Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005695

Physical Location & Seq

Genomic Coordinates Forward (+)

18393747 .. 18397050

Gene Structure 3304 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G49620.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1074 bp

ATGGTAATATATCATCGCAAAGTAGTCTTTACGTACGTAAGAGCAAAGCGTTTCTATCATTTCCTTAATATTGAAATGGTGACAGACTTCAAATCCCTACTACCAGTTATCGACATCAGTCCTTTACTGGCCAAATGTGATGATTTCGACATGGCTGAGGATGCGGGGGTTGTGGAAGTAGTCGGAAAACTGGACAGGGCATGTCGGGACGTCGGATTCTTCTACGTGATTGGTCATGGAATATCGGATGATCTTATAAATAAGGTGAAAGAGATGACGCATCAGTTCTTCGAGCTTCCTTACGAGGAGAAACTTAAGATCAAGATTACTCCAACTGCTGGATACAGAGGATACCAAAGAATTGGAGTAAATTTTACGAGTGGGAAACAAGATATGCACGAAGCCATTGATTGTTACAGAGAGTTCAAGCAAGGGAAACATGGGGACATCGGAAAGGTCTTGGAAGGGCCAAACCAGTGGCCAGGAAATCCTCAAGAGTACAAAGATTTAATGGAGAAGTATATTAAGCTGTGCACAGATCTTTCTAGAAATATCTTAAGGGGAATCTCATTAGCCCTTGGTGGATCACCTTATGAGTTTGAGGGAAAGATGCTTAGAGACCCTTTTTGGGTAATGCGTATCATTGGTTATCCAGGTGTAAACCAAGAAAATGTTATTGGATGTGGAGCTCACACTGACTATGGCTTGTTGACGCTTATAAATCAAGATGATGATAAAACTGCTCTTCAGGTGAAAAACGTGGACGGTGATTGGATACCAGCTATTCCGATCCCTGGATCATTTATCTGCAACATCGGTGACATGTTAACGATACTATCAAACGGAGTTTACCAATCCACACTACATAAAGTAATCAATAACTCTCCTAAATACCGTGTATGTGTTGCATTTTTCTACGAGACTAACTTCGAGGCGGAGGTAGAGCCACTTGATATCTTTAAAGAGAAGCATCCACGAAAAGAAACATCTCAAGTTGCCAAAAGAGTCGTCTATGGACAGCATCTGATTAACAAAGTCCTGACAACCTTTGCAAATTTAGTGGAAAACAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006950 GO:0007154 GO:0008150 GO:0009267 GO:0009605 GO:0009987 GO:0009991 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0042594 GO:0050896 GO:0051716 GO:0071496

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

357

Amino Acids

40.7

Weight (kDa)

6.22

Isoelectric Point (pI)

