Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0010122.1

Orthogroup ID

OG0005695

Physical Location & Seq

Genomic Coordinates Reverse (-)

17034 .. 19577

Gene Structure 2544 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0010122.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1098 bp

atgccccatggtatacaagacaaatcacaacagtcatcatccccactacggcactactccactaagcatctgttgaggttggaactgcaaaactctgagagattatcaatctcaatcgtcacagccatggccactgacttcaagtccatacccataattgatattggtcctcttctggccaagtgtgatgatcccaaaatgggtcaagacccaggtgttgctcatgtagtcaagcaattagatcaagcttgtaaagaagcaggcttcttctatgtgaaaggccatggtgttcctgagactctgttaaaagaggtcaagaatctgacccgcaagttctttgaacttccatatgaggaaaaagccaagatcaagatgactgctgataaaggatacagggggtatcagagaattggggagaatataaccaaaggtgtaccagacatacatgaagcaattgattgctataaagaagtgaaaccaggaatgtacggagatcttggaaaacctatggaaggatgtaaccaatggccaactaatcccccaaacttcaagctactgatggaggaatatatcagcctctgcacagaactttcaaaaaatatcatgcgtggaattgctttagcattgggtggatctccatatgaatttgaaggtcacatggtatctaaagtgttgtcctcttctctctttttcctcattgtgctcgttttgttcgtttggccaaacaacaccagtggagctcacacggattatggtttgctgacactggttaatcaggatgatgatataaatgcacttcaggtgagaaacctgtcgggcgagtggatatcagcacctcctgttcccggcacattcgtctgcaatatcggagacatgctaaagatttactcgaatggtttgtatgagtcaactttgcatcaagttatcaactcttccccgaaatacagggtttgtgtagcatatttctatgagaccaactttgatacagcagtggagcctttggacatttgcaaacagaagacaggtggagctaagaaatttgaaagagctgtatatggagagcatttagtcagcaaggttcaaacaaatttcgtgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006950 GO:0007154 GO:0008150 GO:0009267 GO:0009605 GO:0009987 GO:0009991 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0042594 GO:0050896 GO:0051716 GO:0071496

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

365

Amino Acids

40.81

Weight (kDa)

6.56

Isoelectric Point (pI)

