Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0020141.1

Orthogroup ID

OG0007142

Physical Location & Seq

Genomic Coordinates Reverse (-)

606 .. 1304

Gene Structure 699 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0020141.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

atgatgaggtcagaatttccctccgatctctctctctatctctctcttcgtgcaaagcaattgaatgagaaagaaggttatgaaacttcccacccaaaaatcctgattttcgagaaacttccaaagctcgacgtattgaagcccagcccaacaccccagcaaaaaagcccagcccaacaactggccatgaactcaattccatcccctcatttctcttctccattttctaaaaccctctcagaaccccttgtctgcaaatctcccaaatccatggctctctccaaaccctccttcctcacccacctcaaaaccctagccaaacccccccaccgccacctccgccgccacacacccccctcattcctctctctgcgttccctctccttcgccacccccgaagacgccgccgccgaccgccgccgccgcaagcgccgcctccgcatcgagcccccaatctcccccctccaccgctcccaacaacaacaacaacccccaaaaccccaaaaccctaactctaaccctaactcccccaagctcccggaacccgtctccgctctctccggcaaccgcctcaacctccacaacaaaatcctcaccctcatccgccgcaacgacctcgaagaagccgccctctacacccgccactccatctactccaactgccgccccacccggacccggttgtgtatcactatctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000166 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006349 GO:0006725 GO:0006807 GO:0007275 GO:0008144 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009960 GO:0009987 GO:0010154 GO:0010468 GO:0016070 GO:0016787 GO:0016788 GO:0017076 GO:0019222 GO:0022414 GO:0030554 GO:0032501 GO:0032502 GO:0032553 GO:0032555 GO:0032559 GO:0034641 GO:0035639 GO:0036094 GO:0040029 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0060255 GO:0061458 GO:0065007 GO:0071514 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:0097367 GO:1901265 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

232

Amino Acids

26.44

Weight (kDa)

10.65

Isoelectric Point (pI)

