Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0020141.1

Orthogroup ID

OG0007142

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 471

Gene Structure 470 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0020141.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 470 bp

atggagaaggaggcaatggagtgttatgaacaggcttcgaaggtgaagatgaatgcggtggcgtataactcggtgttggaggcgttgtgtgagtatgggaagtttgatgaggcgttgaagttgtttgataggatgagggaggagcattccccgcctaggaggttcacggtgaatttggggagctttaatgtgatggcggacgggtattgtgcgcaggggaggtttaaggaggcggttgaggtttttaggaagatgggggagtatagatgtgacccggatacgttgtcgtttaataatttgattcagcatttgtgtagcaatgggatgctgagtgaggctgaggaggtttatggggagatgggggagaagggggtgaacccggatgagtacacttactcgttgttgatggatacttgttttgaggagaataggcctgatgatgcggctgagtattttaggaaaatggtgga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000166 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006349 GO:0006725 GO:0006807 GO:0007275 GO:0008144 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009960 GO:0009987 GO:0010154 GO:0010468 GO:0016070 GO:0016787 GO:0016788 GO:0017076 GO:0019222 GO:0022414 GO:0030554 GO:0032501 GO:0032502 GO:0032553 GO:0032555 GO:0032559 GO:0034641 GO:0035639 GO:0036094 GO:0040029 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0060255 GO:0061458 GO:0065007 GO:0071514 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:0097367 GO:1901265 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

156

Amino Acids

18.04

Weight (kDa)

4.64

Isoelectric Point (pI)

