Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0005695

Physical Location & Seq

Genomic Coordinates Forward (+)

10917259 .. 10919781

Gene Structure 2523 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g14320.11

Sequence Viewer

CDS Protein Promoter (2k)

Length: 933 bp

ATGATCGATCCAAAAATGGGCCAGGACCCGGATGTTGCTCAAGTTGTCAGACAATTGGATCGAGCTTGTAAAGAAGCTGGCTTTTTCTATGTGAAAGGACATGGTATTCCCAAGACTCTGCTGAAACAAGTCAAGAATCTGACACGCAAGTTTTTTGAGCTTCCATACGAAGAAAAACTCAACATCAAAATGTCTGCTGATAGTGGATTCAGAGGATATCAGAGAATTGGAGAGAATATTACCAAAGGTGTACCTGACATGCATGAGGCTATTGATTGCTATAAAGAATTGAAACCAGGGATGTATGGAGATCTTGGAAAACCAATGGAAGGACCTAACCAATGGCCAGATAATCCCCCAGAATTTAAGGTACTAATGGAGGAATATATCAGCCTTTGCACAGGCCTTTCAAAAAAGATCATGCGTGGAATTGCGTTAGCACTGGGTGGATCACCATATGAATTTGAAGGTGATAGAGCTGGGGATGCATTTTGGGTGATGCGCCTTATTGGTTACCCAGCTGCACGCTCTACAAACGCCTCGGACATTCCAAAAAATGATGTCGGATGTGGAGCTCACACTGATTATGGTTTGTTGACATTGGTTAATCAGGATGACGATATAACTGCTCTTCAGGTGAGAAACCATTCCGGTGAGTGGATATCAGCTCCTCCTGTTCCTGGGACATTTGTCTGCAATATTGGAGACATGCTAAAGATTTACTCAAATGGTTTATACGATTCCACTTTGCATCAAGTTATCAACTCCGCTCCAAAATACCGGGTCTGTGTAGCGTATTTCTATGAGACAAATTTTGATACAGCAGTCGAGCCTTTGGATTTTTGTGTAGAGAAGACAGGTGGAGCTAAGAAATTCGAAAGAGCTCTTTATGGAGAACATTTGGTTAACAAGGTCCAAACAAACTTCGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006950 GO:0007154 GO:0008150 GO:0009267 GO:0009605 GO:0009987 GO:0009991 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0042594 GO:0050896 GO:0051716 GO:0071496

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

311

Amino Acids

34.57

Weight (kDa)

5.76

Isoelectric Point (pI)

