Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0007142

Physical Location & Seq

Genomic Coordinates Forward (+)

23262863 .. 23264475

Gene Structure 1613 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG247500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 825 bp

ATGGAGAAGGAGGCAATGGAGTGTTATGAACAGGCTTCGAAGGTGAAGATGAATGCGGTGGCGTATAACTCGGTGTTGGAGGCTTTGTGTGGGTATGGGAAGTTTGATGAGGCGTTGAAGTTGTTTGATAGGATGAGGGAGGAGCATTTCCCGCCGATGAGGTTTACGGTGAATTTGGGGAGCTTTAATGTGATGGCGGACGGGTATTGTGCGCAGGGGAGGTTTAAGGAGGCGGTTGAGGTTTTTAGGAAGATGGGGGAGTATAGATGTGACCCGGATACGTTGTCGTTTAATAATTTGATTCAGCATTTGTGTAGCAATGGGATGCTGAGTGAGGCTGAGGAGGTTTATGGGGAGATGGGGGCGAAGGGGGTGAACCCGGATGAGTATACTTACTCTTTGTTGATGGATACTTGTTTTGAGGAGAATAGGCCTGATGATGCGGCTGAGTATTTTAGGAAAATGGTGGATGAGAAGTTGAGGCCGAATTTGGCTGTTTATAGTAGGTTGGCTGATGGGTTGGTTAAGGTGGGGAAGGTTGATGAGGCGAAATCGTTTTTTGATCTTATGGGGAAGAAGCTGAAGATGGATGTTGCGAGCTATCAGTTTATAATGAAGGCATTGAGTGATGCAGGGAAATTTGATGAGAAAGAGACAGGGTCTACAGAGGCCACTGAAAAAGTAGGTGAAGCTGCCTCAGCTTCTGCTCCAGCTGCTGACACAAACTCGGCAGAGCAACCAGTCAAAGGTGAAAGTTCAGATGAAGAATCCAAAAGCAAGGGTGCAAACGAGCAGCTTGATTTCTCTCATTCCTCCACTAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000166 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006349 GO:0006725 GO:0006807 GO:0007275 GO:0008144 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009960 GO:0009987 GO:0010154 GO:0010468 GO:0016070 GO:0016787 GO:0016788 GO:0017076 GO:0019222 GO:0022414 GO:0030554 GO:0032501 GO:0032502 GO:0032553 GO:0032555 GO:0032559 GO:0034641 GO:0035639 GO:0036094 GO:0040029 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0060255 GO:0061458 GO:0065007 GO:0071514 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:0097367 GO:1901265 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

274

Amino Acids

30.53

Weight (kDa)

4.77

Isoelectric Point (pI)