28.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	34 - 162	1.2e-31	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	212 - 307	1.7e-20	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005695)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49620 AT3G49630 AT3G49630 AT3G49630 AT3G50210 AT3G50210 AT3G50210 AT3G50210
fragaria_vesca	FvH4_1g16460 FvH4_1g16460 FvH4_1g16460 FvH4_1g16460
malus_domestica	MD02G1177200.v1.1
prunus_persica	Prupe.6G230800_v2.0.a1 Prupe.6G230800_v2.0.a1
pyrus_communis	pycom02g14320
rosa_chinensis	RchiOBHm_Chr2g0106331 RchiOBHm_Chr2g0106341
rosa_laevigata	RLG00000017490
rosa_multiflora	Rmu_sc0010122.1_g000005
rosa_roxburghii	Rroxscaffold_2G00137270
rosa_rugosa	Rorug02G0134700 Rorug02G0134800
rosa_samantha	Rh2AG185900 Rh2BG196100 Rh2CG190900 Rh2DG192000
rosa_wichuraiana	Rw2G014490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	257, 719
AatII	GACGTC	1 cut(s)	213
AccB7I	CCANNNNNTGG	1 cut(s)	338
AciI	CCGC	2 cut(s)	164, 935
AclWI	GGATC	3 cut(s)	592, 784, 805
AcoI	YGGCCR	2 cut(s)	129, 479
AcsI	RAATTY	2 cut(s)	370, 1054
AcuI	CTGAAG	1 cut(s)	731
AcyI	GRCGYC	1 cut(s)	210
AfaI	GTAC	2 cut(s)	35, 500
AfiI	CCNNNNNNNGG	3 cut(s)	338, 628, 794
AflII	CTTAAG	2 cut(s)	314, 556
AflIII	ACRYGT	1 cut(s)	822
AgsI	TTSAA	3 cut(s)	74, 91, 427
AjnI	CCWGG	3 cut(s)	481, 652, 793
AjuI	GAANNNNNNNTTGG	2 cut(s)	660, 692
AluBI	AGCT	4 cut(s)	295, 529, 689, 782
AluI	AGCT	4 cut(s)	295, 529, 689, 782
Alw21I	GWGCWC	2 cut(s)	536, 691
Alw26I	GTCTC	2 cut(s)	612, 914
Alw44I	GTGCAC	1 cut(s)	532
AlwI	GGATC	3 cut(s)	592, 784, 805
AlwNI	CAGNNNCTG	1 cut(s)	1024
AoxI	GGCC	3 cut(s)	129, 467, 479
ApaLI	GTGCAC	1 cut(s)	532
ApoI	RAATTY	2 cut(s)	370, 1054
ArsI	GACNNNNNNTTYG	2 cut(s)	993, 1025
AspS9I	GGNCC	1 cut(s)	467
AsuHPI	GGTGA	6 cut(s)	91, 277, 579, 763, 779, 830
BaeGI	GKGCMC	1 cut(s)	536
BalI	TGGCCA	2 cut(s)	131, 481
BanII	GRGCYC	1 cut(s)	691
Bbv12I	GWGCWC	2 cut(s)	536, 691
BbvCI	CCTCAGC	1 cut(s)	156
BciT130I	CCWGG	3 cut(s)	483, 654, 795
BciVI	GTATCC	3 cut(s)	335, 344, 768
BcoDI	GTCTC	2 cut(s)	612, 914
BfaI	CTAG	1 cut(s)	546
BfrI	CTTAAG	2 cut(s)	314, 556
BfuI	GTATCC	3 cut(s)	335, 344, 768
BglII	AGATCT	1 cut(s)	538
Bme1390I	CCNGG	3 cut(s)	483, 654, 795
BmgT120I	GGNCC	1 cut(s)	467
BmrFI	CCNGG	3 cut(s)	483, 654, 795
BmsI	GCATC	5 cut(s)	151, 289, 600, 979, 1030
BoxI	GACNNNNGTC	1 cut(s)	117
Bpu10I	CCTNAGC	1 cut(s)	156
BpuEI	CTTGAG	2 cut(s)	477, 975
