Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004647.1

Orthogroup ID

OG0007142

Physical Location & Seq

Genomic Coordinates Reverse (-)

36727 .. 38265

Gene Structure 1539 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004647.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1539 bp

ctgcaaatctcccaaatccatggctctctccaaaccctccttcctcacccacctcaaaaccctagccaaacccccccaccgccacctccgccgcccctcattcctctctctgcgttccctctccttcgccacccccgaagacgccgccgccgaccgacgccgccgcaagcgccgcctccgcatcgagcccccaatctcccccctccaccgctcccaacaacaacccccaaaaccctaaccctaactcccccaagctccgcgaactcgtctccgctctctccagcaaccacctcaacctccacaacaaaatcctcaccctcggacccggttgtgtatcactatctgatggaggggtgcgtgaggaattcggattcggatggggtgtttgggctttacgaggagttgaaggagaagctgggaggggaggtggaggatggggttgtgattgggagtttgatgaaggggtatttcatcaaggaaatggagaaggaggcaatggagtgttatgaacaggcttcgaaggtgaagatgaatgcggtggcgtataactcggtgttggaggcgttgtgtgggtatgggaagtttgatgaggcattgaagttgtttgataggatgagggaggagcattccccgcctaggaggttcacggtgaatttggggagctttaatgtgatggcggacgggtattgtgcgcaggggaggtttaaggaggcggttgaggtttttaggaagatgggggagtatagatgtgacccggatacgttgtcgtttaataatttgattcagcatttgtgtagcaatgggatgctgagtgaggctgaggaggtttatggggagatgggggagaagggggtgaacccggatgagtacacttactcgttgttgatggatacttgttttgaggagaataggcctgatgatgcggctgagtattttaggaaaatggtggatgagaagttgaggccgaatttggctgtttatagtaggttggctgatgggttggttaaggtggggaaggttgatgaggcgaaatcgttttttgatcttatggggaagaagctgaagatggatgttgcgagctatcagtttataatgaaggcattgagtgatgcagggaaatttgatgaggtgcttaatgtggtggatacattgttggaggacgaatggattgaattgaatgaggagttgcaggagttcatcaaaggggagctgagaaaggatgggagagaggatgaattgggaaagctgatagaggagaaggaaaggctgaaggctgaggctaaggcgaaggagattgaggaagcagaagcagcaaagagaagtagaagtgctgctgtctcctcgttacttccgtctagtttgtttgggaagaaagagacagggtctacagaggccactgaaaaagtaggtgaagctgcctcagcttctgtggaggctgctccagctgctgacacaaactcggcagagcaaccagtcaaaggtgaaagttcagatgaagaatccaaaagcgagggtgcaaacgagcaggtagtggcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000166 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006349 GO:0006725 GO:0006807 GO:0007275 GO:0008144 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009960 GO:0009987 GO:0010154 GO:0010468 GO:0016070 GO:0016787 GO:0016788 GO:0017076 GO:0019222 GO:0022414 GO:0030554 GO:0032501 GO:0032502 GO:0032553 GO:0032555 GO:0032559 GO:0034641 GO:0035639 GO:0036094 GO:0040029 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0060255 GO:0061458 GO:0065007 GO:0071514 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:0097367 GO:1901265 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

512

Amino Acids

56.55

Weight (kDa)

4.99

Isoelectric Point (pI)