18.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_long	PF17177	4 - 141	1.6e-06	Pentacotripeptide-repeat region of PRORP
PPR_1	PF12854	15 - 46	1.2e-06	PPR repeat
PPR_2	PF13041	18 - 57	1.3e-08	PPR repeat family
PPR	PF01535	20 - 48	3.9e-07	PPR repeat
PPR_2	PF13041	60 - 98	9.8e-08	PPR repeat family
PPR	PF01535	61 - 90	7e-07	PPR repeat
PPR_1	PF12854	90 - 120	5.6e-07	PPR repeat
PPR_2	PF13041	92 - 139	4.3e-15	PPR repeat family
PPR	PF01535	96 - 125	3.1e-06	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007142)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49240
fragaria_vesca	FvH4_2g09580
malus_domestica	MD07G1288700.v1.1
prunus_persica	Prupe.2G310200_v2.0.a1
pyrus_communis	pycom01g22880
rosa_chinensis	RchiOBHm_Chr1g0380631
rosa_laevigata	RLG00000026280
rosa_multiflora	Rmu_sc0004647.1_g000010 Rmu_sc0020141.1_g000001 Rmu_sc0020141.1_g000002 Rmu_sc0021483.1_g000003 Rmu_ssc0000015.1_g000013
rosa_roxburghii	Rroxscaffold_4G00279120
rosa_rugosa	Rorug01G0122900 Rorug01G0423100
rosa_samantha	Rh1AG447400 Rh1BG113000 Rh1BG151000 Rh1BG402900 Rh1CG417300 Rh1DG182800 Rh1DG433200 Rh7CG247500
rosa_wichuraiana	Rw1G038940 Rw7G019950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	611
Acc16I	TGCGCA	1 cut(s)	213
AccI	GTMKAC	2 cut(s)	389, 662
AciI	CCGC	5 cut(s)	56, 152, 197, 233, 443
AcsI	RAATTY	3 cut(s)	172, 487, 638
AcuI	CTGAAG	1 cut(s)	602
AfiI	CCNNNNNNNGG	1 cut(s)	746
AgsI	TTSAA	1 cut(s)	118
AluBI	AGCT	7 cut(s)	183, 580, 600, 692, 701, 713, 796
AluI	AGCT	7 cut(s)	183, 580, 600, 692, 701, 713, 796
Alw26I	GTCTC	1 cut(s)	647
AlwNI	CAGNNNCTG	2 cut(s)	704, 716
AoxI	GGCC	3 cut(s)	431, 482, 669
ApeKI	GCWGC	3 cut(s)	692, 713, 793
ApoI	RAATTY	3 cut(s)	172, 487, 638
AspLEI	GCGC	1 cut(s)	214
AsuC2I	CCSGG	2 cut(s)	275, 380
AsuHPI	GGTGA	5 cut(s)	55, 181, 385, 698, 761
AsuII	TTCGAA	1 cut(s)	38
BbvCI	CCTCAGC	2 cut(s)	339, 697
BbvI	GCAGC	3 cut(s)	679, 700, 805
BccI	CCATC	6 cut(s)	187, 247, 352, 400, 509, 580
BciVI	GTATCC	2 cut(s)	271, 403
BcnI	CCSGG	2 cut(s)	275, 380
BcoDI	GTCTC	1 cut(s)	647
BfmI	CTRYAG	1 cut(s)	663
BfuI	GTATCC	2 cut(s)	271, 403
BisI	GCNGC	4 cut(s)	444, 693, 714, 794
BlsI	GCNGC	4 cut(s)	445, 694, 715, 795
Bme1390I	CCNGG	2 cut(s)	275, 380
BmrFI	CCNGG	2 cut(s)	275, 380
BmsI	GCATC	3 cut(s)	315, 430, 619
BpmI	CTGGAG	1 cut(s)	693
Bpu10I	CCTNAGC	2 cut(s)	339, 697
Bpu14I	TTCGAA	1 cut(s)	38