BsaAI	YACGTR	3 cut(s)	33, 37, 226
BsaHI	GRCGYC	1 cut(s)	210
BsaI	GGTCTC	1 cut(s)	612
BsaJI	CCNNGG	2 cut(s)	577, 793
Bsc4I	CCNNNNNNNGG	3 cut(s)	338, 628, 794
Bse1I	ACTGG	4 cut(s)	104, 132, 195, 475
BseBI	CCWGG	3 cut(s)	483, 654, 795
BseDI	CCNNGG	2 cut(s)	577, 793
BseGI	GGATG	4 cut(s)	166, 253, 686, 970
BseLI	CCNNNNNNNGG	3 cut(s)	338, 628, 794
BseMII	CTCAG	1 cut(s)	147
BseNI	ACTGG	4 cut(s)	104, 132, 195, 475
BseRI	GAGGAG	1 cut(s)	320
BseSI	GKGCMC	1 cut(s)	536
BshFI	GGCC	3 cut(s)	131, 469, 481
BsiHKAI	GWGCWC	2 cut(s)	536, 691
BsiWI	CGTACG	1 cut(s)	33
BslFI	GGGAC	2 cut(s)	221, 458
BslI	CCNNNNNNNGG	3 cut(s)	338, 628, 794
BsmAI	GTCTC	2 cut(s)	612, 914
BsmFI	GGGAC	2 cut(s)	221, 458
BsnI	GGCC	3 cut(s)	131, 469, 481
Bso31I	GGTCTC	1 cut(s)	612
Bsp1286I	GDGCHC	2 cut(s)	536, 691
Bsp143I	GATC	6 cut(s)	250, 318, 538, 584, 789, 797
BspACI	CCGC	2 cut(s)	164, 935
BspANI	GGCC	3 cut(s)	131, 469, 481
BspCNI	CTCAG	1 cut(s)	148
BspPI	GGATC	3 cut(s)	592, 784, 805
BspQI	GCTCTTC	1 cut(s)	750
BspTI	CTTAAG	2 cut(s)	314, 556
BspTNI	GGTCTC	1 cut(s)	612
BsrI	ACTGG	4 cut(s)	104, 132, 195, 475
BssECI	CCNNGG	2 cut(s)	577, 793
BssMI	GATC	6 cut(s)	250, 318, 538, 584, 789, 797
BssNI	GRCGYC	1 cut(s)	210
BssT1I	CCWWGG	1 cut(s)	577
Bst2UI	CCWGG	3 cut(s)	483, 654, 795
Bst4CI	ACNGT	3 cut(s)	767, 896, 1070
Bst6I	CTCTTC	1 cut(s)	750
BstACI	GRCGYC	1 cut(s)	210
BstAFI	CTTAAG	2 cut(s)	314, 556
BstBAI	YACGTR	3 cut(s)	33, 37, 226
BstDEI	CTNAG	2 cut(s)	156, 614
BstF5I	GGATG	4 cut(s)	166, 253, 686, 970
BstKTI	GATC	6 cut(s)	253, 321, 541, 587, 792, 800
BstMAI	GTCTC	2 cut(s)	612, 914
BstMBI	GATC	6 cut(s)	250, 318, 538, 584, 789, 797
BstMWI	GCNNNNNNNGC	1 cut(s)	161
BstNI	CCWGG	3 cut(s)	483, 654, 795
BstNSI	RCATGY	2 cut(s)	204, 826
BstPAI	GACNNNNGTC	1 cut(s)	117
BstSCI	CCNGG	3 cut(s)	481, 652, 793
BstSLI	GKGCMC	1 cut(s)	536
BstSNI	TACGTA	2 cut(s)	33, 37
BstX2I	RGATCY	1 cut(s)	538
BstXI	CCANNNNNNTGG	2 cut(s)	362, 477
BstYI	RGATCY	1 cut(s)	538
BsuI	GTATCC	3 cut(s)	335, 344, 768
BsuRI	GGCC	3 cut(s)	131, 469, 481
BtsCI	GGATG	4 cut(s)	166, 253, 686, 970
BtsIMutI	CAGTG	2 cut(s)	482, 693
CaiI	CAGNNNCTG	1 cut(s)	1024
Cfr13I	GGNCC	1 cut(s)	467
CseI	GACGC	2 cut(s)	286, 721
Csp6I	GTAC	2 cut(s)	34, 499
CspCI	CAANNNNNGTGG	1 cut(s)	1041
CviAII	CATG	5 cut(s)	151, 201, 236, 440, 823
CviQI	GTAC	2 cut(s)	34, 499
DdeI	CTNAG	2 cut(s)	156, 614
DpnI	GATC	6 cut(s)	252, 320, 540, 586, 791, 799
