Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000015.1

Orthogroup ID

OG0007142

Physical Location & Seq

Genomic Coordinates Reverse (-)

70013 .. 71383

Gene Structure 1371 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000015.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1371 bp

atggagcattacaagcagctcatcaacgacgcgccgtttaatccttctccgacgacctaccggattctgatcaaggggttggtggacaatggcaagctggagagggccatggagctcaaggaggagatggttgatgtcaagggtttcgagccggacccggttgtgtatcactatctgatgttggggtgtgtgaggaattcggattcggatggggtgtttcggctttacgaggagttgaaggagaagctgggaggggaggtggaggatggggttgtggttgggagtttgatgaaggggtatttcatcaaggaaatggagaaggaggcaatggagtgttatgaacaggcttcgaaggtgaagatgaatgcggtggcgtataactcggtgttggaggcgttgtgtgggtatgggaagtttgatgaggcattgaagttgtttgataggatgagggaggagcattccccgcctaggaggttcacggtgaatttggggagctttaatgtgatggcggacgggtattgtgcgcaggggaggtttaaggaggcggttgaggtttttaggaagatgggggagtatagatgtgacccggatacgttgtcgtttaataatttgattcagcatttgtgtagccatgggatgctgagtgaggctgaggaggtttatggggagatgggggagaagggagtgaacccggatgaatatacttactcgttgttgatggatacttgttttgaggagaataggcctgatgatgcggctgagtattttaggaaaatggtggatgagaagttgaggccgaatttggctgtttatagtaggttggctgatgggttggttaaggtggggaaggttgatgaggcgaaatcgttttttgatcttatggggaagaagctgaagatggatgttgcgagctatcagtttataatgaaggcattgagtgatgcagggaaatttgatgaggtgcttaatgtggtggatacattgttggaggacgaatggattgaattgaatgaggagttgcaggagttcatcaaaggggagctgagaaaggatgggagagaggatgaattgggaaagctgatagaggagaaggaaaggctgaaggctgaggctaaggcgaaggagattgaggaagcagaagcagcaaagagaagtagaagtgctgctgtctcctcgttacttccgtctagtttgtttgggaagaaagagacagggtctacagaggccactgaaaaagtaggtgaagctgcctcagcttctgtggaggctgctccagctgctgacacaaactcggcagagcaaccagtcaaaggtgaaagttcagatgaagaatccaaaagcgagggtgcaaacgagcaggtagtggcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000166 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006349 GO:0006725 GO:0006807 GO:0007275 GO:0008144 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009960 GO:0009987 GO:0010154 GO:0010468 GO:0016070 GO:0016787 GO:0016788 GO:0017076 GO:0019222 GO:0022414 GO:0030554 GO:0032501 GO:0032502 GO:0032553 GO:0032555 GO:0032559 GO:0034641 GO:0035639 GO:0036094 GO:0040029 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0060255 GO:0061458 GO:0065007 GO:0071514 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:0097367 GO:1901265 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

456

Amino Acids

51.15

Weight (kDa)

4.72

Isoelectric Point (pI)