BpuMI	CCSGG	2 cut(s)	275, 380
BsaXI	ACNNNNNCTCC	2 cut(s)	71, 101
Bsc4I	CCNNNNNNNGG	1 cut(s)	746
Bse1I	ACTGG	1 cut(s)	740
Bse3DI	GCAATG	2 cut(s)	21, 325
BseGI	GGATG	5 cut(s)	138, 330, 388, 475, 595
BseLI	CCNNNNNNNGG	1 cut(s)	746
BseMI	GCAATG	2 cut(s)	21, 325
BseMII	CTCAG	4 cut(s)	320, 330, 438, 711
BseNI	ACTGG	1 cut(s)	740
BseRI	GAGGAG	3 cut(s)	155, 356, 437
BseXI	GCAGC	3 cut(s)	679, 700, 805
BshFI	GGCC	3 cut(s)	433, 484, 671
BsiSI	CCGG	2 cut(s)	275, 380
BslI	CCNNNNNNNGG	1 cut(s)	746
BsmAI	GTCTC	1 cut(s)	647
BsmI	GAATGC	1 cut(s)	58
BsnI	GGCC	3 cut(s)	433, 484, 671
Bsp119I	TTCGAA	1 cut(s)	38
Bsp143I	GATC	1 cut(s)	562
BspACI	CCGC	5 cut(s)	56, 152, 197, 233, 443
BspANI	GGCC	3 cut(s)	433, 484, 671
BspCNI	CTCAG	4 cut(s)	321, 331, 439, 710
BspT104I	TTCGAA	1 cut(s)	38
BsrDI	GCAATG	2 cut(s)	21, 325
BsrI	ACTGG	1 cut(s)	740
BssMI	GATC	1 cut(s)	562
BssNAI	GTATAC	1 cut(s)	390
Bst1107I	GTATAC	1 cut(s)	390
Bst4CI	ACNGT	1 cut(s)	169
BstBI	TTCGAA	1 cut(s)	38
BstC8I	GCNNGC	1 cut(s)	598
BstDEI	CTNAG	4 cut(s)	329, 339, 447, 697
BstF5I	GGATG	5 cut(s)	138, 330, 388, 475, 595
BstHHI	GCGC	1 cut(s)	214
BstKTI	GATC	1 cut(s)	565
BstMAI	GTCTC	1 cut(s)	647
BstMBI	GATC	1 cut(s)	562
BstMWI	GCNNNNNNNGC	3 cut(s)	151, 698, 713
BstSCI	CCNGG	2 cut(s)	273, 378
BstSFI	CTRYAG	1 cut(s)	663
BstV1I	GCAGC	3 cut(s)	679, 700, 805
BstZ17I	GTATAC	1 cut(s)	390
BsuI	GTATCC	2 cut(s)	271, 403
BsuRI	GGCC	3 cut(s)	433, 484, 671
BtsCI	GGATG	5 cut(s)	138, 330, 388, 475, 595
BtsIMutI	CAGTG	1 cut(s)	672
Cac8I	GCNNGC	1 cut(s)	598
CaiI	CAGNNNCTG	2 cut(s)	704, 716
CfoI	GCGC	1 cut(s)	214
DdeI	CTNAG	4 cut(s)	329, 339, 447, 697
DpnI	GATC	1 cut(s)	564
DpnII	GATC	1 cut(s)	562
EciI	GGCGGA	1 cut(s)	212
Eco147I	AGGCCT	1 cut(s)	433
Eco57I	CTGAAG	1 cut(s)	602
FaiI	YATR	9 cut(s)	27, 66, 96, 264, 351, 390, 501, 569, 611
FauI	CCCGC	1 cut(s)	159
FblI	GTMKAC	2 cut(s)	389, 662
Fnu4HI	GCNGC	4 cut(s)	444, 693, 714, 794
FokI	GGATG	5 cut(s)	145, 337, 395, 482, 602
Fsp4HI	GCNGC	4 cut(s)	444, 693, 714, 794
FspI	TGCGCA	1 cut(s)	213
GlaI	GCGC	1 cut(s)	213
GluI	GCNGC	4 cut(s)	444, 693, 714, 794
GsuI	CTGGAG	1 cut(s)	693
HaeIII	GGCC	3 cut(s)	433, 484, 671
HapII	CCGG	2 cut(s)	275, 380
HhaI	GCGC	1 cut(s)	214
Hin6I	GCGC	1 cut(s)	212
HinP1I	GCGC	1 cut(s)	212
HinfI	GANTC	2 cut(s)	301, 767
HpaII	CCGG	2 cut(s)	275, 380
HphI	GGTGA	5 cut(s)	55, 181, 385, 698, 761