81.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007142)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49240
fragaria_vesca	FvH4_2g09580
malus_domestica	MD07G1288700.v1.1
prunus_persica	Prupe.2G310200_v2.0.a1
pyrus_communis	pycom01g22880
rosa_chinensis	RchiOBHm_Chr1g0380631
rosa_laevigata	RLG00000026280
rosa_multiflora	Rmu_sc0004647.1_g000010 Rmu_sc0020141.1_g000001 Rmu_sc0020141.1_g000002 Rmu_sc0021483.1_g000003 Rmu_ssc0000015.1_g000013
rosa_roxburghii	Rroxscaffold_4G00279120
rosa_rugosa	Rorug01G0122900 Rorug01G0423100
rosa_samantha	Rh1AG447400 Rh1BG113000 Rh1BG151000 Rh1BG402900 Rh1CG417300 Rh1DG182800 Rh1DG433200 Rh7CG247500
rosa_wichuraiana	Rw1G038940 Rw7G019950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	181
AccBSI	CCGCTC	2 cut(s)	471, 554
AcoI	YGGCCR	1 cut(s)	183
AcsI	RAATTY	1 cut(s)	14
AcyI	GRCGYC	1 cut(s)	402
AfiI	CCNNNNNNNGG	2 cut(s)	181, 678
AgsI	TTSAA	2 cut(s)	64, 139
AjuI	GAANNNNNNNTTGG	2 cut(s)	275, 307
AluBI	AGCT	2 cut(s)	127, 535
AluI	AGCT	2 cut(s)	127, 535
Alw26I	GTCTC	1 cut(s)	553
AoxI	GGCC	1 cut(s)	183
ApoI	RAATTY	1 cut(s)	14
AspLEI	GCGC	1 cut(s)	432
AspS9I	GGNCC	1 cut(s)	675
AsuC2I	CCSGG	3 cut(s)	539, 673, 679
AsuHPI	GGTGA	2 cut(s)	289, 586
AvaII	GGWCC	1 cut(s)	675
BalI	TGGCCA	1 cut(s)	185
BanII	GRGCYC	1 cut(s)	450
BbsI	GAAGAC	1 cut(s)	405
BccI	CCATC	2 cut(s)	208, 656
BcgI	CGANNNNNNTGC	2 cut(s)	598, 632
BcnI	CCSGG	3 cut(s)	539, 673, 679
BcoDI	GTCTC	1 cut(s)	553
BfaI	CTAG	1 cut(s)	314
BfoI	RGCGCY	1 cut(s)	433
Bme1390I	CCNGG	3 cut(s)	539, 673, 679
Bme18I	GGWCC	1 cut(s)	675
BmgT120I	GGNCC	1 cut(s)	675
BmiI	GGNNCC	2 cut(s)	543, 677
BmrFI	CCNGG	3 cut(s)	539, 673, 679
BmsI	GCATC	1 cut(s)	450
BpiI	GAAGAC	1 cut(s)	405
BpuMI	CCSGG	3 cut(s)	539, 673, 679
BsaHI	GRCGYC	1 cut(s)	402
BsaJI	CCNNGG	1 cut(s)	270
BsaXI	ACNNNNNCTCC	2 cut(s)	509, 539
Bsc4I	CCNNNNNNNGG	2 cut(s)	181, 678
Bse1I	ACTGG	1 cut(s)	186
BseDI	CCNNGG	1 cut(s)	270
BseGI	GGATG	2 cut(s)	200, 600
BseLI	CCNNNNNNNGG	2 cut(s)	181, 678
BseMII	CTCAG	1 cut(s)	252
BseNI	ACTGG	1 cut(s)	186
BseYI	CCCAGC	3 cut(s)	143, 156, 169
Bsh1285I	CGRYCG	1 cut(s)	415
BshFI	GGCC	1 cut(s)	185
BsiEI	CGRYCG	1 cut(s)	415
BsiSI	CCGG	4 cut(s)	539, 561, 673, 679
BslI	CCNNNNNNNGG	2 cut(s)	181, 678
BsmAI	GTCTC	1 cut(s)	553
BsmBI	CGTCTC	1 cut(s)	553
BsnI	GGCC	1 cut(s)	185
Bsp1286I	GDGCHC	1 cut(s)	450
Bsp143I	GATC	1 cut(s)	25
Bsp19I	CCATGG	1 cut(s)	270
BspANI	GGCC	1 cut(s)	185
BspCNI	CTCAG	1 cut(s)	251
BspLI	GGNNCC	2 cut(s)	543, 677
BsrBI	CCGCTC	2 cut(s)	471, 554
BsrI	ACTGG	1 cut(s)	186
BssECI	CCNNGG	1 cut(s)	270
BssMI	GATC	1 cut(s)	25
BssNI	GRCGYC	1 cut(s)	402
BssT1I	CCWWGG	1 cut(s)	270
Bst6I	CTCTTC	2 cut(s)	51, 220
BstACI	GRCGYC	1 cut(s)	402
BstC8I	GCNNGC	1 cut(s)	428
BstDEI	CTNAG	1 cut(s)	238
BstDSI	CCRYGG	1 cut(s)	270
BstF5I	GGATG	2 cut(s)	200, 600
BstH2I	RGCGCY	1 cut(s)	433
BstHHI	GCGC	1 cut(s)	432
BstKTI	GATC	1 cut(s)	28
BstMAI	GTCTC	1 cut(s)	553
BstMBI	GATC	1 cut(s)	25
BstMCI	CGRYCG	1 cut(s)	415
BstMWI	GCNNNNNNNGC	5 cut(s)	339, 423, 429, 432, 438
BstSCI	CCNGG	3 cut(s)	537, 671, 677
BstV2I	GAAGAC	1 cut(s)	405
BstXI	CCANNNNNNTGG	1 cut(s)	271
BsuRI	GGCC	1 cut(s)	185
BtgI	CCRYGG	1 cut(s)	270
