Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007142

Physical Location & Seq

Genomic Coordinates Forward (+)

18255961 .. 18258203

Gene Structure 2243 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G49240.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1890 bp

ATGTCGATTTCTAAAGCCGCCTTTTTAAACCACCTTCAAACACTATCAAGATCCTACCGCCACCGTGTTCTGCCGCAGCCATTTCTCGCCGTCCGATACATGTCATTCGCGACTCAGGAAGAAGCCGCCGCTGAACGTCGCCGTCGTAAGCGTCGTCTTCGTATGGAGCCACCGGTTAATTCATTCAACAGATCTCAGCAACAACAATCTCAAATCCCTCGACCAATTCAAAACCCTAATATCCCGAAATTACCTGAATCTGTCTCTGCTCTCGTTGGGAAACGTCTCGATCTTCATAATCATATCCTGAAATTGATCCGAGAGAATGATTTAGAAGAAGCTGCTCTGTACACTCGTCACTCTGTGTATTCGAATTGCCGTCCCACGATTTTCACTGTGAATACTGTTTTAGCGGCGCAGCTTCGACAAGCTAAGTATGGAGCGCTTCTGCAATTGCATGGATTCATTAATCAAGCTGGTATTGCACCTAATATCATCACATACAATTTGATATTCCAGGCTTATCTTGATGTAAGGAAACCTGAAATTGCGTTGGAGCATTACAAGTTGTTTATAGATAATGCTCCATTGAATCCTTCTATTGCTACTTTTAGGATTTTAGTTAAGGGTTTAGTTAGTAATGACAATCTTGAGAAAGCAATGGAGATTAAAGAGGATATGGCTGTTAAAGGTTTTGTGGTGGATCCTGTTGTTTATAGTTATCTAATGATGGGGTGTGTGAAGAATTCTGATGCTGATGGTGTGTTAAAGCTTTATCAGGAGTTAAAGGAGAAGCTTGGTGGGTTTGTTGATGATGGTGTGGTTTATGGGCAATTGATGAAGGGGTATTTCATGAAGGAGATGGAGAAAGAGGCTATGGAGTGTTATGAGGAAGCTGTTGGAGAGAATTCAAAGGTTAGGATGAGTGCTATGGCTTATAATTATGTGCTGGAGGCTTTGAGTGAGAATGGGAAGTTTGATGAGGCTTTGAAGTTGTTTGATGCGGTGAAAAAGGAACATAATCCACCGAGGCATTTGGCTGTAAATTTGGGAACTTTTAATGTGATGGTTAATGGGTACTGTGCTGGAGGAAAGTTTGAGGAAGCTATGGAGGTTTTTAGGCAAATGGGTGATTTTAAGTGTAGTCCTGATACTTTATCGTTCAACAATCTGATGAATCAGCTGTGTGACAACGAGTTGTTGGCTGAGGCTGAGAAGCTTTATGGTGAAATGGAAGAGAAAAATGTGAAGCCTGATGAGTACACATATGGTTTGTTAATGGATACTTGTTTCAAGGAAGGTAAGATAGATGAAGGAGCTGCGTATTACAAAACAATGGTTGAGTCTAATCTAAGACCAAATTTGGCTGTGTATAACCGTTTGCAAGATCAGTTGATCAAAGCTGGGAAACTCGACGATGCAAAATCTTTCTTCGATATGATGGTGAGCAAACTCAAGATGGACGATGAGGCTTACAAATTCATCATGAGGGCGTTAAGTGAAGCTGGTAGACTCGACGAGATGCTCAAGATTGTGGATGAGATGCTGGATGATGACACGGTAAGAGTGAGTGAGGAACTGCAAGAGTTTGTGAAAGAAGAACTGAGGAAAGGAGGAAGAGAGGGAGATCTGGAGAAACTAATGGAAGAGAAAGAGAGATTGAAAGCAGAGGCAAAGGCGAAAGAGTTAGCAGATGCAGAAGAGAAGAAGAAGGCTCAAAGTATTAACATAGCTGCATTAATTCCTCCAAAAGCAGTGGAAGAAAAGAAAGAAACCGCAAAACTGCTTTGGGAAAACGAAGCTGGTGGTGTTGAAGAAGCCGATGTGGTGGAGATGGCTAAAGGAGTAGAAGCAGGTGGATCCAATGGTCAGGATCCACCGTCCTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000166 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006349 GO:0006725 GO:0006807 GO:0007275 GO:0008144 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009960 GO:0009987 GO:0010154 GO:0010468 GO:0016070 GO:0016787 GO:0016788 GO:0017076 GO:0019222 GO:0022414 GO:0030554 GO:0032501 GO:0032502 GO:0032553 GO:0032555 GO:0032559 GO:0034641 GO:0035639 GO:0036094 GO:0040029 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0060255 GO:0061458 GO:0065007 GO:0071514 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:0097367 GO:1901265 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

