Prupe.2G310200_v2.0.a1

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
Physical Location & Seq
Reverse (-)
29363695 .. 29365662
1968 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G310200.1

Sequence Viewer

Length: 1968 bp
ATGGCTCTCTCAAAACCCACCTTCCTCACTCACCTGAGAACCCTAGCCAAACCCCCCAACTGCCACCACCCAACCACACCACCCTCCTTCATCTCCCTTCGATTTCTCTCCTTCGCCACCCCAGAAGAAGCCGCCGCCGAACGTCGTCGTCGCAAGCGTCGCCTCCGCATCGAGCCCCCTCTCTCTTCCCTCCACCGCAACCAGCAACAACAGCAACAACAACAATCCCCGAAACCCCAACAAAACCCTAACGCCCCGAAACTCCCCGAACCCGTTTCGGCTCTCTCCGGCAACCGCCTCAACCTCCACAACCGCATTCTCACTCTCGTCCGCCAAAACGACCTCGAGGAGGCCGCGCTCTACACTCGCCATTCCATCTATTCCAATTGCCGGCCCACCATTTTCACAGTCAACTCTGTGCTTACCGCACAGCTTCGCCAGTCCAAGTATTCTGACCTCTTGTCCCTTCACCGCTTCATCACCCAGGCGGGCGTTGCCCCCAATATCATCACTCACAATCTCATCTTTCAGACTTATTTGGATTGCCGCAAGCCCGATACTGCTATGGAAAACTACAAGCAGTTGATCAATGACGCCCCTTTCAACCCTTCCCCAACTACTTATCGGATTTTGATAAAAGGTTTGGTGGATAACAACAAGCTGGACAGGGCTATGGAGCTCAAAGAGGAAATTGATGCCAAGGGTTTTGCGCCGGACCCTGTTGTTTATCATTATTTGATGGTGGGCTGTGTGAAGAATTCGGATTCGGATGGAGTTTTTAGGCTTTACGAGGAGTTGAAGGAGAAGTTGGGAGGGGTTGTAGAAGATGGGATTGTCTATGGGAACTTGATGAAGGGGTATTTCATGAGGGGGATGGAGAAGGAGGCCATGGAGTGTTATGAGGAATCTTTTGGGGAGAGTTCCAAGGTGAAGACGAGTGCTGTGGCCTATAATTCGGTTTTGGATGCCTTGAGCAAGAATGGTAAGTTTGATGAGGCCTTGAGGTTGTTTGATAGGATGGTCGCAGAGCATAACCCGCCGAGGCGTTTGGCTGTGAATTTGGGGAGCTTTAATGTGATGGCGGATGGGTATTGCGTGCAGGGGAGGTTTAAGGAAGCCATTGAGGTTTTCAGGAAGATGGGAGATTATAGGTGTAGTCCGGACACCTTGTCATTCAATAATTTGATTGAGCAATTGTGCAAGAATGGGATGCTGAGTGAAGCTGAGGAGCTTTATGGAGAAATGAGCGACAAGGGAGTGTACCCGGATGAATTTACGTATGTTTTGTTGATGGATACTTGTTTTGAGGAAAATAGGGCTGATGATGCAGCTGAGTACTTTAGGAAAATGGTTGATGCCAAACTGAGGCCAAACTTGGCTGTTTATAATAGGTTGGTTGATGGATTAATTAAGGTAGGGAAGGTTGATGAGGCAAAGTCGTTTTTTGATTTGATGGTGAAGAAGCTCAAGATGGATATTCCGAGCTATCAGTTTATAATGAAGACATTGAGTGAGGCAGGGAAATTGGATGAGGTGCTTAATGTGGTCGATACCATGTTGGATGATGATGGGGTTGAATTTAATGAGGAGTTGCAGGAGTTTGTTAAAGGGGAGCTGAGAAAGGAGGGGAGAGAGGATGAAGTGGGGAAGCTAATGGAGGAGAAGGAAAGGCAGAAAGCTGAAGCTAAGGCTAAGGAGGCTGAGGCAGCAGAAGCAGCAAAGAGAAGTGCAAGAGCTGCTGTGTCCTCCTTACTTCCTTCCAAGTTGTTTGGGAATAAAGAATCCGAGACAGGGTCTACGCAGGCCACTGAAAATGCAGGTGAAGCTGCCTCGACACAACCTGCAGAGGCTGCCACAGTGAGTGGAGATGCACAAGCTGGTCAGGAAGAGCGTGGTGGAGAAGAAGGCAAAAATTCAGCTCAGATAGAATCCAAAAGTGATGGTGCAACTGAGCAGGTATTGGCCTGA

