Pentatricopeptide repeat-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G49240 |
| fragaria_vesca | FvH4_2g09580 |
| malus_domestica | MD07G1288700.v1.1 |
| prunus_persica | Prupe.2G310200_v2.0.a1 |
| pyrus_communis | pycom01g22880 |
| rosa_chinensis | RchiOBHm_Chr1g0380631 |
| rosa_laevigata | RLG00000026280 |
| rosa_multiflora | Rmu_sc0004647.1_g000010 Rmu_sc0020141.1_g000001 Rmu_sc0020141.1_g000002 Rmu_sc0021483.1_g000003 Rmu_ssc0000015.1_g000013 |
| rosa_roxburghii | Rroxscaffold_4G00279120 |
| rosa_rugosa | Rorug01G0122900 Rorug01G0423100 |
| rosa_samantha | Rh1AG447400 Rh1BG113000 Rh1BG151000 Rh1BG402900 Rh1CG417300 Rh1DG182800 Rh1DG433200 Rh7CG247500 |
| rosa_wichuraiana | Rw1G038940 Rw7G019950 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 1386, 1496 |
| AarI | CACCTGC | 1 cut(s) | 1808 |
| AbsI | CCTCGAGG | 1 cut(s) | 344 |
| Acc36I | ACCTGC | 3 cut(s) | 1808, 1849, 1945 |
| AccI | GTMKAC | 1 cut(s) | 1796 |
| AccII | CGCG | 1 cut(s) | 356 |
| AccIII | TCCGGA | 1 cut(s) | 1159 |
| AcsI | RAATTY | 5 cut(s) | 757, 1057, 1271, 1577, 1912 |
| AcuI | CTGAAG | 1 cut(s) | 1701 |
| AcyI | GRCGYC | 1 cut(s) | 594 |
| AfaI | GTAC | 2 cut(s) | 1262, 1337 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 349, 390, 1365, 1791 |
| AgsI | TTSAA | 4 cut(s) | 604, 799, 1177, 1577 |
| AhdI | GACNNNNNGTC | 2 cut(s) | 460, 1168 |
| AjnI | CCWGG | 1 cut(s) | 483 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 791, 823 |
| Alw21I | GWGCWC | 1 cut(s) | 681 |
| Alw26I | GTCTC | 1 cut(s) | 1781 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1850 |
| Ama87I | CYCGRG | 1 cut(s) | 344 |
| Aor13HI | TCCGGA | 1 cut(s) | 1159 |
| AoxI | GGCC | 8 cut(s) | 351, 392, 885, 945, 996, 1367, 1803, 1962 |
| ApeKI | GCWGC | 6 cut(s) | 1328, 1706, 1715, 1736, 1826, 1850 |
| ApoI | RAATTY | 5 cut(s) | 757, 1057, 1271, 1577, 1912 |
| AseI | ATTAAT | 1 cut(s) | 1406 |
| AspLEI | GCGC | 2 cut(s) | 358, 712 |
| AspS9I | GGNCC | 2 cut(s) | 393, 715 |
| AsuC2I | CCSGG | 1 cut(s) | 1265 |
| AsuHPI | GGTGA | 6 cut(s) | 23, 461, 472, 940, 1468, 1832 |
| AvaI | CYCGRG | 1 cut(s) | 344 |
| AvaII | GGWCC | 1 cut(s) | 715 |
| BanII | GRGCYC | 2 cut(s) | 177, 681 |
| BbsI | GAAGAC | 2 cut(s) | 938, 1508 |
| Bbv12I | GWGCWC | 1 cut(s) | 681 |
| BbvCI | CCTCAGC | 2 cut(s) | 1224, 1701 |