629

Amino Acids

71.29

Weight (kDa)

5.41

Isoelectric Point (pI)

40.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_long	PF17177	291 - 435	1.5e-06	Pentacotripeptide-repeat region of PRORP
PPR_1	PF12854	348 - 376	1.1e-07	PPR repeat
PPR_2	PF13041	350 - 397	9.3e-12	PPR repeat family
PPR	PF01535	352 - 380	1.6e-07	PPR repeat
PPR_2	PF13041	383 - 432	1.2e-13	PPR repeat family
PPR_long	PF17177	401 - 532	7.4e-06	Pentacotripeptide-repeat region of PRORP

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007142)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49240
fragaria_vesca	FvH4_2g09580
malus_domestica	MD07G1288700.v1.1
prunus_persica	Prupe.2G310200_v2.0.a1
pyrus_communis	pycom01g22880
rosa_chinensis	RchiOBHm_Chr1g0380631
rosa_laevigata	RLG00000026280
rosa_multiflora	Rmu_sc0004647.1_g000010 Rmu_sc0020141.1_g000001 Rmu_sc0020141.1_g000002 Rmu_sc0021483.1_g000003 Rmu_ssc0000015.1_g000013
rosa_roxburghii	Rroxscaffold_4G00279120
rosa_rugosa	Rorug01G0122900 Rorug01G0423100
rosa_samantha	Rh1AG447400 Rh1BG113000 Rh1BG151000 Rh1BG402900 Rh1CG417300 Rh1DG182800 Rh1DG433200 Rh7CG247500
rosa_wichuraiana	Rw1G038940 Rw7G019950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	939
AarI	CACCTGC	1 cut(s)	1844
Acc36I	ACCTGC	1 cut(s)	1844
AccI	GTMKAC	1 cut(s)	1510
AccII	CGCG	1 cut(s)	110
AciI	CCGC	8 cut(s)	18, 58, 74, 126, 129, 413, 1004, 1776
AclWI	GGATC	8 cut(s)	45, 310, 698, 711, 1854, 1867, 1868, 1881
AcsI	RAATTY	5 cut(s)	745, 907, 1045, 1360, 1478
AdeI	CACNNNGTG	1 cut(s)	364
AfaI	GTAC	3 cut(s)	350, 1079, 1262
AfeI	AGCGCT	1 cut(s)	444
AflIII	ACRYGT	1 cut(s)	99
AgeI	ACCGGT	1 cut(s)	172
AjnI	CCWGG	1 cut(s)	516
Alw26I	GTCTC	2 cut(s)	268, 290
AlwI	GGATC	8 cut(s)	45, 310, 698, 711, 1854, 1867, 1868, 1881
Aor51HI	AGCGCT	1 cut(s)	444
ApeKI	GCWGC	5 cut(s)	76, 341, 418, 1319, 1733
ApoI	RAATTY	5 cut(s)	745, 907, 1045, 1360, 1478
AseI	ATTAAT	2 cut(s)	468, 1739
AsiGI	ACCGGT	1 cut(s)	172
AspLEI	GCGC	2 cut(s)	418, 445
AsuHPI	GGTGA	4 cut(s)	1018, 1142, 1238, 1456
AsuII	TTCGAA	1 cut(s)	371
BamHI	GGATCC	3 cut(s)	703, 1859, 1873
BbsI	GAAGAC	1 cut(s)	149
BbvCI	CCTCAGC	1 cut(s)	1206
BbvI	GCAGC	5 cut(s)	88, 328, 430, 1306, 1720
BccI	CCATC	8 cut(s)	724, 752, 809, 856, 1060, 1435, 1453, 1828
BceAI	ACGGC	3 cut(s)	74, 126, 363