23.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007142)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49240
fragaria_vesca	FvH4_2g09580
malus_domestica	MD07G1288700.v1.1
prunus_persica	Prupe.2G310200_v2.0.a1
pyrus_communis	pycom01g22880
rosa_chinensis	RchiOBHm_Chr1g0380631
rosa_laevigata	RLG00000026280
rosa_multiflora	Rmu_sc0004647.1_g000010 Rmu_sc0020141.1_g000001 Rmu_sc0020141.1_g000002 Rmu_sc0021483.1_g000003 Rmu_ssc0000015.1_g000013
rosa_roxburghii	Rroxscaffold_4G00279120
rosa_rugosa	Rorug01G0122900 Rorug01G0423100
rosa_samantha	Rh1AG447400 Rh1BG113000 Rh1BG151000 Rh1BG402900 Rh1CG417300 Rh1DG182800 Rh1DG433200 Rh7CG247500
rosa_wichuraiana	Rw1G038940 Rw7G019950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	213
AciI	CCGC	5 cut(s)	56, 152, 197, 233, 443
AcsI	RAATTY	1 cut(s)	172
AfaI	GTAC	1 cut(s)	389
AfiI	CCNNNNNNNGG	1 cut(s)	156
AgsI	TTSAA	1 cut(s)	118
AluBI	AGCT	1 cut(s)	183
AluI	AGCT	1 cut(s)	183
AoxI	GGCC	1 cut(s)	431
ApoI	RAATTY	1 cut(s)	172
AspA2I	CCTAGG	1 cut(s)	155
AspLEI	GCGC	1 cut(s)	214
AsuC2I	CCSGG	2 cut(s)	275, 380
AsuHPI	GGTGA	3 cut(s)	55, 181, 385
AsuII	TTCGAA	1 cut(s)	38
AvrII	CCTAGG	1 cut(s)	155
BbvCI	CCTCAGC	1 cut(s)	339
BccI	CCATC	4 cut(s)	187, 247, 352, 400
BciVI	GTATCC	2 cut(s)	271, 403
BcnI	CCSGG	2 cut(s)	275, 380
BfaI	CTAG	1 cut(s)	156
BfuI	GTATCC	2 cut(s)	271, 403
BisI	GCNGC	1 cut(s)	444
BlnI	CCTAGG	1 cut(s)	155
BlsI	GCNGC	1 cut(s)	445
Bme1390I	CCNGG	2 cut(s)	275, 380
BmrFI	CCNGG	2 cut(s)	275, 380
BmsI	GCATC	2 cut(s)	315, 430
Bpu10I	CCTNAGC	1 cut(s)	339
Bpu14I	TTCGAA	1 cut(s)	38
BpuMI	CCSGG	2 cut(s)	275, 380
BsaJI	CCNNGG	1 cut(s)	155
BsaXI	ACNNNNNCTCC	2 cut(s)	71, 101
Bsc4I	CCNNNNNNNGG	1 cut(s)	156
Bse3DI	GCAATG	2 cut(s)	21, 325
BseDI	CCNNGG	1 cut(s)	155
BseGI	GGATG	3 cut(s)	138, 330, 388
BseLI	CCNNNNNNNGG	1 cut(s)	156
BseMI	GCAATG	2 cut(s)	21, 325
BseMII	CTCAG	3 cut(s)	320, 330, 438
BseRI	GAGGAG	3 cut(s)	155, 356, 437
BshFI	GGCC	1 cut(s)	433
BsiSI	CCGG	2 cut(s)	275, 380
BslI	CCNNNNNNNGG	1 cut(s)	156
BsmI	GAATGC	2 cut(s)	58, 145
BsnI	GGCC	1 cut(s)	433
Bsp119I	TTCGAA	1 cut(s)	38
BspACI	CCGC	5 cut(s)	56, 152, 197, 233, 443
BspANI	GGCC	1 cut(s)	433
BspCNI	CTCAG	3 cut(s)	321, 331, 439
BspT104I	TTCGAA	1 cut(s)	38
BsrDI	GCAATG	2 cut(s)	21, 325
BssECI	CCNNGG	1 cut(s)	155
BssT1I	CCWWGG	1 cut(s)	155
Bst4CI	ACNGT	1 cut(s)	169
BstBI	TTCGAA	1 cut(s)	38
BstDEI	CTNAG	3 cut(s)	329, 339, 447
BstF5I	GGATG	3 cut(s)	138, 330, 388
BstHHI	GCGC	1 cut(s)	214
BstMWI	GCNNNNNNNGC	1 cut(s)	151
BstSCI	CCNGG	2 cut(s)	273, 378
BsuI	GTATCC	2 cut(s)	271, 403
BsuRI	GGCC	1 cut(s)	433
BtsCI	GGATG	3 cut(s)	138, 330, 388
CfoI	GCGC	1 cut(s)	214
Csp6I	GTAC	1 cut(s)	388
CviJI	RGCY	5 cut(s)	35, 183, 338, 433, 446
CviKI_1	RGCY	5 cut(s)	35, 183, 338, 433, 446
CviQI	GTAC	1 cut(s)	388
DdeI	CTNAG	3 cut(s)	329, 339, 447
EciI	GGCGGA	1 cut(s)	212
Eco130I	CCWWGG	1 cut(s)	155
Eco147I	AGGCCT	1 cut(s)	433
EcoT14I	CCWWGG	1 cut(s)	155
ErhI	CCWWGG	1 cut(s)	155
FaiI	YATR	5 cut(s)	27, 66, 96, 264, 351
FauI	CCCGC	1 cut(s)	159
Fnu4HI	GCNGC	1 cut(s)	444
FokI	GGATG	3 cut(s)	145, 337, 395
Fsp4HI	GCNGC	1 cut(s)	444
FspBI	CTAG	1 cut(s)	156
FspI	TGCGCA	1 cut(s)	213
GlaI	GCGC	1 cut(s)	213
GluI	GCNGC	1 cut(s)	444
HaeIII	GGCC	1 cut(s)	433
HapII	CCGG	2 cut(s)	275, 380
HhaI	GCGC	1 cut(s)	214
Hin6I	GCGC	1 cut(s)	212
HinP1I	GCGC	1 cut(s)	212
HinfI	GANTC	1 cut(s)	301
HpaII	CCGG	2 cut(s)	275, 380
HphI	GGTGA	3 cut(s)	55, 181, 385
Hpy166II	GTNNAC	3 cut(s)	165, 376, 390
Hpy8I	GTNNAC	3 cut(s)	165, 376, 390
HpyAV	CCTTC	2 cut(s)	34, 361
HpyCH4III	ACNGT	1 cut(s)	169
HpyCH4IV	ACGT	1 cut(s)	281
HpyF10VI	GCNNNNNNNGC	1 cut(s)	151
HpyF3I	CTNAG	3 cut(s)	329, 339, 447
HpySE526I	ACGT	1 cut(s)	281
HspAI	GCGC	1 cut(s)	212
LmnI	GCTCC	2 cut(s)	142, 180
LpnPI	CCDG	5 cut(s)	17, 200, 288, 393, 447
LweI	GCATC	2 cut(s)	315, 430
MaeI	CTAG	1 cut(s)	156
MaeII	ACGT	1 cut(s)	281
MaeIII	GTNAC	1 cut(s)	269
MboII	GAAGA	2 cut(s)	58, 262
MluCI	AATT	2 cut(s)	172, 295
MmeI	TCCRAC	1 cut(s)	57
MseI	TTAA	3 cut(s)	186, 225, 291
MspI	CCGG	2 cut(s)	275, 380
MspR9I	CCNGG	2 cut(s)	275, 380
Mva1269I	GAATGC	2 cut(s)	58, 145
MwoI	GCNNNNNNNGC	1 cut(s)	151
NciI	CCSGG	2 cut(s)	275, 380
NmuCI	GTSAC	1 cut(s)	269
NsbI	TGCGCA	1 cut(s)	213
NspV	TTCGAA	1 cut(s)	38
PceI	AGGCCT	1 cut(s)	433
PctI	GAATGC	2 cut(s)	58, 145
PfeI	GAWTC	1 cut(s)	301
PkrI	GCNGC	1 cut(s)	445
RsaI	GTAC	1 cut(s)	389
RsaNI	GTAC	1 cut(s)	388
SaqAI	TTAA	3 cut(s)	186, 225, 291
SatI	GCNGC	1 cut(s)	444
ScrFI	CCNGG	2 cut(s)	275, 380
SetI	ASST	7 cut(s)	45, 164, 185, 224, 243, 284, 348
SfaNI	GCATC	2 cut(s)	315, 430
SfuI	TTCGAA	1 cut(s)	38
Sse9I	AATT	2 cut(s)	172, 295
SseBI	AGGCCT	1 cut(s)	433
SsiI	CCGC	5 cut(s)	56, 152, 197, 233, 443
SspMI	CTAG	1 cut(s)	156
StuI	AGGCCT	1 cut(s)	433
StyD4I	CCNGG	2 cut(s)	273, 378
StyI	CCWWGG	1 cut(s)	155
TaaI	ACNGT	1 cut(s)	169
TaiI	ACGT	1 cut(s)	284
TaqI	TCGA	1 cut(s)	38
TasI	AATT	2 cut(s)	172, 295
TatI	WGTACW	1 cut(s)	387
TauI	GCSGC	1 cut(s)	446
TfiI	GAWTC	1 cut(s)	301
Tru1I	TTAA	3 cut(s)	186, 225, 291
Tru9I	TTAA	3 cut(s)	186, 225, 291
TseFI	GTSAC	1 cut(s)	269
Tsp45I	GTSAC	1 cut(s)	269
TspDTI	ATGAA	2 cut(s)	42, 65
XapI	RAATTY	1 cut(s)	172
XmaJI	CCTAGG	1 cut(s)	155
XspI	CTAG	1 cut(s)	156

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.