| BbvI | GCAGC | 6 cut(s) | 1340, 1718, 1723, 1727, 1813, 1837 |
| BciT130I | CCWGG | 1 cut(s) | 485 |
| BciVI | GTATCC | 1 cut(s) | 1288 |
| BclI | TGATCA | 1 cut(s) | 585 |
| BcnI | CCSGG | 1 cut(s) | 1265 |
| BcoDI | GTCTC | 1 cut(s) | 1781 |
| BfaI | CTAG | 1 cut(s) | 44 |
| BfmI | CTRYAG | 1 cut(s) | 1842 |
| BfuAI | ACCTGC | 3 cut(s) | 1808, 1849, 1945 |
| BfuI | GTATCC | 1 cut(s) | 1288 |
| BmcAI | AGTACT | 1 cut(s) | 1337 |
| Bme1390I | CCNGG | 2 cut(s) | 485, 1265 |
| Bme18I | GGWCC | 1 cut(s) | 715 |
| BmeRI | GACNNNNNGTC | 2 cut(s) | 460, 1168 |
| BmeT110I | CYCGRG | 1 cut(s) | 344 |
| BmgT120I | GGNCC | 2 cut(s) | 393, 715 |
| BmiI | GGNNCC | 1 cut(s) | 717 |
| BmrFI | CCNGG | 2 cut(s) | 485, 1265 |
| BmsI | GCATC | 7 cut(s) | 177, 685, 955, 1200, 1315, 1345, 1858 |
| BpiI | GAAGAC | 2 cut(s) | 938, 1508 |
| Bpu10I | CCTNAGC | 4 cut(s) | 1224, 1686, 1692, 1701 |
| BpuEI | CTTGAG | 3 cut(s) | 991, 1021, 1451 |
| BpuMI | CCSGG | 1 cut(s) | 1265 |
| BsaAI | YACGTR | 1 cut(s) | 1278 |
| BsaHI | GRCGYC | 1 cut(s) | 594 |
| BsaJI | CCNNGG | 5 cut(s) | 483, 699, 888, 924, 1040 |
| BsaWI | WCCGGW | 1 cut(s) | 1159 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 804, 834 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 349, 390, 1365, 1791 |
| Bse118I | RCCGGY | 1 cut(s) | 390 |
| Bse1I | ACTGG | 1 cut(s) | 439 |
| BseAI | TCCGGA | 1 cut(s) | 1159 |
| BseBI | CCWGG | 1 cut(s) | 485 |
| BseDI | CCNNGG | 5 cut(s) | 483, 699, 888, 924, 1040 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 349, 390, 1365, 1791 |
| BseMII | CTCAG | 9 cut(s) | 26, 1205, 1215, 1323, 1355, 1607, 1692, 1934, 1941 |
| BseNI | ACTGG | 1 cut(s) | 439 |
| BseRI | GAGGAG | 5 cut(s) | 362, 806, 1241, 1601, 1673 |
| BseXI | GCAGC | 6 cut(s) | 1340, 1718, 1723, 1727, 1813, 1837 |
| BsgI | GTGCAG | 1 cut(s) | 1118 |
| Bsh1236I | CGCG | 1 cut(s) | 356 |
| BshFI | GGCC | 8 cut(s) | 353, 394, 887, 947, 998, 1369, 1805, 1964 |
| BsiHKAI | GWGCWC | 1 cut(s) | 681 |
| BsiHKCI | CYCGRG | 1 cut(s) | 344 |
| BsiSI | CCGG | 5 cut(s) | 288, 391, 713, 1160, 1265 |
| BslFI | GGGAC | 1 cut(s) | 448 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 349, 390, 1365, 1791 |
| BsmAI | GTCTC | 1 cut(s) | 1781 |
| BsmFI | GGGAC | 1 cut(s) | 448 |
| BsmI | GAATGC | 1 cut(s) | 315 |
| BsnI | GGCC | 8 cut(s) | 353, 394, 887, 947, 998, 1369, 1805, 1964 |