BciT130I	CCWGG	1 cut(s)	518
BciVI	GTATCC	1 cut(s)	1276
BclI	TGATCA	1 cut(s)	1395
BcoDI	GTCTC	2 cut(s)	268, 290
BfoI	RGCGCY	1 cut(s)	446
BfuAI	ACCTGC	1 cut(s)	1844
BfuI	GTATCC	1 cut(s)	1276
BglII	AGATCT	2 cut(s)	191, 1627
Bme1390I	CCNGG	1 cut(s)	518
BmiI	GGNNCC	4 cut(s)	168, 705, 1861, 1875
BmrFI	CCNGG	1 cut(s)	518
BmsI	GCATC	6 cut(s)	742, 991, 1408, 1512, 1533, 1684
BpiI	GAAGAC	1 cut(s)	149
BpmI	CTGGAG	3 cut(s)	971, 1107, 1652
Bpu10I	CCTNAGC	1 cut(s)	1206
Bpu14I	TTCGAA	1 cut(s)	371
BpuEI	CTTGAG	3 cut(s)	671, 1439, 1511
BsaJI	CCNNGG	1 cut(s)	1028
BsaWI	WCCGGW	1 cut(s)	172
Bse118I	RCCGGY	1 cut(s)	172
Bse3DI	GCAATG	1 cut(s)	666
BseBI	CCWGG	1 cut(s)	518
BseDI	CCNNGG	1 cut(s)	1028
BseGI	GGATG	3 cut(s)	927, 1543, 1555
BseMI	GCAATG	1 cut(s)	666
BseMII	CTCAG	5 cut(s)	128, 209, 1197, 1203, 1595
BseXI	GCAGC	5 cut(s)	88, 328, 430, 1306, 1720
BseYI	CCCAGC	1 cut(s)	1403
Bsh1236I	CGCG	1 cut(s)	110
BshTI	ACCGGT	1 cut(s)	172
BsiSI	CCGG	1 cut(s)	173
BslFI	GGGAC	1 cut(s)	366
BsmAI	GTCTC	2 cut(s)	268, 290
BsmBI	CGTCTC	1 cut(s)	290
BsmFI	GGGAC	1 cut(s)	366
Bsp119I	TTCGAA	1 cut(s)	371
Bsp1407I	TGTACA	1 cut(s)	348
Bsp68I	TCGCGA	1 cut(s)	110
BspACI	CCGC	8 cut(s)	18, 58, 74, 126, 129, 413, 1004, 1776
BspCNI	CTCAG	5 cut(s)	127, 208, 1198, 1204, 1596
BspFNI	CGCG	1 cut(s)	110
BspHI	TCATGA	2 cut(s)	852, 1485
BspLI	GGNNCC	4 cut(s)	168, 705, 1861, 1875
BspMI	ACCTGC	1 cut(s)	1844
BspPI	GGATC	8 cut(s)	45, 310, 698, 711, 1854, 1867, 1868, 1881
BspT104I	TTCGAA	1 cut(s)	371
BsrDI	GCAATG	1 cut(s)	666
BsrFI	RCCGGY	1 cut(s)	172
BsrGI	TGTACA	1 cut(s)	348
BssAI	RCCGGY	1 cut(s)	172
BssECI	CCNNGG	1 cut(s)	1028
Bst2UI	CCWGG	1 cut(s)	518
Bst4CI	ACNGT	7 cut(s)	65, 397, 406, 1082, 1379, 1561, 1881
Bst6I	CTCTTC	4 cut(s)	1230, 1612, 1641, 1695
BstAUI	TGTACA	1 cut(s)	348
BstBI	TTCGAA	1 cut(s)	371
BstDEI	CTNAG	7 cut(s)	114, 195, 432, 1206, 1212, 1352, 1604
BstF5I	GGATG	3 cut(s)	927, 1543, 1555
BstFNI	CGCG	1 cut(s)	110
BstH2I	RGCGCY	1 cut(s)	446
BstHHI	GCGC	2 cut(s)	418, 445
BstMAI	GTCTC	2 cut(s)	268, 290
BstMWI	GCNNNNNNNGC	1 cut(s)	482
BstNI	CCWGG	1 cut(s)	518
BstNSI	RCATGY	1 cut(s)	103
BstSCI	CCNGG	1 cut(s)	516
BstUI	CGCG	1 cut(s)	110
BstV1I	GCAGC	5 cut(s)	88, 328, 430, 1306, 1720
BstV2I	GAAGAC	1 cut(s)	149
BstX2I	RGATCY	6 cut(s)	50, 191, 703, 1627, 1859, 1873