29.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005695)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49620 AT3G49630 AT3G49630 AT3G49630 AT3G50210 AT3G50210 AT3G50210 AT3G50210
fragaria_vesca	FvH4_1g16460 FvH4_1g16460 FvH4_1g16460 FvH4_1g16460
malus_domestica	MD02G1177200.v1.1
prunus_persica	Prupe.6G230800_v2.0.a1 Prupe.6G230800_v2.0.a1
pyrus_communis	pycom02g14320
rosa_chinensis	RchiOBHm_Chr2g0106331 RchiOBHm_Chr2g0106341
rosa_laevigata	RLG00000017490
rosa_multiflora	Rmu_sc0010122.1_g000005
rosa_roxburghii	Rroxscaffold_2G00137270
rosa_rugosa	Rorug02G0134700 Rorug02G0134800
rosa_samantha	Rh2AG185900 Rh2BG196100 Rh2CG190900 Rh2DG192000
rosa_wichuraiana	Rw2G014490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	13
AciI	CCGC	1 cut(s)	328
AclWI	GGATC	2 cut(s)	185, 640
AcoI	YGGCCR	4 cut(s)	129, 177, 527, 719
AcsI	RAATTY	3 cut(s)	644, 1037, 1087
AcuI	CTGAAG	1 cut(s)	782
AfaI	GTAC	2 cut(s)	435, 488
AfiI	CCNNNNNNNGG	4 cut(s)	48, 200, 512, 845
AgsI	TTSAA	7 cut(s)	142, 341, 550, 594, 650, 1043, 1082
AhdI	GACNNNNNGTC	1 cut(s)	142
AjnI	CCWGG	2 cut(s)	211, 478
AluBI	AGCT	5 cut(s)	248, 553, 740, 1031, 1049
AluI	AGCT	5 cut(s)	248, 553, 740, 1031, 1049
Alw21I	GWGCWC	2 cut(s)	705, 742
Alw26I	GTCTC	3 cut(s)	290, 864, 965
AlwI	GGATC	2 cut(s)	185, 640
AlwNI	CAGNNNCTG	1 cut(s)	579
AoxI	GGCC	5 cut(s)	129, 177, 280, 527, 719
ApoI	RAATTY	3 cut(s)	644, 1037, 1087
AspS9I	GGNCC	1 cut(s)	167
AsuC2I	CCSGG	1 cut(s)	846
AsuHPI	GGTGA	1 cut(s)	814
AvaII	GGWCC	1 cut(s)	167
BaeI	ACNNNNGTAYC	2 cut(s)	975, 1008
BalI	TGGCCA	4 cut(s)	131, 179, 529, 721
BanII	GRGCYC	1 cut(s)	742
BbsI	GAAGAC	1 cut(s)	1025
Bbv12I	GWGCWC	2 cut(s)	705, 742
BccI	CCATC	1 cut(s)	553
BceAI	ACGGC	1 cut(s)	65
BciT130I	CCWGG	2 cut(s)	213, 480
BciVI	GTATCC	1 cut(s)	383
BcnI	CCSGG	1 cut(s)	846
BcoDI	GTCTC	3 cut(s)	290, 864, 965
BfuI	GTATCC	1 cut(s)	383
BglII	AGATCT	1 cut(s)	493
Bme1390I	CCNGG	3 cut(s)	213, 480, 846
Bme18I	GGWCC	1 cut(s)	167
BmeRI	GACNNNNNGTC	1 cut(s)	142
BmgT120I	GGNCC	1 cut(s)	167
BmiI	GGNNCC	1 cut(s)	996
BmrFI	CCNGG	3 cut(s)	213, 480, 846
BmsI	GCATC	2 cut(s)	76, 925
BpiI	GAAGAC	1 cut(s)	1025
BpuMI	CCSGG	1 cut(s)	846
BsaI	GGTCTC	1 cut(s)	965
BsaJI	CCNNGG	4 cut(s)	7, 126, 211, 283
Bsc4I	CCNNNNNNNGG	4 cut(s)	48, 200, 512, 845
Bse1I	ACTGG	2 cut(s)	732, 771
BseBI	CCWGG	2 cut(s)	213, 480
BseDI	CCNNGG	4 cut(s)	7, 126, 211, 283
BseGI	GGATG	3 cut(s)	38, 521, 784
BseLI	CCNNNNNNNGG	4 cut(s)	48, 200, 512, 845
BseMII	CTCAG	2 cut(s)	87, 285
BseNI	ACTGG	2 cut(s)	732, 771
BsgI	GTGCAG	1 cut(s)	565
BshFI	GGCC	5 cut(s)	131, 179, 282, 529, 721
BsiHKAI	GWGCWC	2 cut(s)	705, 742
BsiSI	CCGG	1 cut(s)	846
BslI	CCNNNNNNNGG	4 cut(s)	48, 200, 512, 845
BsmAI	GTCTC	3 cut(s)	290, 864, 965
BsnI	GGCC	5 cut(s)	131, 179, 282, 529, 721
Bso31I	GGTCTC	1 cut(s)	965
Bsp1286I	GDGCHC	2 cut(s)	705, 742
Bsp143I	GATC	5 cut(s)	190, 241, 366, 493, 632
Bsp19I	CCATGG	3 cut(s)	7, 126, 283