| BsoBI | CYCGRG | 1 cut(s) | 344 |
| Bsp1286I | GDGCHC | 2 cut(s) | 177, 681 |
| Bsp13I | TCCGGA | 1 cut(s) | 1159 |
| Bsp143I | GATC | 1 cut(s) | 585 |
| Bsp19I | CCATGG | 1 cut(s) | 888 |
| BspANI | GGCC | 8 cut(s) | 353, 394, 887, 947, 998, 1369, 1805, 1964 |
| BspCNI | CTCAG | 9 cut(s) | 27, 1206, 1216, 1324, 1356, 1608, 1693, 1933, 1942 |
| BspEI | TCCGGA | 1 cut(s) | 1159 |
| BspFNI | CGCG | 1 cut(s) | 356 |
| BspHI | TCATGA | 1 cut(s) | 864 |
| BspLI | GGNNCC | 1 cut(s) | 717 |
| BspMAI | CTGCAG | 1 cut(s) | 1846 |
| BspMI | ACCTGC | 3 cut(s) | 1808, 1849, 1945 |
| BspQI | GCTCTTC | 1 cut(s) | 1881 |
| BsrFI | RCCGGY | 1 cut(s) | 390 |
| BsrI | ACTGG | 1 cut(s) | 439 |
| BssAI | RCCGGY | 1 cut(s) | 390 |
| BssECI | CCNNGG | 5 cut(s) | 483, 699, 888, 924, 1040 |
| BssMI | GATC | 1 cut(s) | 585 |
| BssNI | GRCGYC | 1 cut(s) | 594 |
| BssT1I | CCWWGG | 3 cut(s) | 699, 888, 924 |
| Bst2UI | CCWGG | 1 cut(s) | 485 |
| Bst4CI | ACNGT | 2 cut(s) | 409, 1858 |
| Bst6I | CTCTTC | 2 cut(s) | 190, 1881 |
| BstACI | GRCGYC | 1 cut(s) | 594 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 1736, 1850 |
| BstBAI | YACGTR | 1 cut(s) | 1278 |
| BstC8I | GCNNGC | 6 cut(s) | 155, 392, 490, 551, 1097, 1803 |
| BstDSI | CCRYGG | 1 cut(s) | 888 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 347 |
| BstFNI | CGCG | 1 cut(s) | 356 |
| BstHHI | GCGC | 2 cut(s) | 358, 712 |
| BstKTI | GATC | 1 cut(s) | 588 |
| BstMAI | GTCTC | 1 cut(s) | 1781 |
| BstMBI | GATC | 1 cut(s) | 585 |
| BstNI | CCWGG | 1 cut(s) | 485 |
| BstSCI | CCNGG | 2 cut(s) | 483, 1263 |
| BstSFI | CTRYAG | 1 cut(s) | 1842 |
| BstSNI | TACGTA | 1 cut(s) | 1278 |
| BstUI | CGCG | 1 cut(s) | 356 |
| BstV1I | GCAGC | 6 cut(s) | 1340, 1718, 1723, 1727, 1813, 1837 |
| BstV2I | GAAGAC | 2 cut(s) | 938, 1508 |
| BsuI | GTATCC | 1 cut(s) | 1288 |
| BsuRI | GGCC | 8 cut(s) | 353, 394, 887, 947, 998, 1369, 1805, 1964 |
| BtgI | CCRYGG | 1 cut(s) | 888 |
| BtsIMutI | CAGTG | 2 cut(s) | 1806, 1863 |
| BveI | ACCTGC | 3 cut(s) | 1808, 1849, 1945 |
| Cac8I | GCNNGC | 6 cut(s) | 155, 392, 490, 551, 1097, 1803 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1850 |
| CciI | TCATGA | 1 cut(s) | 864 |
| CfoI | GCGC | 2 cut(s) | 358, 712 |
| Cfr10I | RCCGGY | 1 cut(s) | 390 |
| Cfr13I | GGNCC | 2 cut(s) | 393, 715 |
| CseI | GACGC | 2 cut(s) | 146, 602 |