BstYI	RGATCY	6 cut(s)	50, 191, 703, 1627, 1859, 1873
BsuI	GTATCC	1 cut(s)	1276
BtsCI	GGATG	3 cut(s)	927, 1543, 1555
BtsI	GCAGTG	1 cut(s)	1761
BtsIMutI	CAGTG	2 cut(s)	393, 1761
BtuMI	TCGCGA	1 cut(s)	110
BveI	ACCTGC	1 cut(s)	1844
CciI	TCATGA	2 cut(s)	852, 1485
CfoI	GCGC	2 cut(s)	418, 445
Cfr10I	RCCGGY	1 cut(s)	172
CseI	GACGC	1 cut(s)	140
Csp6I	GTAC	3 cut(s)	349, 1078, 1261
CspAI	ACCGGT	1 cut(s)	172
CspCI	CAANNNNNGTGG	2 cut(s)	1737, 1772
CviAII	CATG	4 cut(s)	100, 458, 853, 1486
CviQI	GTAC	3 cut(s)	349, 1078, 1261
DdeI	CTNAG	7 cut(s)	114, 195, 432, 1206, 1212, 1352, 1604
DraI	TTTAAA	1 cut(s)	27
DraIII	CACNNNGTG	1 cut(s)	364
Eam1104I	CTCTTC	4 cut(s)	1230, 1612, 1641, 1695
EarI	CTCTTC	4 cut(s)	1230, 1612, 1641, 1695
Eco47III	AGCGCT	1 cut(s)	444
EcoRI	GAATTC	2 cut(s)	745, 907
EcoRII	CCWGG	1 cut(s)	516
Esp3I	CGTCTC	1 cut(s)	290
FaeI	CATG	4 cut(s)	103, 461, 856, 1489
FaqI	GGGAC	1 cut(s)	366
FatI	CATG	4 cut(s)	99, 457, 852, 1485
FauNDI	CATATG	1 cut(s)	1267
FbaI	TGATCA	1 cut(s)	1395
FblI	GTMKAC	1 cut(s)	1510
FokI	GGATG	3 cut(s)	934, 1550, 1562
GlaI	GCGC	2 cut(s)	417, 444
GsaI	CCCAGC	1 cut(s)	1407
GsuI	CTGGAG	3 cut(s)	971, 1107, 1652
HaeII	RGCGCY	1 cut(s)	446
HapII	CCGG	1 cut(s)	173
HgaI	GACGC	1 cut(s)	140
HhaI	GCGC	2 cut(s)	418, 445
Hin1II	CATG	4 cut(s)	103, 461, 856, 1489
Hin6I	GCGC	2 cut(s)	416, 443
HinP1I	GCGC	2 cut(s)	416, 443
HindIII	AAGCTT	3 cut(s)	770, 794, 1217
HinfI	GANTC	7 cut(s)	112, 257, 462, 592, 1177, 1343, 1512
HpaII	CCGG	1 cut(s)	173
HphI	GGTGA	4 cut(s)	1018, 1142, 1238, 1456
Hpy166II	GTNNAC	3 cut(s)	351, 1263, 1511
Hpy188I	TCNGA	4 cut(s)	95, 320, 751, 1173
Hpy8I	GTNNAC	3 cut(s)	351, 1263, 1511
Hpy99I	CGWCG	5 cut(s)	141, 147, 156, 1418, 1520
HpyAV	CCTTC	7 cut(s)	44, 606, 835, 850, 1292, 1307, 1705
HpyCH4III	ACNGT	7 cut(s)	65, 397, 406, 1082, 1379, 1561, 1881
HpyCH4IV	ACGT	2 cut(s)	136, 283
HpyCH4V	TGCA	8 cut(s)	451, 457, 485, 1384, 1421, 1582, 1697, 1736
HpyF10VI	GCNNNNNNNGC	1 cut(s)	482
HpyF3I	CTNAG	7 cut(s)	114, 195, 432, 1206, 1212, 1352, 1604
HpySE526I	ACGT	2 cut(s)	136, 283
Hsp92II	CATG	4 cut(s)	103, 461, 856, 1489
HspAI	GCGC	2 cut(s)	416, 443
Ksp22I	TGATCA	1 cut(s)	1395
LmnI	GCTCC	5 cut(s)	166, 440, 556, 589, 1316
Lsp1109I	GCAGC	5 cut(s)	88, 328, 430, 1306, 1720
LweI	GCATC	6 cut(s)	742, 991, 1408, 1512, 1533, 1684
