
BsiEI CGRYCG 1 cut(s) 476
BsiHKAI GWGCWC 1 cut(s) 821
BsiSI CCGG 5 cut(s) 104, 129, 296, 476, 596
BsiWI CGTACG 1 cut(s) 551
BslFI GGGAC 1 cut(s) 599
BslI CCNNNNNNNGG 2 cut(s) 110, 149
BsmAI GTCTC 2 cut(s) 293, 674
BsmBI CGTCTC 1 cut(s) 674
BsmFI GGGAC 1 cut(s) 599
BsmI GAATGC 1 cut(s) 755
BsnI GGCC 3 cut(s) 353, 475, 644
Bso31I GGTCTC 1 cut(s) 293
Bsp119I TTCGAA 1 cut(s) 248
Bsp1286I GDGCHC 1 cut(s) 821
Bsp143I GATC 1 cut(s) 242
BspANI GGCC 3 cut(s) 353, 475, 644
BspCNI CTCAG 2 cut(s) 298, 354
BspFNI CGCG 1 cut(s) 869
BspLI GGNNCC 1 cut(s) 643
BspMI ACCTGC 1 cut(s) 49
BspT104I TTCGAA 1 cut(s) 248
BspTNI GGTCTC 1 cut(s) 293
BsrFI RCCGGY 2 cut(s) 103, 475
BsrI ACTGG 1 cut(s) 228
BssAI RCCGGY 2 cut(s) 103, 475
BssECI CCNNGG 1 cut(s) 596
BssMI GATC 1 cut(s) 242
BssSI CACGAG 1 cut(s) 760
Bst2BI CACGAG 1 cut(s) 760
Bst4CI ACNGT 4 cut(s) 152, 274, 505, 614
BstBAI YACGTR 3 cut(s) 357, 525, 591
BstBI TTCGAA 1 cut(s) 248
BstDEI CTNAG 2 cut(s) 306, 362
BstEII GGTNACC 1 cut(s) 135
BstF5I GGATG 3 cut(s) 10, 576, 855
BstFNI CGCG 1 cut(s) 869
BstKTI GATC 1 cut(s) 245
BstMAI GTCTC 2 cut(s) 293, 674
BstMBI GATC 1 cut(s) 242
BstMCI CGRYCG 1 cut(s) 476
BstMWI GCNNNNNNNGC 4 cut(s) 292, 469, 472, 719
BstNSI RCATGY 1 cut(s) 414
BstPAI GACNNNNGTC 1 cut(s) 591
BstPI GGTNACC 1 cut(s) 135
BstSCI CCNGG 1 cut(s) 595
BstSFI CTRYAG 1 cut(s) 646
BstUI CGCG 1 cut(s) 869
BstV1I GCAGC 4 cut(s) 475, 478, 816, 877
BstX2I RGATCY 1 cut(s) 242
BstYI RGATCY 1 cut(s) 242
BstZI CGGCCG 1 cut(s) 473
BsuRI GGCC 3 cut(s) 353, 475, 644
BtrI CACGTC 3 cut(s) 559, 841, 883
BtsCI GGATG 3 cut(s) 10, 576, 855
BveI ACCTGC 1 cut(s) 49
Cfr10I RCCGGY 2 cut(s) 103, 475
Cfr13I GGNCC 1 cut(s) 642
CseI GACGC 1 cut(s) 835
Csp6I GTAC 4 cut(s) 34, 447, 552, 781
CviAII CATG 2 cut(s) 411, 655
CviQI GTAC 4 cut(s) 34, 447, 552, 781
DdeI CTNAG 2 cut(s) 306, 362
DpnI GATC 1 cut(s) 244
DpnII GATC 1 cut(s) 242
EaeI YGGCCR 2 cut(s) 351, 473
EagI CGGCCG 1 cut(s) 473
EciI GGCGGA 1 cut(s) 549
Ecl136II GAGCTC 1 cut(s) 819
EclXI CGGCCG 1 cut(s) 473
Eco24I GRGCYC 1 cut(s) 821
Eco31I GGTCTC 1 cut(s) 293
Eco52I CGGCCG 1 cut(s) 473
Eco53kI GAGCTC 1 cut(s) 819