| Csp6I | GTAC | 2 cut(s) | 1261, 1336 |
| CviAII | CATG | 3 cut(s) | 865, 889, 1555 |
| CviQI | GTAC | 2 cut(s) | 1261, 1336 |
| DpnI | GATC | 1 cut(s) | 587 |
| DpnII | GATC | 1 cut(s) | 585 |
| DriI | GACNNNNNGTC | 2 cut(s) | 460, 1168 |
| Eam1104I | CTCTTC | 2 cut(s) | 190, 1881 |
| Eam1105I | GACNNNNNGTC | 2 cut(s) | 460, 1168 |
| EarI | CTCTTC | 2 cut(s) | 190, 1881 |
| EciI | GGCGGA | 2 cut(s) | 320, 1097 |
| Ecl136II | GAGCTC | 1 cut(s) | 679 |
| Eco105I | TACGTA | 1 cut(s) | 1278 |
| Eco130I | CCWWGG | 3 cut(s) | 699, 888, 924 |
| Eco147I | AGGCCT | 1 cut(s) | 998 |
| Eco24I | GRGCYC | 2 cut(s) | 177, 681 |
| Eco47I | GGWCC | 1 cut(s) | 715 |
| Eco53kI | GAGCTC | 1 cut(s) | 679 |
| Eco57I | CTGAAG | 1 cut(s) | 1701 |
| Eco88I | CYCGRG | 1 cut(s) | 344 |
| EcoICRI | GAGCTC | 1 cut(s) | 679 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 347 |
| EcoRI | GAATTC | 1 cut(s) | 757 |
| EcoRII | CCWGG | 1 cut(s) | 483 |
| EcoT14I | CCWWGG | 3 cut(s) | 699, 888, 924 |
| EcoT38I | GRGCYC | 2 cut(s) | 177, 681 |
| ErhI | CCWWGG | 3 cut(s) | 699, 888, 924 |
| FaeI | CATG | 3 cut(s) | 868, 892, 1558 |
| FaqI | GGGAC | 1 cut(s) | 448 |
| FatI | CATG | 3 cut(s) | 864, 888, 1554 |
| FauI | CCCGC | 2 cut(s) | 481, 1044 |
| FbaI | TGATCA | 1 cut(s) | 585 |
| FblI | GTMKAC | 1 cut(s) | 1796 |
| FriOI | GRGCYC | 2 cut(s) | 177, 681 |
| FspBI | CTAG | 1 cut(s) | 44 |
| GlaI | GCGC | 2 cut(s) | 357, 711 |
| HaeIII | GGCC | 8 cut(s) | 353, 394, 887, 947, 998, 1369, 1805, 1964 |
| HapII | CCGG | 5 cut(s) | 288, 391, 713, 1160, 1265 |
| HgaI | GACGC | 2 cut(s) | 146, 602 |
| HhaI | GCGC | 2 cut(s) | 358, 712 |
| Hin1I | GRCGYC | 1 cut(s) | 594 |
| Hin1II | CATG | 3 cut(s) | 868, 892, 1558 |
| Hin6I | GCGC | 2 cut(s) | 356, 710 |
| HinP1I | GCGC | 2 cut(s) | 356, 710 |
| HincII | GTYRAC | 1 cut(s) | 412 |
| HindII | GTYRAC | 1 cut(s) | 412 |
| HinfI | GANTC | 4 cut(s) | 764, 905, 1781, 1928 |
| HpaII | CCGG | 5 cut(s) | 288, 391, 713, 1160, 1265 |
| HphI | GGTGA | 6 cut(s) | 23, 461, 472, 940, 1468, 1832 |
| Hpy166II | GTNNAC | 3 cut(s) | 412, 1261, 1797 |
| Hpy188I | TCNGA | 8 cut(s) | 454, 531, 627, 763, 769, 1482, 1786, 1923 |
| Hpy188III | TCNNGA | 5 cut(s) | 865, 1132, 1160, 1468, 1883 |
| Hpy8I | GTNNAC | 3 cut(s) | 412, 1261, 1797 |
| Hpy99I | CGWCG | 4 cut(s) | 147, 150, 153, 162 |