BspACI	CCGC	1 cut(s)	328
BspANI	GGCC	5 cut(s)	131, 179, 282, 529, 721
BspCNI	CTCAG	2 cut(s)	88, 286
BspLI	GGNNCC	1 cut(s)	996
BspPI	GGATC	2 cut(s)	185, 640
BspTNI	GGTCTC	1 cut(s)	965
BsrI	ACTGG	2 cut(s)	732, 771
BssECI	CCNNGG	4 cut(s)	7, 126, 211, 283
BssMI	GATC	5 cut(s)	190, 241, 366, 493, 632
BssNAI	GTATAC	1 cut(s)	14
BssT1I	CCWWGG	3 cut(s)	7, 126, 283
Bst1107I	GTATAC	1 cut(s)	14
Bst2UI	CCWGG	2 cut(s)	213, 480
Bst4CI	ACNGT	1 cut(s)	33
Bst6I	CTCTTC	3 cut(s)	177, 685, 937
BstC8I	GCNNGC	1 cut(s)	262
BstDEI	CTNAG	4 cut(s)	63, 96, 294, 1032
BstDSI	CCRYGG	3 cut(s)	7, 126, 283
BstENI	CCTNNNNNAGG	1 cut(s)	510
BstF5I	GGATG	3 cut(s)	38, 521, 784
BstKTI	GATC	5 cut(s)	193, 244, 369, 496, 635
BstMAI	GTCTC	3 cut(s)	290, 864, 965
BstMBI	GATC	5 cut(s)	190, 241, 366, 493, 632
BstNI	CCWGG	2 cut(s)	213, 480
BstNSI	RCATGY	1 cut(s)	877
BstSCI	CCNGG	3 cut(s)	211, 478, 844
BstV2I	GAAGAC	1 cut(s)	1025
BstX2I	RGATCY	2 cut(s)	493, 632
BstYI	RGATCY	2 cut(s)	493, 632
BstZ17I	GTATAC	1 cut(s)	14
BsuI	GTATCC	1 cut(s)	383
BsuRI	GGCC	5 cut(s)	131, 179, 282, 529, 721
BtgI	CCRYGG	3 cut(s)	7, 126, 283
BtsCI	GGATG	3 cut(s)	38, 521, 784
BtsI	GCAGTG	1 cut(s)	996
BtsIMutI	CAGTG	4 cut(s)	132, 739, 764, 996
Cac8I	GCNNGC	1 cut(s)	262
CaiI	CAGNNNCTG	1 cut(s)	579
Cfr13I	GGNCC	1 cut(s)	167
Csp6I	GTAC	2 cut(s)	434, 487
CspCI	CAANNNNNGTGG	2 cut(s)	715, 750
CviAII	CATG	8 cut(s)	8, 127, 224, 284, 446, 604, 658, 874
CviQI	GTAC	2 cut(s)	434, 487
DdeI	CTNAG	4 cut(s)	63, 96, 294, 1032
DpnI	GATC	5 cut(s)	192, 243, 368, 495, 634
DpnII	GATC	5 cut(s)	190, 241, 366, 493, 632
DriI	GACNNNNNGTC	1 cut(s)	142
EaeI	YGGCCR	4 cut(s)	129, 177, 527, 719
Eam1104I	CTCTTC	3 cut(s)	177, 685, 937
Eam1105I	GACNNNNNGTC	1 cut(s)	142
EarI	CTCTTC	3 cut(s)	177, 685, 937
Ecl136II	GAGCTC	1 cut(s)	740
Eco130I	CCWWGG	3 cut(s)	7, 126, 283
Eco24I	GRGCYC	1 cut(s)	742
Eco31I	GGTCTC	1 cut(s)	965
Eco32I	GATATC	1 cut(s)	828
Eco47I	GGWCC	1 cut(s)	167
Eco53kI	GAGCTC	1 cut(s)	740
Eco57I	CTGAAG	1 cut(s)	782
EcoICRI	GAGCTC	1 cut(s)	740
EcoNI	CCTNNNNNAGG	1 cut(s)	510
EcoRII	CCWGG	2 cut(s)	211, 478
EcoRV	GATATC	1 cut(s)	828
EcoT14I	CCWWGG	3 cut(s)	7, 126, 283
EcoT38I	GRGCYC	1 cut(s)	742
ErhI	CCWWGG	3 cut(s)	7, 126, 283
FaeI	CATG	8 cut(s)	11, 130, 227, 287, 449, 607, 661, 877
FatI	CATG	8 cut(s)	7, 126, 223, 283, 445, 603, 657, 873
FauI	CCCGC	1 cut(s)	335
FauNDI	CATATG	2 cut(s)	349, 640
FblI	GTMKAC	1 cut(s)	13
FokI	GGATG	3 cut(s)	25, 528, 791
FriOI	GRGCYC	1 cut(s)	742
HaeIII	GGCC	5 cut(s)	131, 179, 282, 529, 721
HapII	CCGG	1 cut(s)	846
Hin1II	CATG	8 cut(s)	11, 130, 227, 287, 449, 607, 661, 877
HincII	GTYRAC	1 cut(s)	909
HindII	GTYRAC	1 cut(s)	909
HindIII	AAGCTT	1 cut(s)	246
HinfI	GANTC	3 cut(s)	298, 319, 905
HpaII	CCGG	1 cut(s)	846
HphI	GGTGA	1 cut(s)	814
Hpy166II	GTNNAC	3 cut(s)	14, 434, 909
Hpy188I	TCNGA	4 cut(s)	97, 324, 405, 869
Hpy188III	TCNNGA	5 cut(s)	206, 293, 316, 370, 776
Hpy8I	GTNNAC	3 cut(s)	14, 434, 909