50.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007142)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49240
fragaria_vesca	FvH4_2g09580
malus_domestica	MD07G1288700.v1.1
prunus_persica	Prupe.2G310200_v2.0.a1
pyrus_communis	pycom01g22880
rosa_chinensis	RchiOBHm_Chr1g0380631
rosa_laevigata	RLG00000026280
rosa_multiflora	Rmu_sc0004647.1_g000010 Rmu_sc0020141.1_g000001 Rmu_sc0020141.1_g000002 Rmu_sc0021483.1_g000003 Rmu_ssc0000015.1_g000013
rosa_roxburghii	Rroxscaffold_4G00279120
rosa_rugosa	Rorug01G0122900 Rorug01G0423100
rosa_samantha	Rh1AG447400 Rh1BG113000 Rh1BG151000 Rh1BG402900 Rh1CG417300 Rh1DG182800 Rh1DG433200 Rh7CG247500
rosa_wichuraiana	Rw1G038940 Rw7G019950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1091
Acc16I	TGCGCA	1 cut(s)	693
Acc36I	ACCTGC	1 cut(s)	1516
AccBSI	CCGCTC	2 cut(s)	211, 274
AccI	GTMKAC	1 cut(s)	1385
AccII	CGCG	1 cut(s)	260
AcsI	RAATTY	4 cut(s)	364, 652, 967, 1118
AcuI	CTGAAG	2 cut(s)	1082, 1289
AcyI	GRCGYC	2 cut(s)	142, 158
AfaI	GTAC	1 cut(s)	869
AfiI	CCNNNNNNNGG	2 cut(s)	636, 1478
AgsI	TTSAA	4 cut(s)	406, 598, 1172, 1177
AjuI	GAANNNNNNNTTGG	2 cut(s)	24, 56
Alw26I	GTCTC	3 cut(s)	273, 1342, 1370
AlwNI	CAGNNNCTG	2 cut(s)	1427, 1448
AoxI	GGCC	3 cut(s)	911, 962, 1392
ApeKI	GCWGC	5 cut(s)	1310, 1331, 1415, 1436, 1445
ApoI	RAATTY	4 cut(s)	364, 652, 967, 1118
AspA2I	CCTAGG	1 cut(s)	635
AspLEI	GCGC	2 cut(s)	172, 694
AspS9I	GGNCC	1 cut(s)	322
AsuC2I	CCSGG	3 cut(s)	326, 755, 860
AsuHPI	GGTGA	7 cut(s)	38, 306, 535, 661, 865, 1421, 1493
AsuII	TTCGAA	1 cut(s)	518
AvaII	GGWCC	1 cut(s)	322
AvrII	CCTAGG	1 cut(s)	635
BanII	GRGCYC	1 cut(s)	190
BbsI	GAAGAC	1 cut(s)	145
BbvCI	CCTCAGC	3 cut(s)	819, 1275, 1420
BbvI	GCAGC	5 cut(s)	1318, 1322, 1402, 1423, 1432
BciVI	GTATCC	3 cut(s)	751, 883, 1138
BcnI	CCSGG	3 cut(s)	326, 755, 860
BcoDI	GTCTC	3 cut(s)	273, 1342, 1370
BfaI	CTAG	3 cut(s)	63, 636, 1356
BfmI	CTRYAG	1 cut(s)	1386
BfoI	RGCGCY	1 cut(s)	173
BfuAI	ACCTGC	1 cut(s)	1516
BfuI	GTATCC	3 cut(s)	751, 883, 1138
BlnI	CCTAGG	1 cut(s)	635
Bme1390I	CCNGG	3 cut(s)	326, 755, 860
Bme18I	GGWCC	1 cut(s)	322
BmgT120I	GGNCC	1 cut(s)	322
BmiI	GGNNCC	1 cut(s)	324
BmrFI	CCNGG	3 cut(s)	326, 755, 860
BmsI	GCATC	4 cut(s)	190, 795, 910, 1099
BpiI	GAAGAC	1 cut(s)	145
BpmI	CTGGAG	2 cut(s)	264, 1425
Bpu10I	CCTNAGC	4 cut(s)	819, 1275, 1281, 1420
Bpu14I	TTCGAA	1 cut(s)	518
BpuMI	CCSGG	3 cut(s)	326, 755, 860