| HpyCH4III | ACNGT | 2 cut(s) | 409, 1858 |
| HpyCH4IV | ACGT | 2 cut(s) | 142, 1277 |
| HpyCH4V | TGCA | 9 cut(s) | 1099, 1200, 1328, 1594, 1730, 1817, 1844, 1871, 1946 |
| HpySE526I | ACGT | 2 cut(s) | 142, 1277 |
| Hsp92I | GRCGYC | 1 cut(s) | 594 |
| Hsp92II | CATG | 3 cut(s) | 868, 892, 1558 |
| HspAI | GCGC | 2 cut(s) | 356, 710 |
| Kpn2I | TCCGGA | 1 cut(s) | 1159 |
| KroI | GCCGGC | 1 cut(s) | 390 |
| KroNI | GCCGGC | 1 cut(s) | 392 |
| Ksp22I | TGATCA | 1 cut(s) | 585 |
| Kzo9I | GATC | 1 cut(s) | 585 |
| LguI | GCTCTTC | 1 cut(s) | 1881 |
| LmnI | GCTCC | 4 cut(s) | 676, 1065, 1228, 1612 |
| Lsp1109I | GCAGC | 6 cut(s) | 1340, 1718, 1723, 1727, 1813, 1837 |
| LweI | GCATC | 7 cut(s) | 177, 685, 955, 1200, 1315, 1345, 1858 |
| MaeI | CTAG | 1 cut(s) | 44 |
| MaeII | ACGT | 2 cut(s) | 142, 1277 |
| MalI | GATC | 1 cut(s) | 587 |
| MboI | GATC | 1 cut(s) | 585 |
| MfeI | CAATTG | 2 cut(s) | 385, 1193 |
| MhlI | GDGCHC | 2 cut(s) | 177, 681 |
| MmeI | TCCRAC | 1 cut(s) | 1539 |
| MroI | TCCGGA | 1 cut(s) | 1159 |
| MroNI | GCCGGC | 1 cut(s) | 390 |
| MseI | TTAA | 7 cut(s) | 1071, 1110, 1406, 1410, 1539, 1581, 1605 |
| MspA1I | CMGCKG | 1 cut(s) | 1331 |
| MspI | CCGG | 5 cut(s) | 288, 391, 713, 1160, 1265 |
| MspR9I | CCNGG | 2 cut(s) | 485, 1265 |
| MunI | CAATTG | 2 cut(s) | 385, 1193 |
| Mva1269I | GAATGC | 1 cut(s) | 315 |
| MvaI | CCWGG | 1 cut(s) | 485 |
| MvnI | CGCG | 1 cut(s) | 356 |
| NaeI | GCCGGC | 1 cut(s) | 392 |
| NciI | CCSGG | 1 cut(s) | 1265 |
| NcoI | CCATGG | 1 cut(s) | 888 |
| NdeII | GATC | 1 cut(s) | 585 |
| NgoMIV | GCCGGC | 1 cut(s) | 390 |
| NlaIII | CATG | 3 cut(s) | 868, 892, 1558 |
| NlaIV | GGNNCC | 1 cut(s) | 717 |
| NmeAIII | GCCGAG | 1 cut(s) | 1065 |
| PacI | TTAATTAA | 1 cut(s) | 1410 |
| PaeR7I | CTCGAG | 1 cut(s) | 344 |
| PagI | TCATGA | 1 cut(s) | 864 |
| PaqCI | CACCTGC | 1 cut(s) | 1808 |
| PceI | AGGCCT | 1 cut(s) | 998 |
| PciSI | GCTCTTC | 1 cut(s) | 1881 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 154 |
| PctI | GAATGC | 1 cut(s) | 315 |
| PdiI | GCCGGC | 1 cut(s) | 392 |
| PfeI | GAWTC | 4 cut(s) | 764, 905, 1781, 1928 |
| PflFI | GACNNNGTC | 1 cut(s) | 1792 |
| Ppu21I | YACGTR | 1 cut(s) | 1278 |
| PshBI | ATTAAT | 1 cut(s) | 1406 |
| PsiI | TTATAA | 2 cut(s) | 1386, 1496 |
| Psp124BI | GAGCTC | 1 cut(s) | 681 |
| Psp6I | CCWGG | 1 cut(s) | 483 |