BtsCI	GGATG	2 cut(s)	200, 600
Cac8I	GCNNGC	1 cut(s)	428
CfoI	GCGC	1 cut(s)	432
Cfr13I	GGNCC	1 cut(s)	675
CseI	GACGC	1 cut(s)	410
CviAII	CATG	2 cut(s)	187, 271
DdeI	CTNAG	1 cut(s)	238
DpnI	GATC	1 cut(s)	27
DpnII	GATC	1 cut(s)	25
EaeI	YGGCCR	1 cut(s)	183
Eam1104I	CTCTTC	2 cut(s)	51, 220
EarI	CTCTTC	2 cut(s)	51, 220
EciI	GGCGGA	2 cut(s)	329, 593
Eco130I	CCWWGG	1 cut(s)	270
Eco24I	GRGCYC	1 cut(s)	450
Eco47I	GGWCC	1 cut(s)	675
EcoT14I	CCWWGG	1 cut(s)	270
EcoT38I	GRGCYC	1 cut(s)	450
ErhI	CCWWGG	1 cut(s)	270
Esp3I	CGTCTC	1 cut(s)	553
FaeI	CATG	2 cut(s)	190, 274
FaiI	YATR	3 cut(s)	81, 188, 272
FatI	CATG	2 cut(s)	186, 270
FauI	CCCGC	1 cut(s)	647
FokI	GGATG	2 cut(s)	187, 587
FriOI	GRGCYC	1 cut(s)	450
FspBI	CTAG	1 cut(s)	314
GlaI	GCGC	1 cut(s)	431
GsaI	CCCAGC	3 cut(s)	147, 160, 173
HaeII	RGCGCY	1 cut(s)	433
HaeIII	GGCC	1 cut(s)	185
HapII	CCGG	4 cut(s)	539, 561, 673, 679
HgaI	GACGC	1 cut(s)	410
HhaI	GCGC	1 cut(s)	432
Hin1I	GRCGYC	1 cut(s)	402
Hin1II	CATG	2 cut(s)	190, 274
Hin6I	GCGC	1 cut(s)	430
HinP1I	GCGC	1 cut(s)	430
HpaII	CCGG	4 cut(s)	539, 561, 673, 679
HphI	GGTGA	2 cut(s)	289, 586
Hpy188I	TCNGA	4 cut(s)	13, 25, 241, 698
Hpy188III	TCNNGA	2 cut(s)	103, 112
Hpy99I	CGWCG	1 cut(s)	134
HpyAV	CCTTC	3 cut(s)	68, 301, 394
HpyCH4IV	ACGT	1 cut(s)	132
HpyCH4V	TGCA	2 cut(s)	53, 255
HpyF10VI	GCNNNNNNNGC	5 cut(s)	339, 423, 429, 432, 438
HpyF3I	CTNAG	1 cut(s)	238
HpySE526I	ACGT	1 cut(s)	132
Hsp92I	GRCGYC	1 cut(s)	402
Hsp92II	CATG	2 cut(s)	190, 274
HspAI	GCGC	1 cut(s)	430
Kzo9I	GATC	1 cut(s)	25
LmnI	GCTCC	2 cut(s)	476, 540
LpnPI	CCDG	9 cut(s)	116, 157, 167, 170, 183, 552, 574, 686, 692
LweI	GCATC	1 cut(s)	450
MaeI	CTAG	1 cut(s)	314
MaeII	ACGT	1 cut(s)	132
MalI	GATC	1 cut(s)	27
MbiI	CCGCTC	2 cut(s)	471, 554
MboI	GATC	1 cut(s)	25
MboII	GAAGA	4 cut(s)	38, 207, 410, 632
MfeI	CAATTG	1 cut(s)	59
MhlI	GDGCHC	1 cut(s)	450
MlsI	TGGCCA	1 cut(s)	185
MluCI	AATT	3 cut(s)	14, 59, 195
MluNI	TGGCCA	1 cut(s)	185
MmeI	TCCRAC	1 cut(s)	681
Mox20I	TGGCCA	1 cut(s)	185
MscI	TGGCCA	1 cut(s)	185
Msp20I	TGGCCA	1 cut(s)	185
MspI	CCGG	4 cut(s)	539, 561, 673, 679
MspR9I	CCNGG	3 cut(s)	539, 673, 679
MunI	CAATTG	1 cut(s)	59
MwoI	GCNNNNNNNGC	5 cut(s)	339, 423, 429, 432, 438
NciI	CCSGG	3 cut(s)	539, 673, 679
NcoI	CCATGG	1 cut(s)	270
NdeII	GATC	1 cut(s)	25
NlaIII	CATG	2 cut(s)	190, 274
NlaIV	GGNNCC	2 cut(s)	543, 677
PcsI	WCGNNNNNNNCGW	2 cut(s)	393, 408
PflMI	CCANNNNNTGG	1 cut(s)	181
PfoI	TCCNGGA	1 cut(s)	537
PspFI	CCCAGC	3 cut(s)	143, 156, 169
PspN4I	GGNNCC	2 cut(s)	543, 677
PspPI	GGNCC	1 cut(s)	675
Sau3AI	GATC	1 cut(s)	25
Sau96I	GGNCC	1 cut(s)	675
ScrFI	CCNGG	3 cut(s)	539, 673, 679
SduI	GDGCHC	1 cut(s)	450
SetI	ASST	9 cut(s)	11, 79, 129, 135, 306, 339, 537, 579, 618
SfaNI	GCATC	1 cut(s)	450
SinI	GGWCC	1 cut(s)	675
Sse9I	AATT	3 cut(s)	14, 59, 195
SspMI	CTAG	1 cut(s)	314
StyD4I	CCNGG	3 cut(s)	537, 671, 677
StyI	CCWWGG	1 cut(s)	270
TaiI	ACGT	1 cut(s)	135
TaqI	TCGA	4 cut(s)	111, 129, 444, 618
TasI	AATT	3 cut(s)	14, 59, 195
TspDTI	ATGAA	2 cut(s)	96, 203
Van91I	CCANNNNNTGG	1 cut(s)	181
VpaK11BI	GGWCC	1 cut(s)	675
XapI	RAATTY	1 cut(s)	14
XspI	CTAG	1 cut(s)	314

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.