BsaHI	GRCGYC	2 cut(s)	142, 158
BsaJI	CCNNGG	3 cut(s)	19, 318, 635
BsaXI	ACNNNNNCTCC	6 cut(s)	229, 259, 411, 441, 551, 581
Bsc4I	CCNNNNNNNGG	2 cut(s)	636, 1478
Bse1I	ACTGG	1 cut(s)	1472
Bse3DI	GCAATG	2 cut(s)	501, 805
BseDI	CCNNGG	3 cut(s)	19, 318, 635
BseGI	GGATG	9 cut(s)	382, 439, 618, 810, 868, 955, 1075, 1225, 1237
BseLI	CCNNNNNNNGG	2 cut(s)	636, 1478
BseMI	GCAATG	2 cut(s)	501, 805
BseMII	CTCAG	6 cut(s)	800, 810, 918, 1202, 1266, 1434
BseNI	ACTGG	1 cut(s)	1472
BseRI	GAGGAG	7 cut(s)	413, 635, 836, 917, 1196, 1268, 1330
BseXI	GCAGC	5 cut(s)	1318, 1322, 1402, 1423, 1432
BseYI	CCCAGC	1 cut(s)	415
Bsh1236I	CGCG	1 cut(s)	260
Bsh1285I	CGRYCG	1 cut(s)	155
BshFI	GGCC	3 cut(s)	913, 964, 1394
BsiEI	CGRYCG	1 cut(s)	155
BsiSI	CCGG	3 cut(s)	326, 755, 860
BslI	CCNNNNNNNGG	2 cut(s)	636, 1478
BsmAI	GTCTC	3 cut(s)	273, 1342, 1370
BsmBI	CGTCTC	1 cut(s)	273
BsmI	GAATGC	2 cut(s)	538, 625
BsnI	GGCC	3 cut(s)	913, 964, 1394
Bsp119I	TTCGAA	1 cut(s)	518
Bsp1286I	GDGCHC	1 cut(s)	190
Bsp143I	GATC	1 cut(s)	1042
Bsp19I	CCATGG	1 cut(s)	19
BspANI	GGCC	3 cut(s)	913, 964, 1394
BspCNI	CTCAG	6 cut(s)	801, 811, 919, 1203, 1267, 1433
BspFNI	CGCG	1 cut(s)	260
BspLI	GGNNCC	1 cut(s)	324
BspMI	ACCTGC	1 cut(s)	1516
BspT104I	TTCGAA	1 cut(s)	518
BsrBI	CCGCTC	2 cut(s)	211, 274
BsrDI	GCAATG	2 cut(s)	501, 805
BsrI	ACTGG	1 cut(s)	1472
BssECI	CCNNGG	3 cut(s)	19, 318, 635
BssMI	GATC	1 cut(s)	1042
BssNI	GRCGYC	2 cut(s)	142, 158
BssT1I	CCWWGG	2 cut(s)	19, 635
Bst4CI	ACNGT	1 cut(s)	649
BstACI	GRCGYC	2 cut(s)	142, 158
BstBI	TTCGAA	1 cut(s)	518
BstC8I	GCNNGC	2 cut(s)	168, 1078
BstDEI	CTNAG	7 cut(s)	809, 819, 927, 1211, 1275, 1281, 1420
BstDSI	CCRYGG	1 cut(s)	19
BstF5I	GGATG	9 cut(s)	382, 439, 618, 810, 868, 955, 1075, 1225, 1237
BstFNI	CGCG	1 cut(s)	260
BstH2I	RGCGCY	1 cut(s)	173
BstHHI	GCGC	2 cut(s)	172, 694
BstKTI	GATC	1 cut(s)	1045
BstMAI	GTCTC	3 cut(s)	273, 1342, 1370
BstMBI	GATC	1 cut(s)	1042
BstMCI	CGRYCG	1 cut(s)	155
BstMWI	GCNNNNNNNGC	9 cut(s)	88, 169, 172, 178, 631, 1310, 1421, 1442, 1445
BstSCI	CCNGG	3 cut(s)	324, 753, 858
BstSFI	CTRYAG	1 cut(s)	1386
BstUI	CGCG	1 cut(s)	260
BstV1I	GCAGC	5 cut(s)	1318, 1322, 1402, 1423, 1432
BstV2I	GAAGAC	1 cut(s)	145
BstXI	CCANNNNNNTGG	1 cut(s)	20
BsuI	GTATCC	3 cut(s)	751, 883, 1138
BsuRI	GGCC	3 cut(s)	913, 964, 1394
BtgI	CCRYGG	1 cut(s)	19
BtsCI	GGATG	9 cut(s)	382, 439, 618, 810, 868, 955, 1075, 1225, 1237
BtsIMutI	CAGTG	1 cut(s)	1395