Protein Analysis

656

Amino Acids

73.48

Weight (kDa)

5.55

Isoelectric Point (pI)

43.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 1386, 1496
AarI CACCTGC 1 cut(s) 1808
AbsI CCTCGAGG 1 cut(s) 344
Acc36I ACCTGC 3 cut(s) 1808, 1849, 1945
AccI GTMKAC 1 cut(s) 1796
AccII CGCG 1 cut(s) 356
AccIII TCCGGA 1 cut(s) 1159
AcsI RAATTY 5 cut(s) 757, 1057, 1271, 1577, 1912
AcuI CTGAAG 1 cut(s) 1701
AcyI GRCGYC 1 cut(s) 594
AfaI GTAC 2 cut(s) 1262, 1337
AfiI CCNNNNNNNGG 4 cut(s) 349, 390, 1365, 1791
AgsI TTSAA 4 cut(s) 604, 799, 1177, 1577
AhdI GACNNNNNGTC 2 cut(s) 460, 1168
AjnI CCWGG 1 cut(s) 483
AjuI GAANNNNNNNTTGG 2 cut(s) 791, 823
Alw21I GWGCWC 1 cut(s) 681
Alw26I GTCTC 1 cut(s) 1781
AlwNI CAGNNNCTG 1 cut(s) 1850
Ama87I CYCGRG 1 cut(s) 344
Aor13HI TCCGGA 1 cut(s) 1159
AoxI GGCC 8 cut(s) 351, 392, 885, 945, 996, 1367, 1803, 1962
ApeKI GCWGC 6 cut(s) 1328, 1706, 1715, 1736, 1826, 1850
ApoI RAATTY 5 cut(s) 757, 1057, 1271, 1577, 1912
AseI ATTAAT 1 cut(s) 1406
AspLEI GCGC 2 cut(s) 358, 712
AspS9I GGNCC 2 cut(s) 393, 715
AsuC2I CCSGG 1 cut(s) 1265
AsuHPI GGTGA 6 cut(s) 23, 461, 472, 940, 1468, 1832
AvaI CYCGRG 1 cut(s) 344
AvaII GGWCC 1 cut(s) 715
BanII GRGCYC 2 cut(s) 177, 681
BbsI GAAGAC 2 cut(s) 938, 1508
Bbv12I GWGCWC 1 cut(s) 681
BbvCI CCTCAGC 2 cut(s) 1224, 1701
BbvI GCAGC 6 cut(s) 1340, 1718, 1723, 1727, 1813, 1837
BciT130I CCWGG 1 cut(s) 485
BciVI GTATCC 1 cut(s) 1288
BclI TGATCA 1 cut(s) 585
BcnI CCSGG 1 cut(s) 1265
BcoDI GTCTC 1 cut(s) 1781
BfaI CTAG 1 cut(s) 44
BfmI CTRYAG 1 cut(s) 1842
BfuAI ACCTGC 3 cut(s) 1808, 1849, 1945
BfuI GTATCC 1 cut(s) 1288
BmcAI AGTACT 1 cut(s) 1337
Bme1390I CCNGG 2 cut(s) 485, 1265
Bme18I GGWCC 1 cut(s) 715
BmeRI GACNNNNNGTC 2 cut(s) 460, 1168
BmeT110I CYCGRG 1 cut(s) 344
BmgT120I GGNCC 2 cut(s) 393, 715
BmiI GGNNCC 1 cut(s) 717
BmrFI CCNGG 2 cut(s) 485, 1265
BmsI GCATC 7 cut(s) 177, 685, 955, 1200, 1315, 1345, 1858
BpiI GAAGAC 2 cut(s) 938, 1508
Bpu10I CCTNAGC 4 cut(s) 1224, 1686, 1692, 1701
BpuEI CTTGAG 3 cut(s) 991, 1021, 1451
BpuMI CCSGG 1 cut(s) 1265