MaeII	ACGT	2 cut(s)	136, 283
MaeIII	GTNAC	2 cut(s)	356, 1187
MfeI	CAATTG	2 cut(s)	452, 833
MflI	RGATCY	6 cut(s)	50, 191, 703, 1627, 1859, 1873
MlyI	GAGTC	3 cut(s)	106, 1352, 1506
MmeI	TCCRAC	2 cut(s)	534, 880
MspA1I	CMGCKG	2 cut(s)	131, 1183
MspI	CCGG	1 cut(s)	173
MspR9I	CCNGG	1 cut(s)	518
MunI	CAATTG	2 cut(s)	452, 833
MvaI	CCWGG	1 cut(s)	518
MvnI	CGCG	1 cut(s)	110
MwoI	GCNNNNNNNGC	1 cut(s)	482
NdeI	CATATG	1 cut(s)	1267
NlaIII	CATG	4 cut(s)	103, 461, 856, 1489
NlaIV	GGNNCC	4 cut(s)	168, 705, 1861, 1875
NmuCI	GTSAC	2 cut(s)	356, 1187
NruI	TCGCGA	1 cut(s)	110
NspI	RCATGY	1 cut(s)	103
NspV	TTCGAA	1 cut(s)	371
PagI	TCATGA	2 cut(s)	852, 1485
PaqCI	CACCTGC	1 cut(s)	1844
PciI	ACATGT	1 cut(s)	99
PcsI	WCGNNNNNNNCGW	2 cut(s)	142, 151
PfeI	GAWTC	4 cut(s)	257, 462, 592, 1177
PinAI	ACCGGT	1 cut(s)	172
PleI	GAGTC	3 cut(s)	106, 1351, 1506
PpsI	GAGTC	3 cut(s)	106, 1351, 1506
PscI	ACATGT	1 cut(s)	99
PshBI	ATTAAT	2 cut(s)	468, 1739
PsiI	TTATAA	1 cut(s)	939
Psp6I	CCWGG	1 cut(s)	516
PspFI	CCCAGC	1 cut(s)	1403
PspGI	CCWGG	1 cut(s)	516
PspN4I	GGNNCC	4 cut(s)	168, 705, 1861, 1875
PsuI	RGATCY	6 cut(s)	50, 191, 703, 1627, 1859, 1873
PvuII	CAGCTG	1 cut(s)	1183
RruI	TCGCGA	1 cut(s)	110
RsaI	GTAC	3 cut(s)	350, 1079, 1262
RsaNI	GTAC	3 cut(s)	349, 1078, 1261
SchI	GAGTC	3 cut(s)	106, 1352, 1506
ScrFI	CCNGG	1 cut(s)	518
SfaNI	GCATC	6 cut(s)	742, 991, 1408, 1512, 1533, 1684
SfuI	TTCGAA	1 cut(s)	371
SmlI	CTYRAG	3 cut(s)	650, 1454, 1526
SmoI	CTYRAG	3 cut(s)	650, 1454, 1526
SsiI	CCGC	8 cut(s)	18, 58, 74, 126, 129, 413, 1004, 1776
StyD4I	CCNGG	1 cut(s)	516
TaaI	ACNGT	7 cut(s)	65, 397, 406, 1082, 1379, 1561, 1881
TaiI	ACGT	2 cut(s)	139, 286
TaqI	TCGA	8 cut(s)	5, 220, 288, 371, 424, 1413, 1434, 1515
TatI	WGTACW	2 cut(s)	348, 1260
TauI	GCSGC	5 cut(s)	20, 76, 128, 131, 416
TfiI	GAWTC	4 cut(s)	257, 462, 592, 1177
TscAI	CASTG	2 cut(s)	400, 1761
TseFI	GTSAC	2 cut(s)	356, 1187
TseI	GCWGC	5 cut(s)	76, 341, 418, 1319, 1733
Tsp45I	GTSAC	2 cut(s)	356, 1187
TspDTI	ATGAA	9 cut(s)	171, 284, 454, 841, 854, 869, 1190, 1326, 1471
TspRI	CASTG	2 cut(s)	400, 1761
VspI	ATTAAT	2 cut(s)	468, 1739
XapI	RAATTY	5 cut(s)	745, 907, 1045, 1360, 1478
XceI	RCATGY	1 cut(s)	103
XmiI	GTMKAC	1 cut(s)	1510

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.