BveI	ACCTGC	1 cut(s)	1516
Cac8I	GCNNGC	2 cut(s)	168, 1078
CaiI	CAGNNNCTG	2 cut(s)	1427, 1448
CfoI	GCGC	2 cut(s)	172, 694
Cfr13I	GGNCC	1 cut(s)	322
CseI	GACGC	2 cut(s)	150, 166
Csp6I	GTAC	1 cut(s)	868
CviAII	CATG	1 cut(s)	20
CviQI	GTAC	1 cut(s)	868
DdeI	CTNAG	7 cut(s)	809, 819, 927, 1211, 1275, 1281, 1420
DpnI	GATC	1 cut(s)	1044
DpnII	GATC	1 cut(s)	1042
EciI	GGCGGA	2 cut(s)	78, 692
Eco130I	CCWWGG	2 cut(s)	19, 635
Eco147I	AGGCCT	1 cut(s)	913
Eco24I	GRGCYC	1 cut(s)	190
Eco47I	GGWCC	1 cut(s)	322
Eco57I	CTGAAG	2 cut(s)	1082, 1289
EcoRI	GAATTC	1 cut(s)	364
EcoT14I	CCWWGG	2 cut(s)	19, 635
EcoT38I	GRGCYC	1 cut(s)	190
ErhI	CCWWGG	2 cut(s)	19, 635
Esp3I	CGTCTC	1 cut(s)	273
FaeI	CATG	1 cut(s)	23
FaiI	YATR	9 cut(s)	21, 507, 546, 576, 744, 831, 981, 1049, 1091
FatI	CATG	1 cut(s)	19
FauI	CCCGC	1 cut(s)	639
FblI	GTMKAC	1 cut(s)	1385
FokI	GGATG	9 cut(s)	389, 446, 625, 817, 875, 962, 1082, 1232, 1244
FriOI	GRGCYC	1 cut(s)	190
FspBI	CTAG	3 cut(s)	63, 636, 1356
FspI	TGCGCA	1 cut(s)	693
GlaI	GCGC	2 cut(s)	171, 693
GsaI	CCCAGC	1 cut(s)	419
GsuI	CTGGAG	2 cut(s)	264, 1425
HaeII	RGCGCY	1 cut(s)	173
HaeIII	GGCC	3 cut(s)	913, 964, 1394
HapII	CCGG	3 cut(s)	326, 755, 860
HgaI	GACGC	2 cut(s)	150, 166
HhaI	GCGC	2 cut(s)	172, 694
Hin1I	GRCGYC	2 cut(s)	142, 158
Hin1II	CATG	1 cut(s)	23
Hin6I	GCGC	2 cut(s)	170, 692
HinP1I	GCGC	2 cut(s)	170, 692
HinfI	GANTC	3 cut(s)	371, 781, 1499
HpaII	CCGG	3 cut(s)	326, 755, 860
HphI	GGTGA	7 cut(s)	38, 306, 535, 661, 865, 1421, 1493
Hpy166II	GTNNAC	4 cut(s)	645, 856, 870, 1386
Hpy188I	TCNGA	5 cut(s)	322, 345, 370, 376, 1492
Hpy8I	GTNNAC	4 cut(s)	645, 856, 870, 1386
Hpy99I	CGWCG	1 cut(s)	160
HpyCH4III	ACNGT	1 cut(s)	649
HpyCH4IV	ACGT	1 cut(s)	761
HpyCH4V	TGCA	4 cut(s)	4, 1112, 1189, 1517
HpyF10VI	GCNNNNNNNGC	9 cut(s)	88, 169, 172, 178, 631, 1310, 1421, 1442, 1445
HpyF3I	CTNAG	7 cut(s)	809, 819, 927, 1211, 1275, 1281, 1420
HpySE526I	ACGT	1 cut(s)	761
Hsp92I	GRCGYC	2 cut(s)	142, 158
Hsp92II	CATG	1 cut(s)	23
HspAI	GCGC	2 cut(s)	170, 692
Kzo9I	GATC	1 cut(s)	1042
LmnI	GCTCC	6 cut(s)	216, 260, 622, 660, 1207, 1444
Lsp1109I	GCAGC	5 cut(s)	1318, 1322, 1402, 1423, 1432
LweI	GCATC	4 cut(s)	190, 795, 910, 1099
MaeI	CTAG	3 cut(s)	63, 636, 1356
MaeII	ACGT	1 cut(s)	761
MaeIII	GTNAC	2 cut(s)	749, 1344
MalI	GATC	1 cut(s)	1044
MbiI	CCGCTC	2 cut(s)	211, 274
MboI	GATC	1 cut(s)	1042
MboII	GAAGA	7 cut(s)	150, 538, 742, 1066, 1075, 1381, 1508