BsaAI YACGTR 1 cut(s) 1278
BsaHI GRCGYC 1 cut(s) 594
BsaJI CCNNGG 5 cut(s) 483, 699, 888, 924, 1040
BsaWI WCCGGW 1 cut(s) 1159
BsaXI ACNNNNNCTCC 2 cut(s) 804, 834
Bsc4I CCNNNNNNNGG 4 cut(s) 349, 390, 1365, 1791
Bse118I RCCGGY 1 cut(s) 390
Bse1I ACTGG 1 cut(s) 439
BseAI TCCGGA 1 cut(s) 1159
BseBI CCWGG 1 cut(s) 485
BseDI CCNNGG 5 cut(s) 483, 699, 888, 924, 1040
BseLI CCNNNNNNNGG 4 cut(s) 349, 390, 1365, 1791
BseMII CTCAG 9 cut(s) 26, 1205, 1215, 1323, 1355, 1607, 1692, 1934, 1941
BseNI ACTGG 1 cut(s) 439
BseRI GAGGAG 5 cut(s) 362, 806, 1241, 1601, 1673
BseXI GCAGC 6 cut(s) 1340, 1718, 1723, 1727, 1813, 1837
BsgI GTGCAG 1 cut(s) 1118
Bsh1236I CGCG 1 cut(s) 356
BshFI GGCC 8 cut(s) 353, 394, 887, 947, 998, 1369, 1805, 1964
BsiHKAI GWGCWC 1 cut(s) 681
BsiHKCI CYCGRG 1 cut(s) 344
BsiSI CCGG 5 cut(s) 288, 391, 713, 1160, 1265
BslFI GGGAC 1 cut(s) 448
BslI CCNNNNNNNGG 4 cut(s) 349, 390, 1365, 1791
BsmAI GTCTC 1 cut(s) 1781
BsmFI GGGAC 1 cut(s) 448
BsmI GAATGC 1 cut(s) 315
BsnI GGCC 8 cut(s) 353, 394, 887, 947, 998, 1369, 1805, 1964
BsoBI CYCGRG 1 cut(s) 344
Bsp1286I GDGCHC 2 cut(s) 177, 681
Bsp13I TCCGGA 1 cut(s) 1159
Bsp143I GATC 1 cut(s) 585
Bsp19I CCATGG 1 cut(s) 888
BspANI GGCC 8 cut(s) 353, 394, 887, 947, 998, 1369, 1805, 1964
BspCNI CTCAG 9 cut(s) 27, 1206, 1216, 1324, 1356, 1608, 1693, 1933, 1942
BspEI TCCGGA 1 cut(s) 1159
BspFNI CGCG 1 cut(s) 356
BspHI TCATGA 1 cut(s) 864
BspLI GGNNCC 1 cut(s) 717
BspMAI CTGCAG 1 cut(s) 1846
BspMI ACCTGC 3 cut(s) 1808, 1849, 1945
BspQI GCTCTTC 1 cut(s) 1881
BsrFI RCCGGY 1 cut(s) 390
BsrI ACTGG 1 cut(s) 439
BssAI RCCGGY 1 cut(s) 390
BssECI CCNNGG 5 cut(s) 483, 699, 888, 924, 1040
BssMI GATC 1 cut(s) 585
BssNI GRCGYC 1 cut(s) 594
BssT1I CCWWGG 3 cut(s) 699, 888, 924
Bst2UI CCWGG 1 cut(s) 485
Bst4CI ACNGT 2 cut(s) 409, 1858
Bst6I CTCTTC 2 cut(s) 190, 1881
BstACI GRCGYC 1 cut(s) 594
BstAPI GCANNNNNTGC 2 cut(s) 1736, 1850
BstBAI YACGTR 1 cut(s) 1278
BstC8I GCNNGC 6 cut(s) 155, 392, 490, 551, 1097, 1803
BstDSI CCRYGG 1 cut(s) 888
BstENI CCTNNNNNAGG 1 cut(s) 347
BstFNI CGCG 1 cut(s) 356