Eco72I CACGTG 3 cut(s) 357, 525, 591
Eco91I GGTNACC 1 cut(s) 135
EcoICRI GAGCTC 1 cut(s) 819
EcoO109I RGGNCCY 1 cut(s) 642
EcoO65I GGTNACC 1 cut(s) 135
EcoT38I GRGCYC 1 cut(s) 821
Esp3I CGTCTC 1 cut(s) 674
FaeI CATG 2 cut(s) 414, 658
FaiI YATR 6 cut(s) 26, 48, 53, 412, 461, 656
FalI AAGNNNNNCTT 2 cut(s) 229, 261
FaqI GGGAC 1 cut(s) 599
FatI CATG 2 cut(s) 410, 654
FauI CCCGC 3 cut(s) 610, 779, 854
Fnu4HI GCNGC 8 cut(s) 464, 467, 470, 473, 714, 753, 830, 891
FokI GGATG 3 cut(s) 17, 583, 862
FriOI GRGCYC 1 cut(s) 821
Fsp4HI GCNGC 8 cut(s) 464, 467, 470, 473, 714, 753, 830, 891
FspBI CTAG 1 cut(s) 545
GluI GCNGC 8 cut(s) 464, 467, 470, 473, 714, 753, 830, 891
GsuI CTGGAG 1 cut(s) 599
HaeIII GGCC 3 cut(s) 353, 475, 644
HapII CCGG 5 cut(s) 104, 129, 296, 476, 596
HgaI GACGC 1 cut(s) 835
Hin1II CATG 2 cut(s) 414, 658
HincII GTYRAC 2 cut(s) 109, 825
HindII GTYRAC 2 cut(s) 109, 825
HinfI GANTC 3 cut(s) 125, 169, 574
HpaII CCGG 5 cut(s) 104, 129, 296, 476, 596
HphI GGTGA 6 cut(s) 129, 164, 272, 490, 709, 781
Hpy166II GTNNAC 5 cut(s) 109, 160, 508, 633, 825
Hpy188I TCNGA 5 cut(s) 86, 99, 174, 322, 610
Hpy188III TCNNGA 3 cut(s) 370, 379, 578
Hpy8I GTNNAC 5 cut(s) 109, 160, 508, 633, 825
Hpy99I CGWCG 1 cut(s) 805
HpyAV CCTTC 5 cut(s) 231, 244, 697, 712, 880
HpyCH4III ACNGT 4 cut(s) 152, 274, 505, 614
HpyCH4IV ACGT 8 cut(s) 156, 162, 356, 524, 558, 590, 840, 882
HpyCH4V TGCA 4 cut(s) 195, 463, 765, 778
HpyF10VI GCNNNNNNNGC 4 cut(s) 292, 469, 472, 719
HpyF3I CTNAG 2 cut(s) 306, 362
HpySE526I ACGT 8 cut(s) 156, 162, 356, 524, 558, 590, 840, 882
Hsp92II CATG 2 cut(s) 414, 658
Kzo9I GATC 1 cut(s) 242
LmnI GCTCC 4 cut(s) 100, 651, 664, 816
Lsp1109I GCAGC 4 cut(s) 475, 478, 816, 877
MaeI CTAG 1 cut(s) 545
MaeII ACGT 8 cut(s) 156, 162, 356, 524, 558, 590, 840, 882
MaeIII GTNAC 8 cut(s) 135, 152, 277, 344, 499, 514, 697, 836
MalI GATC 1 cut(s) 244
MboI GATC 1 cut(s) 242
MboII GAAGA 2 cut(s) 237, 393
MflI RGATCY 1 cut(s) 242
MhlI GDGCHC 1 cut(s) 821
MluCI AATT 1 cut(s) 739
MmeI TCCRAC 1 cut(s) 102
MseI TTAA 1 cut(s) 165
MslI CAYNNNNRTG 2 cut(s) 527, 760
MspA1I CMGCKG 2 cut(s) 469, 786
MspI CCGG 5 cut(s) 104, 129, 296, 476, 596