HpyAV	CCTTC	2 cut(s)	506, 644
HpyCH4III	ACNGT	1 cut(s)	33
HpyCH4V	TGCA	6 cut(s)	88, 582, 794, 861, 916, 1011
HpyF3I	CTNAG	4 cut(s)	63, 96, 294, 1032
Hsp92II	CATG	8 cut(s)	11, 130, 227, 287, 449, 607, 661, 877
Kzo9I	GATC	5 cut(s)	190, 241, 366, 493, 632
LmnI	GCTCC	3 cut(s)	737, 994, 1028
LweI	GCATC	2 cut(s)	76, 925
MaeIII	GTNAC	3 cut(s)	118, 518, 653
MalI	GATC	5 cut(s)	192, 243, 368, 495, 634
MboI	GATC	5 cut(s)	190, 241, 366, 493, 632
MboII	GAAGA	5 cut(s)	164, 259, 672, 924, 1030
MfeI	CAATTG	1 cut(s)	453
MflI	RGATCY	2 cut(s)	493, 632
MhlI	GDGCHC	2 cut(s)	705, 742
MlsI	TGGCCA	4 cut(s)	131, 179, 529, 721
MluCI	AATT	8 cut(s)	156, 236, 408, 453, 612, 644, 1037, 1087
MluNI	TGGCCA	4 cut(s)	131, 179, 529, 721
MlyI	GAGTC	2 cut(s)	292, 914
MmeI	TCCRAC	1 cut(s)	60
MnlI	CCTC	9 cut(s)	69, 180, 304, 346, 556, 587, 688, 704, 846
Mox20I	TGGCCA	4 cut(s)	131, 179, 529, 721
MscI	TGGCCA	4 cut(s)	131, 179, 529, 721
MseI	TTAA	2 cut(s)	305, 771
MslI	CAYNNNNRTG	1 cut(s)	125
Msp20I	TGGCCA	4 cut(s)	131, 179, 529, 721
MspI	CCGG	1 cut(s)	846
MspR9I	CCNGG	3 cut(s)	213, 480, 846
MunI	CAATTG	1 cut(s)	453
MvaI	CCWGG	2 cut(s)	213, 480
NciI	CCSGG	1 cut(s)	846
NcoI	CCATGG	3 cut(s)	7, 126, 283
NdeI	CATATG	2 cut(s)	349, 640
NdeII	GATC	5 cut(s)	190, 241, 366, 493, 632
NlaIII	CATG	8 cut(s)	11, 130, 227, 287, 449, 607, 661, 877
NlaIV	GGNNCC	1 cut(s)	996
NmuCI	GTSAC	2 cut(s)	118, 653
NspI	RCATGY	1 cut(s)	877
PcsI	WCGNNNNNNNCGW	1 cut(s)	711
PfeI	GAWTC	1 cut(s)	319
PleI	GAGTC	2 cut(s)	292, 913
PpsI	GAGTC	2 cut(s)	292, 913
Psp124BI	GAGCTC	1 cut(s)	742
Psp6I	CCWGG	2 cut(s)	211, 478
PspGI	CCWGG	2 cut(s)	211, 478
PspN4I	GGNNCC	1 cut(s)	996
PspPI	GGNCC	1 cut(s)	167
PstNI	CAGNNNCTG	1 cut(s)	579
PsuI	RGATCY	2 cut(s)	493, 632
RsaI	GTAC	2 cut(s)	435, 488
RsaNI	GTAC	2 cut(s)	434, 487
RseI	CAYNNNNRTG	1 cut(s)	125
SacI	GAGCTC	1 cut(s)	742
SaqAI	TTAA	2 cut(s)	305, 771
Sau3AI	GATC	5 cut(s)	190, 241, 366, 493, 632
Sau96I	GGNCC	1 cut(s)	167
SchI	GAGTC	2 cut(s)	292, 914
ScrFI	CCNGG	3 cut(s)	213, 480, 846
SduI	GDGCHC	2 cut(s)	705, 742
SfaNI	GCATC	2 cut(s)	76, 925
SinI	GGWCC	1 cut(s)	167
SmiMI	CAYNNNNRTG	1 cut(s)	125
Sse9I	AATT	8 cut(s)	156, 236, 408, 453, 612, 644, 1037, 1087
SsiI	CCGC	1 cut(s)	328
SstI	GAGCTC	1 cut(s)	742
StyD4I	CCNGG	3 cut(s)	211, 478, 844
StyI	CCWWGG	3 cut(s)	7, 126, 283
TaaI	ACNGT	1 cut(s)	33
TaqI	TCGA	1 cut(s)	890
TasI	AATT	8 cut(s)	156, 236, 408, 453, 612, 644, 1037, 1087
TfiI	GAWTC	1 cut(s)	319
Tru1I	TTAA	2 cut(s)	305, 771
Tru9I	TTAA	2 cut(s)	305, 771
TscAI	CASTG	4 cut(s)	139, 739, 771, 996
TseFI	GTSAC	2 cut(s)	118, 653
Tsp45I	GTSAC	2 cut(s)	118, 653
TspDTI	ATGAA	2 cut(s)	462, 657
TspGWI	ACGGA	2 cut(s)	504, 761
TspRI	CASTG	4 cut(s)	139, 739, 771, 996
VpaK11BI	GGWCC	1 cut(s)	167
XagI	CCTNNNNNAGG	1 cut(s)	510
XapI	RAATTY	3 cut(s)	644, 1037, 1087
XceI	RCATGY	1 cut(s)	877
XmiI	GTMKAC	1 cut(s)	13

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.