BstHHI GCGC 2 cut(s) 358, 712
BstKTI GATC 1 cut(s) 588
BstMAI GTCTC 1 cut(s) 1781
BstMBI GATC 1 cut(s) 585
BstNI CCWGG 1 cut(s) 485
BstSCI CCNGG 2 cut(s) 483, 1263
BstSFI CTRYAG 1 cut(s) 1842
BstSNI TACGTA 1 cut(s) 1278
BstUI CGCG 1 cut(s) 356
BstV1I GCAGC 6 cut(s) 1340, 1718, 1723, 1727, 1813, 1837
BstV2I GAAGAC 2 cut(s) 938, 1508
BsuI GTATCC 1 cut(s) 1288
BsuRI GGCC 8 cut(s) 353, 394, 887, 947, 998, 1369, 1805, 1964
BtgI CCRYGG 1 cut(s) 888
BtsIMutI CAGTG 2 cut(s) 1806, 1863
BveI ACCTGC 3 cut(s) 1808, 1849, 1945
Cac8I GCNNGC 6 cut(s) 155, 392, 490, 551, 1097, 1803
CaiI CAGNNNCTG 1 cut(s) 1850
CciI TCATGA 1 cut(s) 864
CfoI GCGC 2 cut(s) 358, 712
Cfr10I RCCGGY 1 cut(s) 390
Cfr13I GGNCC 2 cut(s) 393, 715
CseI GACGC 2 cut(s) 146, 602
Csp6I GTAC 2 cut(s) 1261, 1336
CviAII CATG 3 cut(s) 865, 889, 1555
CviQI GTAC 2 cut(s) 1261, 1336
DpnI GATC 1 cut(s) 587
DpnII GATC 1 cut(s) 585
DriI GACNNNNNGTC 2 cut(s) 460, 1168
Eam1104I CTCTTC 2 cut(s) 190, 1881
Eam1105I GACNNNNNGTC 2 cut(s) 460, 1168
EarI CTCTTC 2 cut(s) 190, 1881
EciI GGCGGA 2 cut(s) 320, 1097
Ecl136II GAGCTC 1 cut(s) 679
Eco105I TACGTA 1 cut(s) 1278
Eco130I CCWWGG 3 cut(s) 699, 888, 924
Eco147I AGGCCT 1 cut(s) 998
Eco24I GRGCYC 2 cut(s) 177, 681
Eco47I GGWCC 1 cut(s) 715
Eco53kI GAGCTC 1 cut(s) 679
Eco57I CTGAAG 1 cut(s) 1701
Eco88I CYCGRG 1 cut(s) 344
EcoICRI GAGCTC 1 cut(s) 679
EcoNI CCTNNNNNAGG 1 cut(s) 347
EcoRI GAATTC 1 cut(s) 757
EcoRII CCWGG 1 cut(s) 483
EcoT14I CCWWGG 3 cut(s) 699, 888, 924
EcoT38I GRGCYC 2 cut(s) 177, 681
ErhI CCWWGG 3 cut(s) 699, 888, 924
FaeI CATG 3 cut(s) 868, 892, 1558
FaqI GGGAC 1 cut(s) 448
FatI CATG 3 cut(s) 864, 888, 1554
FauI CCCGC 2 cut(s) 481, 1044
FbaI TGATCA 1 cut(s) 585
FblI GTMKAC 1 cut(s) 1796
FriOI GRGCYC 2 cut(s) 177, 681
FspBI CTAG 1 cut(s) 44
GlaI GCGC 2 cut(s) 357, 711
HaeIII GGCC 8 cut(s) 353, 394, 887, 947, 998, 1369, 1805, 1964
HapII CCGG 5 cut(s) 288, 391, 713, 1160, 1265
HgaI GACGC 2 cut(s) 146, 602
HhaI GCGC 2 cut(s) 358, 712
Hin1I GRCGYC 1 cut(s) 594
Hin1II CATG 3 cut(s) 868, 892, 1558