24.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005695)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49620 AT3G49630 AT3G49630 AT3G49630 AT3G50210 AT3G50210 AT3G50210 AT3G50210
fragaria_vesca	FvH4_1g16460 FvH4_1g16460 FvH4_1g16460 FvH4_1g16460
malus_domestica	MD02G1177200.v1.1
prunus_persica	Prupe.6G230800_v2.0.a1 Prupe.6G230800_v2.0.a1
pyrus_communis	pycom02g14320
rosa_chinensis	RchiOBHm_Chr2g0106331 RchiOBHm_Chr2g0106341
rosa_laevigata	RLG00000017490
rosa_multiflora	Rmu_sc0010122.1_g000005
rosa_roxburghii	Rroxscaffold_2G00137270
rosa_rugosa	Rorug02G0134700 Rorug02G0134800
rosa_samantha	Rh2AG185900 Rh2BG196100 Rh2CG190900 Rh2DG192000
rosa_wichuraiana	Rw2G014490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	770
AciI	CCGC	1 cut(s)	768
AclWI	GGATC	3 cut(s)	2, 66, 457
AcoI	YGGCCR	1 cut(s)	344
AcsI	RAATTY	4 cut(s)	362, 461, 811, 872
AcuI	CTGAAG	1 cut(s)	617
AdeI	CACNNNGTG	1 cut(s)	446
AfaI	GTAC	2 cut(s)	252, 372
AfiI	CCNNNNNNNGG	5 cut(s)	17, 28, 329, 657, 680
AgsI	TTSAA	3 cut(s)	292, 411, 467
AjnI	CCWGG	3 cut(s)	21, 295, 679
AluBI	AGCT	9 cut(s)	65, 77, 160, 479, 521, 575, 668, 866, 884
AluI	AGCT	9 cut(s)	65, 77, 160, 479, 521, 575, 668, 866, 884
Alw21I	GWGCWC	2 cut(s)	577, 886
Alw26I	GTCTC	2 cut(s)	699, 800
AlwI	GGATC	3 cut(s)	2, 66, 457
AoxI	GGCC	3 cut(s)	19, 344, 403
ApeKI	GCWGC	1 cut(s)	521
ApoI	RAATTY	4 cut(s)	362, 461, 811, 872
Asp700I	GAANNNNTTC	1 cut(s)	646
AspLEI	GCGC	1 cut(s)	504
AspS9I	GGNCC	4 cut(s)	19, 25, 332, 913
AsuC2I	CCSGG	2 cut(s)	29, 782
AsuHPI	GGTGA	5 cut(s)	444, 482, 508, 649, 665
AsuII	TTCGAA	1 cut(s)	876
AvaII	GGWCC	3 cut(s)	25, 332, 913
BaeI	ACNNNNGTAYC	2 cut(s)	810, 843
BalI	TGGCCA	1 cut(s)	346
BanII	GRGCYC	2 cut(s)	577, 886
BbsI	GAAGAC	1 cut(s)	860
Bbv12I	GWGCWC	2 cut(s)	577, 886
BbvI	GCAGC	1 cut(s)	508
BcgI	CGANNNNNNTGC	2 cut(s)	608, 642
BciT130I	CCWGG	3 cut(s)	23, 297, 681
BcnI	CCSGG	2 cut(s)	29, 782
BcoDI	GTCTC	2 cut(s)	699, 800
BglII	AGATCT	1 cut(s)	310
BisI	GCNGC	1 cut(s)	522
BlsI	GCNGC	1 cut(s)	523
Bme1390I	CCNGG	5 cut(s)	23, 29, 297, 681, 782
Bme18I	GGWCC	3 cut(s)	25, 332, 913
BmgT120I	GGNCC	4 cut(s)	19, 25, 332, 913
BmiI	GGNNCC	1 cut(s)	27
BmrFI	CCNGG	5 cut(s)	23, 29, 297, 681, 782
BmrI	ACTGGG	1 cut(s)	452
BmsI	GCATC	3 cut(s)	475, 489, 760
BmuI	ACTGGG	1 cut(s)	452
BoxI	GACNNNNGTC	1 cut(s)	689
BpiI	GAAGAC	1 cut(s)	860
Bpu14I	TTCGAA	1 cut(s)	876
BpuEI	CTTGAG	1 cut(s)	24
BpuMI	CCSGG	2 cut(s)	29, 782
Bsa29I	ATCGAT	1 cut(s)	6
BsaJI	CCNNGG	3 cut(s)	296, 540, 680
BsaWI	WCCGGW	1 cut(s)	650
Bsc4I	CCNNNNNNNGG	5 cut(s)	17, 28, 329, 657, 680
Bse1I	ACTGG	1 cut(s)	447
BseBI	CCWGG	3 cut(s)	23, 297, 681
BseCI	ATCGAT	1 cut(s)	6