| PspGI | CCWGG | 1 cut(s) | 483 |
| PspN4I | GGNNCC | 1 cut(s) | 717 |
| PspPI | GGNCC | 2 cut(s) | 393, 715 |
| PspXI | VCTCGAGB | 1 cut(s) | 344 |
| PstI | CTGCAG | 1 cut(s) | 1846 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1850 |
| PsyI | GACNNNGTC | 1 cut(s) | 1792 |
| PvuII | CAGCTG | 1 cut(s) | 1331 |
| RsaI | GTAC | 2 cut(s) | 1262, 1337 |
| RsaNI | GTAC | 2 cut(s) | 1261, 1336 |
| SacI | GAGCTC | 1 cut(s) | 681 |
| SapI | GCTCTTC | 1 cut(s) | 1881 |
| SaqAI | TTAA | 7 cut(s) | 1071, 1110, 1406, 1410, 1539, 1581, 1605 |
| Sau3AI | GATC | 1 cut(s) | 585 |
| Sau96I | GGNCC | 2 cut(s) | 393, 715 |
| ScaI | AGTACT | 1 cut(s) | 1337 |
| ScrFI | CCNGG | 2 cut(s) | 485, 1265 |
| SduI | GDGCHC | 2 cut(s) | 177, 681 |
| SfaNI | GCATC | 7 cut(s) | 177, 685, 955, 1200, 1315, 1345, 1858 |
| SfcI | CTRYAG | 1 cut(s) | 1842 |
| Sfr274I | CTCGAG | 1 cut(s) | 344 |
| SinI | GGWCC | 1 cut(s) | 715 |
| SlaI | CTCGAG | 1 cut(s) | 344 |
| SmlI | CTYRAG | 4 cut(s) | 344, 970, 1000, 1466 |
| SmoI | CTYRAG | 4 cut(s) | 344, 970, 1000, 1466 |
| SnaBI | TACGTA | 1 cut(s) | 1278 |
| SseBI | AGGCCT | 1 cut(s) | 998 |
| SspMI | CTAG | 1 cut(s) | 44 |
| SstI | GAGCTC | 1 cut(s) | 681 |
| StuI | AGGCCT | 1 cut(s) | 998 |
| StyD4I | CCNGG | 2 cut(s) | 483, 1263 |
| StyI | CCWWGG | 3 cut(s) | 699, 888, 924 |
| TaaI | ACNGT | 2 cut(s) | 409, 1858 |
| TaiI | ACGT | 2 cut(s) | 145, 1280 |
| TaqI | TCGA | 5 cut(s) | 100, 171, 345, 1548, 1832 |
| TatI | WGTACW | 1 cut(s) | 1335 |
| TauI | GCSGC | 4 cut(s) | 134, 137, 356, 549 |
| TfiI | GAWTC | 4 cut(s) | 764, 905, 1781, 1928 |
| Tru1I | TTAA | 7 cut(s) | 1071, 1110, 1406, 1410, 1539, 1581, 1605 |
| Tru9I | TTAA | 7 cut(s) | 1071, 1110, 1406, 1410, 1539, 1581, 1605 |
| TscAI | CASTG | 2 cut(s) | 1813, 1863 |
| TseI | GCWGC | 6 cut(s) | 1328, 1706, 1715, 1736, 1826, 1850 |
| TspDTI | ATGAA | 7 cut(s) | 79, 466, 853, 866, 1284, 1514, 1653 |
| TspRI | CASTG | 2 cut(s) | 1813, 1863 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1792 |
| VpaK11BI | GGWCC | 1 cut(s) | 715 |
| VspI | ATTAAT | 1 cut(s) | 1406 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 347 |
| XapI | RAATTY | 5 cut(s) | 757, 1057, 1271, 1577, 1912 |
| XhoI | CTCGAG | 1 cut(s) | 344 |
| XmiI | GTMKAC | 1 cut(s) | 1796 |
| XspI | CTAG | 1 cut(s) | 44 |
| ZrmI | AGTACT | 1 cut(s) | 1337 |