32.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007142)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49240
fragaria_vesca	FvH4_2g09580
malus_domestica	MD07G1288700.v1.1
prunus_persica	Prupe.2G310200_v2.0.a1
pyrus_communis	pycom01g22880
rosa_chinensis	RchiOBHm_Chr1g0380631
rosa_laevigata	RLG00000026280
rosa_multiflora	Rmu_sc0004647.1_g000010 Rmu_sc0020141.1_g000001 Rmu_sc0020141.1_g000002 Rmu_sc0021483.1_g000003 Rmu_ssc0000015.1_g000013
rosa_roxburghii	Rroxscaffold_4G00279120
rosa_rugosa	Rorug01G0122900 Rorug01G0423100
rosa_samantha	Rh1AG447400 Rh1BG113000 Rh1BG151000 Rh1BG402900 Rh1CG417300 Rh1DG182800 Rh1DG433200 Rh7CG247500
rosa_wichuraiana	Rw1G038940 Rw7G019950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	923
Acc16I	TGCGCA	1 cut(s)	525
Acc36I	ACCTGC	1 cut(s)	1348
AccI	GTMKAC	1 cut(s)	1217
AccII	CGCG	1 cut(s)	32
AciI	CCGC	5 cut(s)	368, 464, 509, 545, 755
AcsI	RAATTY	4 cut(s)	196, 484, 799, 950
AcuI	CTGAAG	2 cut(s)	914, 1121
AfiI	CCNNNNNNNGG	2 cut(s)	468, 1310
AgsI	TTSAA	4 cut(s)	238, 430, 1004, 1009
Alw21I	GWGCWC	1 cut(s)	117
Alw26I	GTCTC	2 cut(s)	1174, 1202
AlwNI	CAGNNNCTG	2 cut(s)	1259, 1280
AoxI	GGCC	4 cut(s)	105, 743, 794, 1224
ApeKI	GCWGC	6 cut(s)	16, 1142, 1163, 1247, 1268, 1277
ApoI	RAATTY	4 cut(s)	196, 484, 799, 950
AspA2I	CCTAGG	1 cut(s)	467
AspLEI	GCGC	2 cut(s)	34, 526
AspS9I	GGNCC	2 cut(s)	105, 154
AsuC2I	CCSGG	3 cut(s)	158, 587, 692
AsuHPI	GGTGA	4 cut(s)	367, 493, 1253, 1325
AsuII	TTCGAA	1 cut(s)	350
AvaII	GGWCC	1 cut(s)	154
AvrII	CCTAGG	1 cut(s)	467
BanII	GRGCYC	1 cut(s)	117
Bbv12I	GWGCWC	1 cut(s)	117
BbvCI	CCTCAGC	3 cut(s)	651, 1107, 1252
BbvI	GCAGC	6 cut(s)	28, 1150, 1154, 1234, 1255, 1264
BceAI	ACGGC	1 cut(s)	19
BciVI	GTATCC	3 cut(s)	583, 715, 970
BclI	TGATCA	1 cut(s)	69
BcnI	CCSGG	3 cut(s)	158, 587, 692
BcoDI	GTCTC	2 cut(s)	1174, 1202
BfaI	CTAG	2 cut(s)	468, 1188
BfmI	CTRYAG	1 cut(s)	1218
BfuAI	ACCTGC	1 cut(s)	1348
BfuI	GTATCC	3 cut(s)	583, 715, 970
BisI	GCNGC	7 cut(s)	17, 756, 1143, 1164, 1248, 1269, 1278
BlnI	CCTAGG	1 cut(s)	467
BlsI	GCNGC	7 cut(s)	18, 757, 1144, 1165, 1249, 1270, 1279
Bme1390I	CCNGG	3 cut(s)	158, 587, 692
Bme18I	GGWCC	1 cut(s)	154
BmgT120I	GGNCC	2 cut(s)	105, 154
BmiI	GGNNCC	1 cut(s)	156
BmrFI	CCNGG	3 cut(s)	158, 587, 692
BmsI	GCATC	3 cut(s)	627, 742, 931
BpmI	CTGGAG	2 cut(s)	119, 1257
Bpu10I	CCTNAGC	4 cut(s)	651, 1107, 1113, 1252
Bpu14I	TTCGAA	1 cut(s)	350
BpuEI	CTTGAG	1 cut(s)	101
BpuMI	CCSGG	3 cut(s)	158, 587, 692