BseDI	CCNNGG	3 cut(s)	296, 540, 680
BseGI	GGATG	5 cut(s)	37, 306, 490, 572, 619
BseLI	CCNNNNNNNGG	5 cut(s)	17, 28, 329, 657, 680
BseNI	ACTGG	1 cut(s)	447
BseRI	GAGGAG	1 cut(s)	660
BseXI	GCAGC	1 cut(s)	508
BseYI	CCCAGC	2 cut(s)	479, 517
BsgI	GTGCAG	1 cut(s)	507
BshFI	GGCC	3 cut(s)	21, 346, 405
BshVI	ATCGAT	1 cut(s)	6
BsiHKAI	GWGCWC	2 cut(s)	577, 886
BsiSI	CCGG	3 cut(s)	29, 651, 781
BslFI	GGGAC	1 cut(s)	697
BslI	CCNNNNNNNGG	5 cut(s)	17, 28, 329, 657, 680
BsmAI	GTCTC	2 cut(s)	699, 800
BsmFI	GGGAC	1 cut(s)	697
BsnI	GGCC	3 cut(s)	21, 346, 405
Bsp119I	TTCGAA	1 cut(s)	876
Bsp1286I	GDGCHC	2 cut(s)	577, 886
Bsp143I	GATC	6 cut(s)	3, 7, 58, 310, 417, 449
BspACI	CCGC	1 cut(s)	768
BspANI	GGCC	3 cut(s)	21, 346, 405
BspDI	ATCGAT	1 cut(s)	6
BspLI	GGNNCC	1 cut(s)	27
BspPI	GGATC	3 cut(s)	2, 66, 457
BspQI	GCTCTTC	1 cut(s)	636
BspT104I	TTCGAA	1 cut(s)	876
BsrBI	CCGCTC	1 cut(s)	770
BsrI	ACTGG	1 cut(s)	447
BssECI	CCNNGG	3 cut(s)	296, 540, 680
BssMI	GATC	6 cut(s)	3, 7, 58, 310, 417, 449
Bst2UI	CCWGG	3 cut(s)	23, 297, 681
Bst6I	CTCTTC	1 cut(s)	636
BstBI	TTCGAA	1 cut(s)	876
BstC8I	GCNNGC	2 cut(s)	79, 526
BstDEI	CTNAG	1 cut(s)	867
BstEII	GGTNACC	1 cut(s)	512
BstF5I	GGATG	5 cut(s)	37, 306, 490, 572, 619
BstHHI	GCGC	1 cut(s)	504
BstKTI	GATC	6 cut(s)	6, 10, 61, 313, 420, 452
BstMAI	GTCTC	2 cut(s)	699, 800
BstMBI	GATC	6 cut(s)	3, 7, 58, 310, 417, 449
BstMWI	GCNNNNNNNGC	1 cut(s)	485
BstNI	CCWGG	3 cut(s)	23, 297, 681
BstNSI	RCATGY	2 cut(s)	262, 712
BstPAI	GACNNNNGTC	1 cut(s)	689
BstPI	GGTNACC	1 cut(s)	512
BstSCI	CCNGG	5 cut(s)	21, 27, 295, 679, 780
BstV1I	GCAGC	1 cut(s)	508
BstV2I	GAAGAC	1 cut(s)	860
BstX2I	RGATCY	1 cut(s)	310
BstYI	RGATCY	1 cut(s)	310
Bsu15I	ATCGAT	1 cut(s)	6
BsuRI	GGCC	3 cut(s)	21, 346, 405
BsuTUI	ATCGAT	1 cut(s)	6
BtsCI	GGATG	5 cut(s)	37, 306, 490, 572, 619
BtsIMutI	CAGTG	2 cut(s)	440, 579
Cac8I	GCNNGC	2 cut(s)	79, 526
CfoI	GCGC	1 cut(s)	504
Cfr13I	GGNCC	4 cut(s)	19, 25, 332, 913
ClaI	ATCGAT	1 cut(s)	6
Csp6I	GTAC	2 cut(s)	251, 371
CviAII	CATG	5 cut(s)	101, 259, 263, 421, 709
CviQI	GTAC	2 cut(s)	251, 371
DdeI	CTNAG	1 cut(s)	867
DpnI	GATC	6 cut(s)	5, 9, 60, 312, 419, 451
DpnII	GATC	6 cut(s)	3, 7, 58, 310, 417, 449
DraIII	CACNNNGTG	1 cut(s)	446
EaeI	YGGCCR	1 cut(s)	344
Eam1104I	CTCTTC	1 cut(s)	636
EarI	CTCTTC	1 cut(s)	636
Ecl136II	GAGCTC	2 cut(s)	575, 884
Eco147I	AGGCCT	1 cut(s)	405
Eco24I	GRGCYC	2 cut(s)	577, 886
Eco32I	GATATC	2 cut(s)	218, 663
Eco47I	GGWCC	3 cut(s)	25, 332, 913
Eco53kI	GAGCTC	2 cut(s)	575, 884
Eco57I	CTGAAG	1 cut(s)	617
Eco91I	GGTNACC	1 cut(s)	512
EcoICRI	GAGCTC	2 cut(s)	575, 884
EcoO109I	RGGNCCY	2 cut(s)	25, 332
EcoO65I	GGTNACC	1 cut(s)	512