MhlI	GDGCHC	1 cut(s)	190
MluCI	AATT	7 cut(s)	364, 652, 775, 967, 1118, 1172, 1235
MmeI	TCCRAC	2 cut(s)	537, 1134
MseI	TTAA	5 cut(s)	666, 705, 771, 1005, 1134
MspA1I	CMGCKG	1 cut(s)	1445
MspI	CCGG	3 cut(s)	326, 755, 860
MspR9I	CCNGG	3 cut(s)	326, 755, 860
Mva1269I	GAATGC	2 cut(s)	538, 625
MvnI	CGCG	1 cut(s)	260
MwoI	GCNNNNNNNGC	9 cut(s)	88, 169, 172, 178, 631, 1310, 1421, 1442, 1445
NciI	CCSGG	3 cut(s)	326, 755, 860
NcoI	CCATGG	1 cut(s)	19
NdeII	GATC	1 cut(s)	1042
NlaIII	CATG	1 cut(s)	23
NlaIV	GGNNCC	1 cut(s)	324
NmeAIII	GCCGAG	1 cut(s)	1439
NmuCI	GTSAC	1 cut(s)	749
NsbI	TGCGCA	1 cut(s)	693
NspV	TTCGAA	1 cut(s)	518
PceI	AGGCCT	1 cut(s)	913
PcsI	WCGNNNNNNNCGW	3 cut(s)	133, 148, 1349
PctI	GAATGC	2 cut(s)	538, 625
PfeI	GAWTC	3 cut(s)	371, 781, 1499
PflFI	GACNNNGTC	1 cut(s)	1381
PsiI	TTATAA	1 cut(s)	1091
PspFI	CCCAGC	1 cut(s)	415
PspN4I	GGNNCC	1 cut(s)	324
PspPI	GGNCC	1 cut(s)	322
PstNI	CAGNNNCTG	2 cut(s)	1427, 1448
PsyI	GACNNNGTC	1 cut(s)	1381
PvuII	CAGCTG	1 cut(s)	1445
RsaI	GTAC	1 cut(s)	869
RsaNI	GTAC	1 cut(s)	868
SaqAI	TTAA	5 cut(s)	666, 705, 771, 1005, 1134
Sau3AI	GATC	1 cut(s)	1042
Sau96I	GGNCC	1 cut(s)	322
ScrFI	CCNGG	3 cut(s)	326, 755, 860
SduI	GDGCHC	1 cut(s)	190
SfaNI	GCATC	4 cut(s)	190, 795, 910, 1099
SfcI	CTRYAG	1 cut(s)	1386
SfuI	TTCGAA	1 cut(s)	518
SinI	GGWCC	1 cut(s)	322
Sse9I	AATT	7 cut(s)	364, 652, 775, 967, 1118, 1172, 1235
SseBI	AGGCCT	1 cut(s)	913
SspMI	CTAG	3 cut(s)	63, 636, 1356
StuI	AGGCCT	1 cut(s)	913
StyD4I	CCNGG	3 cut(s)	324, 753, 858
StyI	CCWWGG	2 cut(s)	19, 635
TaaI	ACNGT	1 cut(s)	649
TaiI	ACGT	1 cut(s)	764
TaqI	TCGA	2 cut(s)	184, 518
TaqII	GACCGA	1 cut(s)	169
TasI	AATT	7 cut(s)	364, 652, 775, 967, 1118, 1172, 1235
TatI	WGTACW	1 cut(s)	867
TauI	GCSGC	7 cut(s)	94, 147, 150, 163, 166, 175, 926
TfiI	GAWTC	3 cut(s)	371, 781, 1499
Tru1I	TTAA	5 cut(s)	666, 705, 771, 1005, 1134
Tru9I	TTAA	5 cut(s)	666, 705, 771, 1005, 1134
TscAI	CASTG	1 cut(s)	1402
TseFI	GTSAC	1 cut(s)	749
TseI	GCWGC	5 cut(s)	1310, 1331, 1415, 1436, 1445
Tsp45I	GTSAC	1 cut(s)	749
TspDTI	ATGAA	8 cut(s)	460, 473, 522, 545, 1109, 1186, 1248, 1509
TspGWI	ACGGA	1 cut(s)	1341
TspRI	CASTG	1 cut(s)	1402
Tth111I	GACNNNGTC	1 cut(s)	1381
VpaK11BI	GGWCC	1 cut(s)	322
XapI	RAATTY	4 cut(s)	364, 652, 967, 1118
XmaJI	CCTAGG	1 cut(s)	635
XmiI	GTMKAC	1 cut(s)	1385
XspI	CTAG	3 cut(s)	63, 636, 1356

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.