BsaBI	GATNNNNATC	1 cut(s)	68
BsaJI	CCNNGG	3 cut(s)	108, 467, 631
BsaWI	WCCGGW	1 cut(s)	60
BsaXI	ACNNNNNCTCC	4 cut(s)	243, 273, 383, 413
Bsc4I	CCNNNNNNNGG	2 cut(s)	468, 1310
Bse1I	ACTGG	1 cut(s)	1304
Bse3DI	GCAATG	1 cut(s)	333
Bse8I	GATNNNNATC	1 cut(s)	68
BseDI	CCNNGG	3 cut(s)	108, 467, 631
BseGI	GGATG	9 cut(s)	214, 271, 450, 642, 700, 787, 907, 1057, 1069
BseJI	GATNNNNATC	1 cut(s)	68
BseLI	CCNNNNNNNGG	2 cut(s)	468, 1310
BseMI	GCAATG	1 cut(s)	333
BseMII	CTCAG	6 cut(s)	632, 642, 750, 1034, 1098, 1266
BseNI	ACTGG	1 cut(s)	1304
BseRI	GAGGAG	8 cut(s)	137, 245, 467, 668, 749, 1028, 1100, 1162
BseXI	GCAGC	6 cut(s)	28, 1150, 1154, 1234, 1255, 1264
BseYI	CCCAGC	1 cut(s)	247
Bsh1236I	CGCG	1 cut(s)	32
BshFI	GGCC	4 cut(s)	107, 745, 796, 1226
BsiHKAI	GWGCWC	1 cut(s)	117
BsiSI	CCGG	5 cut(s)	61, 152, 158, 587, 692
BslI	CCNNNNNNNGG	2 cut(s)	468, 1310
BsmAI	GTCTC	2 cut(s)	1174, 1202
BsmI	GAATGC	2 cut(s)	370, 457
BsnI	GGCC	4 cut(s)	107, 745, 796, 1226
Bsp119I	TTCGAA	1 cut(s)	350
Bsp1286I	GDGCHC	1 cut(s)	117
Bsp143I	GATC	2 cut(s)	69, 874
Bsp19I	CCATGG	2 cut(s)	108, 631
BspACI	CCGC	5 cut(s)	368, 464, 509, 545, 755
BspANI	GGCC	4 cut(s)	107, 745, 796, 1226
BspCNI	CTCAG	6 cut(s)	633, 643, 751, 1035, 1099, 1265
BspFNI	CGCG	1 cut(s)	32
BspLI	GGNNCC	1 cut(s)	156
BspMI	ACCTGC	1 cut(s)	1348
BspT104I	TTCGAA	1 cut(s)	350
BsrDI	GCAATG	1 cut(s)	333
BsrI	ACTGG	1 cut(s)	1304
BssECI	CCNNGG	3 cut(s)	108, 467, 631
BssMI	GATC	2 cut(s)	69, 874
BssT1I	CCWWGG	3 cut(s)	108, 467, 631
Bst4CI	ACNGT	1 cut(s)	481
BstBI	TTCGAA	1 cut(s)	350
BstC8I	GCNNGC	2 cut(s)	95, 910
BstDEI	CTNAG	7 cut(s)	641, 651, 759, 1043, 1107, 1113, 1252
BstDSI	CCRYGG	2 cut(s)	108, 631
BstF5I	GGATG	9 cut(s)	214, 271, 450, 642, 700, 787, 907, 1057, 1069
BstFNI	CGCG	1 cut(s)	32
BstHHI	GCGC	2 cut(s)	34, 526
BstKTI	GATC	2 cut(s)	72, 877
BstMAI	GTCTC	2 cut(s)	1174, 1202
BstMBI	GATC	2 cut(s)	69, 874
BstMWI	GCNNNNNNNGC	6 cut(s)	13, 463, 1142, 1253, 1274, 1277
BstSCI	CCNGG	3 cut(s)	156, 585, 690
BstSFI	CTRYAG	1 cut(s)	1218
BstUI	CGCG	1 cut(s)	32
BstV1I	GCAGC	6 cut(s)	28, 1150, 1154, 1234, 1255, 1264
BsuI	GTATCC	3 cut(s)	583, 715, 970
BsuRI	GGCC	4 cut(s)	107, 745, 796, 1226
BtgI	CCRYGG	2 cut(s)	108, 631
BtsCI	GGATG	9 cut(s)	214, 271, 450, 642, 700, 787, 907, 1057, 1069
BtsIMutI	CAGTG	1 cut(s)	1227
BveI	ACCTGC	1 cut(s)	1348
Cac8I	GCNNGC	2 cut(s)	95, 910
CaiI	CAGNNNCTG	2 cut(s)	1259, 1280
CfoI	GCGC	2 cut(s)	34, 526
Cfr13I	GGNCC	2 cut(s)	105, 154