Hpy166II	GTNNAC	4 cut(s)	165, 376, 390, 663
Hpy188I	TCNGA	1 cut(s)	760
Hpy8I	GTNNAC	4 cut(s)	165, 376, 390, 663
HpyAV	CCTTC	4 cut(s)	34, 361, 529, 610
HpyCH4III	ACNGT	1 cut(s)	169
HpyCH4IV	ACGT	1 cut(s)	281
HpyCH4V	TGCA	2 cut(s)	632, 785
HpyF10VI	GCNNNNNNNGC	3 cut(s)	151, 698, 713
HpyF3I	CTNAG	4 cut(s)	329, 339, 447, 697
HpySE526I	ACGT	1 cut(s)	281
HspAI	GCGC	1 cut(s)	212
Kzo9I	GATC	1 cut(s)	562
LmnI	GCTCC	3 cut(s)	142, 180, 712
LpnPI	CCDG	9 cut(s)	17, 200, 288, 393, 447, 618, 642, 723, 753
Lsp1109I	GCAGC	3 cut(s)	679, 700, 805
LweI	GCATC	3 cut(s)	315, 430, 619
MaeII	ACGT	1 cut(s)	281
MaeIII	GTNAC	1 cut(s)	269
MalI	GATC	1 cut(s)	564
MboI	GATC	1 cut(s)	562
MboII	GAAGA	5 cut(s)	58, 262, 586, 595, 776
MluCI	AATT	4 cut(s)	172, 295, 487, 638
MmeI	TCCRAC	1 cut(s)	57
MseI	TTAA	4 cut(s)	186, 225, 291, 525
MspA1I	CMGCKG	1 cut(s)	713
MspI	CCGG	2 cut(s)	275, 380
MspR9I	CCNGG	2 cut(s)	275, 380
Mva1269I	GAATGC	1 cut(s)	58
MwoI	GCNNNNNNNGC	3 cut(s)	151, 698, 713
NciI	CCSGG	2 cut(s)	275, 380
NdeII	GATC	1 cut(s)	562
NmeAIII	GCCGAG	1 cut(s)	707
NmuCI	GTSAC	1 cut(s)	269
NsbI	TGCGCA	1 cut(s)	213
NspV	TTCGAA	1 cut(s)	38
PceI	AGGCCT	1 cut(s)	433
PctI	GAATGC	1 cut(s)	58
PfeI	GAWTC	2 cut(s)	301, 767
PflFI	GACNNNGTC	1 cut(s)	658
PkrI	GCNGC	4 cut(s)	445, 694, 715, 795
PsiI	TTATAA	1 cut(s)	611
PstNI	CAGNNNCTG	2 cut(s)	704, 716
PsyI	GACNNNGTC	1 cut(s)	658
PvuII	CAGCTG	1 cut(s)	713
SaqAI	TTAA	4 cut(s)	186, 225, 291, 525
SatI	GCNGC	4 cut(s)	444, 693, 714, 794
Sau3AI	GATC	1 cut(s)	562
ScrFI	CCNGG	2 cut(s)	275, 380
SfaNI	GCATC	3 cut(s)	315, 430, 619
SfcI	CTRYAG	1 cut(s)	663
SfuI	TTCGAA	1 cut(s)	38
Sse9I	AATT	4 cut(s)	172, 295, 487, 638
SseBI	AGGCCT	1 cut(s)	433
SsiI	CCGC	5 cut(s)	56, 152, 197, 233, 443
StuI	AGGCCT	1 cut(s)	433
StyD4I	CCNGG	2 cut(s)	273, 378
TaaI	ACNGT	1 cut(s)	169
TaiI	ACGT	1 cut(s)	284
TaqI	TCGA	1 cut(s)	38
TasI	AATT	4 cut(s)	172, 295, 487, 638
TauI	GCSGC	1 cut(s)	446
TfiI	GAWTC	2 cut(s)	301, 767
Tru1I	TTAA	4 cut(s)	186, 225, 291, 525
Tru9I	TTAA	4 cut(s)	186, 225, 291, 525
TscAI	CASTG	1 cut(s)	679
TseFI	GTSAC	1 cut(s)	269
TseI	GCWGC	3 cut(s)	692, 713, 793
Tsp45I	GTSAC	1 cut(s)	269
TspDTI	ATGAA	4 cut(s)	42, 65, 629, 777
TspRI	CASTG	1 cut(s)	679
Tth111I	GACNNNGTC	1 cut(s)	658
XapI	RAATTY	3 cut(s)	172, 487, 638
XmiI	GTMKAC	2 cut(s)	389, 662

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.