Hin6I GCGC 2 cut(s) 356, 710
HinP1I GCGC 2 cut(s) 356, 710
HincII GTYRAC 1 cut(s) 412
HindII GTYRAC 1 cut(s) 412
HinfI GANTC 4 cut(s) 764, 905, 1781, 1928
HpaII CCGG 5 cut(s) 288, 391, 713, 1160, 1265
HphI GGTGA 6 cut(s) 23, 461, 472, 940, 1468, 1832
Hpy166II GTNNAC 3 cut(s) 412, 1261, 1797
Hpy188I TCNGA 8 cut(s) 454, 531, 627, 763, 769, 1482, 1786, 1923
Hpy188III TCNNGA 5 cut(s) 865, 1132, 1160, 1468, 1883
Hpy8I GTNNAC 3 cut(s) 412, 1261, 1797
Hpy99I CGWCG 4 cut(s) 147, 150, 153, 162
HpyCH4III ACNGT 2 cut(s) 409, 1858
HpyCH4IV ACGT 2 cut(s) 142, 1277
HpyCH4V TGCA 9 cut(s) 1099, 1200, 1328, 1594, 1730, 1817, 1844, 1871, 1946
HpySE526I ACGT 2 cut(s) 142, 1277
Hsp92I GRCGYC 1 cut(s) 594
Hsp92II CATG 3 cut(s) 868, 892, 1558
HspAI GCGC 2 cut(s) 356, 710
Kpn2I TCCGGA 1 cut(s) 1159
KroI GCCGGC 1 cut(s) 390
KroNI GCCGGC 1 cut(s) 392
Ksp22I TGATCA 1 cut(s) 585
Kzo9I GATC 1 cut(s) 585
LguI GCTCTTC 1 cut(s) 1881
LmnI GCTCC 4 cut(s) 676, 1065, 1228, 1612
Lsp1109I GCAGC 6 cut(s) 1340, 1718, 1723, 1727, 1813, 1837
LweI GCATC 7 cut(s) 177, 685, 955, 1200, 1315, 1345, 1858
MaeI CTAG 1 cut(s) 44
MaeII ACGT 2 cut(s) 142, 1277
MalI GATC 1 cut(s) 587
MboI GATC 1 cut(s) 585
MfeI CAATTG 2 cut(s) 385, 1193
MhlI GDGCHC 2 cut(s) 177, 681
MmeI TCCRAC 1 cut(s) 1539
MroI TCCGGA 1 cut(s) 1159
MroNI GCCGGC 1 cut(s) 390
MseI TTAA 7 cut(s) 1071, 1110, 1406, 1410, 1539, 1581, 1605
MspA1I CMGCKG 1 cut(s) 1331
MspI CCGG 5 cut(s) 288, 391, 713, 1160, 1265
MspR9I CCNGG 2 cut(s) 485, 1265
MunI CAATTG 2 cut(s) 385, 1193
Mva1269I GAATGC 1 cut(s) 315
MvaI CCWGG 1 cut(s) 485
MvnI CGCG 1 cut(s) 356
NaeI GCCGGC 1 cut(s) 392
NciI CCSGG 1 cut(s) 1265
NcoI CCATGG 1 cut(s) 888
NdeII GATC 1 cut(s) 585
NgoMIV GCCGGC 1 cut(s) 390
NlaIII CATG 3 cut(s) 868, 892, 1558
NlaIV GGNNCC 1 cut(s) 717
NmeAIII GCCGAG 1 cut(s) 1065
PacI TTAATTAA 1 cut(s) 1410
PaeR7I CTCGAG 1 cut(s) 344
PagI TCATGA 1 cut(s) 864
PaqCI CACCTGC 1 cut(s) 1808
PceI AGGCCT 1 cut(s) 998
PciSI GCTCTTC 1 cut(s) 1881
PcsI WCGNNNNNNNCGW 1 cut(s) 154
PctI GAATGC 1 cut(s) 315