DpnII	GATC	6 cut(s)	250, 318, 538, 584, 789, 797
DraI	TTTAAA	1 cut(s)	961
EaeI	YGGCCR	2 cut(s)	129, 479
Eam1104I	CTCTTC	1 cut(s)	750
EarI	CTCTTC	1 cut(s)	750
EciI	GGCGGA	1 cut(s)	950
Ecl136II	GAGCTC	1 cut(s)	689
Eco105I	TACGTA	2 cut(s)	33, 37
Eco130I	CCWWGG	1 cut(s)	577
Eco24I	GRGCYC	1 cut(s)	691
Eco31I	GGTCTC	1 cut(s)	612
Eco32I	GATATC	1 cut(s)	955
Eco53kI	GAGCTC	1 cut(s)	689
Eco57I	CTGAAG	1 cut(s)	731
EcoICRI	GAGCTC	1 cut(s)	689
EcoRII	CCWGG	3 cut(s)	481, 652, 793
EcoRV	GATATC	1 cut(s)	955
EcoT14I	CCWWGG	1 cut(s)	577
EcoT38I	GRGCYC	1 cut(s)	691
ErhI	CCWWGG	1 cut(s)	577
FaeI	CATG	5 cut(s)	154, 204, 239, 443, 826
FaqI	GGGAC	2 cut(s)	221, 458
FatI	CATG	5 cut(s)	150, 200, 235, 439, 822
FauI	CCCGC	1 cut(s)	157
FokI	GGATG	4 cut(s)	173, 260, 693, 957
FriOI	GRGCYC	1 cut(s)	691
FspBI	CTAG	1 cut(s)	546
HaeIII	GGCC	3 cut(s)	131, 469, 481
HgaI	GACGC	2 cut(s)	286, 721
Hin1I	GRCGYC	1 cut(s)	210
Hin1II	CATG	5 cut(s)	154, 204, 239, 443, 826
HincII	GTYRAC	2 cut(s)	711, 828
HindII	GTYRAC	2 cut(s)	711, 828
HinfI	GANTC	3 cut(s)	216, 564, 1005
HpaI	GTTAAC	1 cut(s)	828
HphI	GGTGA	6 cut(s)	91, 277, 579, 763, 779, 830
Hpy166II	GTNNAC	6 cut(s)	534, 661, 711, 763, 828, 850
Hpy188I	TCNGA	6 cut(s)	185, 215, 247, 452, 789, 1026
Hpy188III	TCNNGA	6 cut(s)	206, 322, 494, 546, 725, 1039
Hpy8I	GTNNAC	6 cut(s)	534, 661, 711, 763, 828, 850
Hpy99I	CGWCG	1 cut(s)	215
HpyAV	CCTTC	1 cut(s)	458
HpyCH4III	ACNGT	3 cut(s)	767, 896, 1070
HpyCH4IV	ACGT	5 cut(s)	32, 36, 210, 225, 759
HpyCH4V	TGCA	5 cut(s)	397, 534, 810, 908, 1052
HpyF10VI	GCNNNNNNNGC	1 cut(s)	161
HpyF3I	CTNAG	2 cut(s)	156, 614
HpySE526I	ACGT	5 cut(s)	32, 36, 210, 225, 759
Hsp92I	GRCGYC	1 cut(s)	210
Hsp92II	CATG	5 cut(s)	154, 204, 239, 443, 826
KspAI	GTTAAC	1 cut(s)	828
Kzo9I	GATC	6 cut(s)	250, 318, 538, 584, 789, 797
LguI	GCTCTTC	1 cut(s)	750
LmnI	GCTCC	1 cut(s)	686
LweI	GCATC	5 cut(s)	151, 289, 600, 979, 1030
MaeI	CTAG	1 cut(s)	546
MaeII	ACGT	5 cut(s)	32, 36, 210, 225, 759
MaeIII	GTNAC	3 cut(s)	79, 413, 818
MalI	GATC	6 cut(s)	252, 320, 540, 586, 791, 799
MboI	GATC	6 cut(s)	250, 318, 538, 584, 789, 797
MboII	GAAGA	3 cut(s)	211, 280, 737
MflI	RGATCY	1 cut(s)	538
MhlI	GDGCHC	2 cut(s)	536, 691
MlsI	TGGCCA	2 cut(s)	131, 481
MluCI	AATT	3 cut(s)	360, 370, 1054
MluNI	TGGCCA	2 cut(s)	131, 481
MlyI	GAGTC	1 cut(s)	1014
MmeI	TCCRAC	3 cut(s)	163, 193, 356
MnlI	CCTC	7 cut(s)	151, 298, 341, 501, 595, 925, 931
Mox20I	TGGCCA	2 cut(s)	131, 481