CseI	GACGC	1 cut(s)	38
CviAII	CATG	2 cut(s)	109, 632
DdeI	CTNAG	7 cut(s)	641, 651, 759, 1043, 1107, 1113, 1252
DpnI	GATC	2 cut(s)	71, 876
DpnII	GATC	2 cut(s)	69, 874
EciI	GGCGGA	1 cut(s)	524
Ecl136II	GAGCTC	1 cut(s)	115
Eco130I	CCWWGG	3 cut(s)	108, 467, 631
Eco147I	AGGCCT	1 cut(s)	745
Eco24I	GRGCYC	1 cut(s)	117
Eco47I	GGWCC	1 cut(s)	154
Eco53kI	GAGCTC	1 cut(s)	115
Eco57I	CTGAAG	2 cut(s)	914, 1121
EcoICRI	GAGCTC	1 cut(s)	115
EcoRI	GAATTC	1 cut(s)	196
EcoT14I	CCWWGG	3 cut(s)	108, 467, 631
EcoT38I	GRGCYC	1 cut(s)	117
ErhI	CCWWGG	3 cut(s)	108, 467, 631
FaeI	CATG	2 cut(s)	112, 635
FatI	CATG	2 cut(s)	108, 631
FauI	CCCGC	1 cut(s)	471
FbaI	TGATCA	1 cut(s)	69
FblI	GTMKAC	1 cut(s)	1217
Fnu4HI	GCNGC	7 cut(s)	17, 756, 1143, 1164, 1248, 1269, 1278
FokI	GGATG	9 cut(s)	221, 278, 457, 649, 707, 794, 914, 1064, 1076
FriOI	GRGCYC	1 cut(s)	117
Fsp4HI	GCNGC	7 cut(s)	17, 756, 1143, 1164, 1248, 1269, 1278
FspBI	CTAG	2 cut(s)	468, 1188
FspI	TGCGCA	1 cut(s)	525
GlaI	GCGC	2 cut(s)	33, 525
GluI	GCNGC	7 cut(s)	17, 756, 1143, 1164, 1248, 1269, 1278
GsaI	CCCAGC	1 cut(s)	251
GsuI	CTGGAG	2 cut(s)	119, 1257
HaeIII	GGCC	4 cut(s)	107, 745, 796, 1226
HapII	CCGG	5 cut(s)	61, 152, 158, 587, 692
HgaI	GACGC	1 cut(s)	38
HhaI	GCGC	2 cut(s)	34, 526
Hin1II	CATG	2 cut(s)	112, 635
Hin6I	GCGC	2 cut(s)	32, 524
HinP1I	GCGC	2 cut(s)	32, 524
HinfI	GANTC	4 cut(s)	64, 203, 613, 1331
HpaII	CCGG	5 cut(s)	61, 152, 158, 587, 692
HphI	GGTGA	4 cut(s)	367, 493, 1253, 1325
Hpy166II	GTNNAC	4 cut(s)	85, 477, 688, 1218
Hpy188I	TCNGA	6 cut(s)	51, 69, 177, 202, 208, 1324
Hpy8I	GTNNAC	4 cut(s)	85, 477, 688, 1218
Hpy99I	CGWCG	2 cut(s)	32, 55
HpyCH4III	ACNGT	1 cut(s)	481
HpyCH4IV	ACGT	1 cut(s)	593
HpyCH4V	TGCA	3 cut(s)	944, 1021, 1349
HpyF10VI	GCNNNNNNNGC	6 cut(s)	13, 463, 1142, 1253, 1274, 1277
HpyF3I	CTNAG	7 cut(s)	641, 651, 759, 1043, 1107, 1113, 1252
HpySE526I	ACGT	1 cut(s)	593
Hsp92II	CATG	2 cut(s)	112, 635
HspAI	GCGC	2 cut(s)	32, 524
Ksp22I	TGATCA	1 cut(s)	69
Kzo9I	GATC	2 cut(s)	69, 874
LmnI	GCTCC	6 cut(s)	4, 112, 454, 492, 1039, 1276
Lsp1109I	GCAGC	6 cut(s)	28, 1150, 1154, 1234, 1255, 1264
LweI	GCATC	3 cut(s)	627, 742, 931
MaeI	CTAG	2 cut(s)	468, 1188
MaeII	ACGT	1 cut(s)	593
MaeIII	GTNAC	2 cut(s)	581, 1176
MalI	GATC	2 cut(s)	71, 876
MboI	GATC	2 cut(s)	69, 874
MboII	GAAGA	6 cut(s)	370, 574, 898, 907, 1213, 1340
MhlI	GDGCHC	1 cut(s)	117
MluCI	AATT	7 cut(s)	196, 484, 607, 799, 950, 1004, 1067
MmeI	TCCRAC	3 cut(s)	74, 369, 966