PdiI GCCGGC 1 cut(s) 392
PfeI GAWTC 4 cut(s) 764, 905, 1781, 1928
PflFI GACNNNGTC 1 cut(s) 1792
Ppu21I YACGTR 1 cut(s) 1278
PshBI ATTAAT 1 cut(s) 1406
PsiI TTATAA 2 cut(s) 1386, 1496
Psp124BI GAGCTC 1 cut(s) 681
Psp6I CCWGG 1 cut(s) 483
PspGI CCWGG 1 cut(s) 483
PspN4I GGNNCC 1 cut(s) 717
PspPI GGNCC 2 cut(s) 393, 715
PspXI VCTCGAGB 1 cut(s) 344
PstI CTGCAG 1 cut(s) 1846
PstNI CAGNNNCTG 1 cut(s) 1850
PsyI GACNNNGTC 1 cut(s) 1792
PvuII CAGCTG 1 cut(s) 1331
RsaI GTAC 2 cut(s) 1262, 1337
RsaNI GTAC 2 cut(s) 1261, 1336
SacI GAGCTC 1 cut(s) 681
SapI GCTCTTC 1 cut(s) 1881
SaqAI TTAA 7 cut(s) 1071, 1110, 1406, 1410, 1539, 1581, 1605
Sau3AI GATC 1 cut(s) 585
Sau96I GGNCC 2 cut(s) 393, 715
ScaI AGTACT 1 cut(s) 1337
ScrFI CCNGG 2 cut(s) 485, 1265
SduI GDGCHC 2 cut(s) 177, 681
SfaNI GCATC 7 cut(s) 177, 685, 955, 1200, 1315, 1345, 1858
SfcI CTRYAG 1 cut(s) 1842
Sfr274I CTCGAG 1 cut(s) 344
SinI GGWCC 1 cut(s) 715
SlaI CTCGAG 1 cut(s) 344
SmlI CTYRAG 4 cut(s) 344, 970, 1000, 1466
SmoI CTYRAG 4 cut(s) 344, 970, 1000, 1466
SnaBI TACGTA 1 cut(s) 1278
SseBI AGGCCT 1 cut(s) 998
SspMI CTAG 1 cut(s) 44
SstI GAGCTC 1 cut(s) 681
StuI AGGCCT 1 cut(s) 998
StyD4I CCNGG 2 cut(s) 483, 1263
StyI CCWWGG 3 cut(s) 699, 888, 924
TaaI ACNGT 2 cut(s) 409, 1858
TaiI ACGT 2 cut(s) 145, 1280
TaqI TCGA 5 cut(s) 100, 171, 345, 1548, 1832
TatI WGTACW 1 cut(s) 1335
TauI GCSGC 4 cut(s) 134, 137, 356, 549
TfiI GAWTC 4 cut(s) 764, 905, 1781, 1928
Tru1I TTAA 7 cut(s) 1071, 1110, 1406, 1410, 1539, 1581, 1605
Tru9I TTAA 7 cut(s) 1071, 1110, 1406, 1410, 1539, 1581, 1605
TscAI CASTG 2 cut(s) 1813, 1863
TseI GCWGC 6 cut(s) 1328, 1706, 1715, 1736, 1826, 1850
TspDTI ATGAA 7 cut(s) 79, 466, 853, 866, 1284, 1514, 1653
TspRI CASTG 2 cut(s) 1813, 1863
Tth111I GACNNNGTC 1 cut(s) 1792
VpaK11BI GGWCC 1 cut(s) 715
VspI ATTAAT 1 cut(s) 1406
XagI CCTNNNNNAGG 1 cut(s) 347
XapI RAATTY 5 cut(s) 757, 1057, 1271, 1577, 1912
XhoI CTCGAG 1 cut(s) 344
XmiI GTMKAC 1 cut(s) 1796
XspI CTAG 1 cut(s) 44
ZrmI AGTACT 1 cut(s) 1337
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.