MscI	TGGCCA	2 cut(s)	131, 481
MseI	TTAA	9 cut(s)	66, 315, 509, 525, 557, 827, 960, 1029, 1072
Msp20I	TGGCCA	2 cut(s)	131, 481
MspCI	CTTAAG	2 cut(s)	314, 556
MspR9I	CCNGG	3 cut(s)	483, 654, 795
MvaI	CCWGG	3 cut(s)	483, 654, 795
MwoI	GCNNNNNNNGC	1 cut(s)	161
NdeII	GATC	6 cut(s)	250, 318, 538, 584, 789, 797
NlaIII	CATG	5 cut(s)	154, 204, 239, 443, 826
NmuCI	GTSAC	2 cut(s)	79, 818
NspI	RCATGY	2 cut(s)	204, 826
PciI	ACATGT	1 cut(s)	822
PciSI	GCTCTTC	1 cut(s)	750
PfeI	GAWTC	2 cut(s)	216, 564
Pfl23II	CGTACG	1 cut(s)	33
PflMI	CCANNNNNTGG	1 cut(s)	338
PleI	GAGTC	1 cut(s)	1013
PpsI	GAGTC	1 cut(s)	1013
Ppu21I	YACGTR	3 cut(s)	33, 37, 226
PscI	ACATGT	1 cut(s)	822
PshAI	GACNNNNGTC	1 cut(s)	117
PsiI	TTATAA	2 cut(s)	257, 719
Psp124BI	GAGCTC	1 cut(s)	691
Psp6I	CCWGG	3 cut(s)	481, 652, 793
PspGI	CCWGG	3 cut(s)	481, 652, 793
PspLI	CGTACG	1 cut(s)	33
PspPI	GGNCC	1 cut(s)	467
PstNI	CAGNNNCTG	1 cut(s)	1024
PsuI	RGATCY	1 cut(s)	538
RsaI	GTAC	2 cut(s)	35, 500
RsaNI	GTAC	2 cut(s)	34, 499
SacI	GAGCTC	1 cut(s)	691
SapI	GCTCTTC	1 cut(s)	750
SaqAI	TTAA	9 cut(s)	66, 315, 509, 525, 557, 827, 960, 1029, 1072
Sau3AI	GATC	6 cut(s)	250, 318, 538, 584, 789, 797
Sau96I	GGNCC	1 cut(s)	467
SchI	GAGTC	1 cut(s)	1014
ScrFI	CCNGG	3 cut(s)	483, 654, 795
SduI	GDGCHC	2 cut(s)	536, 691
SfaNI	GCATC	5 cut(s)	151, 289, 600, 979, 1030
SmlI	CTYRAG	4 cut(s)	314, 492, 556, 990
SmoI	CTYRAG	4 cut(s)	314, 492, 556, 990
SnaBI	TACGTA	2 cut(s)	33, 37
Sse9I	AATT	3 cut(s)	360, 370, 1054
SsiI	CCGC	2 cut(s)	164, 935
SspI	AATATT	1 cut(s)	70
SspMI	CTAG	1 cut(s)	546
SstI	GAGCTC	1 cut(s)	691
StyD4I	CCNGG	3 cut(s)	481, 652, 793
StyI	CCWWGG	1 cut(s)	577
TaaI	ACNGT	3 cut(s)	767, 896, 1070
TaiI	ACGT	5 cut(s)	35, 39, 213, 228, 762
TaqI	TCGA	4 cut(s)	111, 147, 291, 930
TasI	AATT	3 cut(s)	360, 370, 1054
TatI	WGTACW	1 cut(s)	498
TfiI	GAWTC	2 cut(s)	216, 564
Tru1I	TTAA	9 cut(s)	66, 315, 509, 525, 557, 827, 960, 1029, 1072
Tru9I	TTAA	9 cut(s)	66, 315, 509, 525, 557, 827, 960, 1029, 1072
TscAI	CASTG	2 cut(s)	482, 700
TseFI	GTSAC	2 cut(s)	79, 818
Tsp45I	GTSAC	2 cut(s)	79, 818
TspGWI	ACGGA	1 cut(s)	858
TspRI	CASTG	2 cut(s)	482, 700
Van91I	CCANNNNNTGG	1 cut(s)	338
Vha464I	CTTAAG	2 cut(s)	314, 556
VneI	GTGCAC	1 cut(s)	532
XapI	RAATTY	2 cut(s)	370, 1054
XbaI	TCTAGA	1 cut(s)	545
XceI	RCATGY	2 cut(s)	204, 826
XspI	CTAG	1 cut(s)	546
ZraI	GACGTC	1 cut(s)	211

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.