MseI	TTAA	6 cut(s)	39, 498, 537, 603, 837, 966
MspA1I	CMGCKG	1 cut(s)	1277
MspI	CCGG	5 cut(s)	61, 152, 158, 587, 692
MspR9I	CCNGG	3 cut(s)	158, 587, 692
Mva1269I	GAATGC	2 cut(s)	370, 457
MvnI	CGCG	1 cut(s)	32
MwoI	GCNNNNNNNGC	6 cut(s)	13, 463, 1142, 1253, 1274, 1277
NciI	CCSGG	3 cut(s)	158, 587, 692
NcoI	CCATGG	2 cut(s)	108, 631
NdeII	GATC	2 cut(s)	69, 874
NlaIII	CATG	2 cut(s)	112, 635
NlaIV	GGNNCC	1 cut(s)	156
NmeAIII	GCCGAG	1 cut(s)	1271
NmuCI	GTSAC	1 cut(s)	581
NsbI	TGCGCA	1 cut(s)	525
NspV	TTCGAA	1 cut(s)	350
PceI	AGGCCT	1 cut(s)	745
PcsI	WCGNNNNNNNCGW	1 cut(s)	1181
PctI	GAATGC	2 cut(s)	370, 457
PfeI	GAWTC	4 cut(s)	64, 203, 613, 1331
PflFI	GACNNNGTC	1 cut(s)	1213
PkrI	GCNGC	7 cut(s)	18, 757, 1144, 1165, 1249, 1270, 1279
PsiI	TTATAA	1 cut(s)	923
Psp124BI	GAGCTC	1 cut(s)	117
PspFI	CCCAGC	1 cut(s)	247
PspN4I	GGNNCC	1 cut(s)	156
PspPI	GGNCC	2 cut(s)	105, 154
PstNI	CAGNNNCTG	2 cut(s)	1259, 1280
PsyI	GACNNNGTC	1 cut(s)	1213
PvuII	CAGCTG	1 cut(s)	1277
SacI	GAGCTC	1 cut(s)	117
SaqAI	TTAA	6 cut(s)	39, 498, 537, 603, 837, 966
SatI	GCNGC	7 cut(s)	17, 756, 1143, 1164, 1248, 1269, 1278
Sau3AI	GATC	2 cut(s)	69, 874
Sau96I	GGNCC	2 cut(s)	105, 154
ScrFI	CCNGG	3 cut(s)	158, 587, 692
SduI	GDGCHC	1 cut(s)	117
SfaNI	GCATC	3 cut(s)	627, 742, 931
SfcI	CTRYAG	1 cut(s)	1218
SfuI	TTCGAA	1 cut(s)	350
SinI	GGWCC	1 cut(s)	154
SmlI	CTYRAG	1 cut(s)	116
SmoI	CTYRAG	1 cut(s)	116
Sse9I	AATT	7 cut(s)	196, 484, 607, 799, 950, 1004, 1067
SseBI	AGGCCT	1 cut(s)	745
SsiI	CCGC	5 cut(s)	368, 464, 509, 545, 755
SspMI	CTAG	2 cut(s)	468, 1188
SstI	GAGCTC	1 cut(s)	117
StuI	AGGCCT	1 cut(s)	745
StyD4I	CCNGG	3 cut(s)	156, 585, 690
StyI	CCWWGG	3 cut(s)	108, 467, 631
TaaI	ACNGT	1 cut(s)	481
TaiI	ACGT	1 cut(s)	596
TaqI	TCGA	2 cut(s)	147, 350
TasI	AATT	7 cut(s)	196, 484, 607, 799, 950, 1004, 1067
TauI	GCSGC	1 cut(s)	758
TfiI	GAWTC	4 cut(s)	64, 203, 613, 1331
Tru1I	TTAA	6 cut(s)	39, 498, 537, 603, 837, 966
Tru9I	TTAA	6 cut(s)	39, 498, 537, 603, 837, 966
TscAI	CASTG	1 cut(s)	1234
TseFI	GTSAC	1 cut(s)	581
TseI	GCWGC	6 cut(s)	16, 1142, 1163, 1247, 1268, 1277
Tsp45I	GTSAC	1 cut(s)	581
TspDTI	ATGAA	9 cut(s)	292, 305, 354, 377, 711, 941, 1018, 1080, 1341
TspGWI	ACGGA	1 cut(s)	1173
TspRI	CASTG	1 cut(s)	1234
Tth111I	GACNNNGTC	1 cut(s)	1213
VpaK11BI	GGWCC	1 cut(s)	154
XapI	RAATTY	4 cut(s)	196, 484, 799, 950
XmaJI	CCTAGG	1 cut(s)	467
XmiI	GTMKAC	1 cut(s)	1217
XspI	CTAG	2 cut(s)	468, 1188

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.