MspR9I CCNGG 1 cut(s) 597
Mva1269I GAATGC 1 cut(s) 755
MvnI CGCG 1 cut(s) 869
MwoI GCNNNNNNNGC 4 cut(s) 292, 469, 472, 719
NciI CCSGG 1 cut(s) 597
NdeII GATC 1 cut(s) 242
NlaIII CATG 2 cut(s) 414, 658
NlaIV GGNNCC 1 cut(s) 643
NmeAIII GCCGAG 1 cut(s) 329
NmuCI GTSAC 7 cut(s) 135, 152, 277, 499, 514, 697, 836
NspI RCATGY 1 cut(s) 414
NspV TTCGAA 1 cut(s) 248
OliI CACNNNNGTG 1 cut(s) 527
PaqCI CACCTGC 1 cut(s) 49
PciI ACATGT 1 cut(s) 410
PcsI WCGNNNNNNNCGW 2 cut(s) 375, 495
PctI GAATGC 1 cut(s) 755
PfeI GAWTC 3 cut(s) 125, 169, 574
Pfl23II CGTACG 1 cut(s) 551
PkrI GCNGC 8 cut(s) 465, 468, 471, 474, 715, 754, 831, 892
PmaCI CACGTG 3 cut(s) 357, 525, 591
PmlI CACGTG 3 cut(s) 357, 525, 591
Ppu21I YACGTR 3 cut(s) 357, 525, 591
PscI ACATGT 1 cut(s) 410
PshAI GACNNNNGTC 1 cut(s) 591
Psp124BI GAGCTC 1 cut(s) 821
PspCI CACGTG 3 cut(s) 357, 525, 591
PspEI GGTNACC 1 cut(s) 135
PspLI CGTACG 1 cut(s) 551
PspN4I GGNNCC 1 cut(s) 643
PspPI GGNCC 1 cut(s) 642
PsuI RGATCY 1 cut(s) 242
RsaI GTAC 4 cut(s) 35, 448, 553, 782
RsaNI GTAC 4 cut(s) 34, 447, 552, 781
RseI CAYNNNNRTG 2 cut(s) 527, 760
SacI GAGCTC 1 cut(s) 821
SaqAI TTAA 1 cut(s) 165
SatI GCNGC 8 cut(s) 464, 467, 470, 473, 714, 753, 830, 891
Sau3AI GATC 1 cut(s) 242
Sau96I GGNCC 1 cut(s) 642
ScrFI CCNGG 1 cut(s) 597
SduI GDGCHC 1 cut(s) 821
SfcI CTRYAG 1 cut(s) 646
SfuI TTCGAA 1 cut(s) 248
SmiMI CAYNNNNRTG 2 cut(s) 527, 760
Sse9I AATT 1 cut(s) 739
SspMI CTAG 1 cut(s) 545
SstI GAGCTC 1 cut(s) 821
StyD4I CCNGG 1 cut(s) 595
TaaI ACNGT 4 cut(s) 152, 274, 505, 614
TaiI ACGT 8 cut(s) 159, 165, 359, 527, 561, 593, 843, 885
TaqI TCGA 4 cut(s) 248, 338, 369, 378
TaqII GACCGA 1 cut(s) 103
TasI AATT 1 cut(s) 739
TatI WGTACW 1 cut(s) 780
TauI GCSGC 4 cut(s) 472, 475, 716, 755
TfiI GAWTC 3 cut(s) 125, 169, 574
Tru1I TTAA 1 cut(s) 165
Tru9I TTAA 1 cut(s) 165
TseFI GTSAC 7 cut(s) 135, 152, 277, 499, 514, 697, 836
TseI GCWGC 4 cut(s) 463, 466, 829, 890
Tsp45I GTSAC 7 cut(s) 135, 152, 277, 499, 514, 697, 836
TspDTI ATGAA 2 cut(s) 467, 587
TspGWI ACGGA 4 cut(s) 51, 126, 533, 569
XceI RCATGY 1 cut(s) 414
XspI CTAG 1 cut(s) 545
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.