EcoRII	CCWGG	3 cut(s)	21, 295, 679
EcoRV	GATATC	2 cut(s)	218, 663
EcoT22I	ATGCAT	2 cut(s)	264, 490
EcoT38I	GRGCYC	2 cut(s)	577, 886
FaeI	CATG	5 cut(s)	104, 262, 266, 424, 712
FaqI	GGGAC	1 cut(s)	697
FatI	CATG	5 cut(s)	100, 258, 262, 420, 708
FauNDI	CATATG	1 cut(s)	457
Fnu4HI	GCNGC	1 cut(s)	522
FokI	GGATG	5 cut(s)	44, 313, 497, 579, 626
FriOI	GRGCYC	2 cut(s)	577, 886
Fsp4HI	GCNGC	1 cut(s)	522
GlaI	GCGC	1 cut(s)	503
GluI	GCNGC	1 cut(s)	522
GsaI	CCCAGC	2 cut(s)	483, 521
HaeIII	GGCC	3 cut(s)	21, 346, 405
HapII	CCGG	3 cut(s)	29, 651, 781
HhaI	GCGC	1 cut(s)	504
Hin1II	CATG	5 cut(s)	104, 262, 266, 424, 712
Hin6I	GCGC	1 cut(s)	502
HinP1I	GCGC	1 cut(s)	502
HincII	GTYRAC	2 cut(s)	597, 907
HindII	GTYRAC	2 cut(s)	597, 907
HinfI	GANTC	4 cut(s)	115, 136, 207, 740
HpaI	GTTAAC	1 cut(s)	907
HpaII	CCGG	3 cut(s)	29, 651, 781
HphI	GGTGA	5 cut(s)	444, 482, 508, 649, 665
Hpy166II	GTNNAC	3 cut(s)	251, 597, 907
Hpy188I	TCNGA	6 cut(s)	50, 141, 212, 222, 544, 566
Hpy188III	TCNNGA	2 cut(s)	133, 611
Hpy8I	GTNNAC	3 cut(s)	251, 597, 907
HpyAV	CCTTC	2 cut(s)	323, 461
HpyCH4V	TGCA	6 cut(s)	262, 399, 488, 524, 696, 751
HpyF10VI	GCNNNNNNNGC	1 cut(s)	485
HpyF3I	CTNAG	1 cut(s)	867
Hsp92II	CATG	5 cut(s)	104, 262, 266, 424, 712
HspAI	GCGC	1 cut(s)	502
KspAI	GTTAAC	1 cut(s)	907
Kzo9I	GATC	6 cut(s)	3, 7, 58, 310, 417, 449
LguI	GCTCTTC	1 cut(s)	636
LmnI	GCTCC	4 cut(s)	572, 673, 775, 863
Lsp1109I	GCAGC	1 cut(s)	508
LweI	GCATC	3 cut(s)	475, 489, 760
MaeIII	GTNAC	1 cut(s)	512
MalI	GATC	6 cut(s)	5, 9, 60, 312, 419, 451
MbiI	CCGCTC	1 cut(s)	770
MboI	GATC	6 cut(s)	3, 7, 58, 310, 417, 449
MboII	GAAGA	3 cut(s)	182, 623, 865
MfeI	CAATTG	1 cut(s)	53
MflI	RGATCY	1 cut(s)	310
MhlI	GDGCHC	2 cut(s)	577, 886
MlsI	TGGCCA	1 cut(s)	346
MluCI	AATT	8 cut(s)	53, 225, 287, 362, 429, 461, 811, 872
MluNI	TGGCCA	1 cut(s)	346
MlyI	GAGTC	1 cut(s)	109
MmeI	TCCRAC	1 cut(s)	544
MnlI	CCTC	5 cut(s)	206, 259, 373, 550, 681
Mox20I	TGGCCA	1 cut(s)	346
Mph1103I	ATGCAT	2 cut(s)	264, 490
MroXI	GAANNNNTTC	1 cut(s)	646
MscI	TGGCCA	1 cut(s)	346
MseI	TTAA	4 cut(s)	366, 606, 906, 931
MslI	CAYNNNNRTG	2 cut(s)	188, 651
Msp20I	TGGCCA	1 cut(s)	346
MspA1I	CMGCKG	1 cut(s)	521
MspI	CCGG	3 cut(s)	29, 651, 781
MspR9I	CCNGG	5 cut(s)	23, 29, 297, 681, 782
MunI	CAATTG	1 cut(s)	53
MvaI	CCWGG	3 cut(s)	23, 297, 681
MwoI	GCNNNNNNNGC	1 cut(s)	485
NciI	CCSGG	2 cut(s)	29, 782
NdeI	CATATG	1 cut(s)	457
NdeII	GATC	6 cut(s)	3, 7, 58, 310, 417, 449
NlaIII	CATG	5 cut(s)	104, 262, 266, 424, 712
NlaIV	GGNNCC	1 cut(s)	27
NsiI	ATGCAT	2 cut(s)	264, 490
NspI	RCATGY	2 cut(s)	262, 712
NspV	TTCGAA	1 cut(s)	876
PceI	AGGCCT	1 cut(s)	405
PciSI	GCTCTTC	1 cut(s)	636
PdmI	GAANNNNTTC	1 cut(s)	646
PfeI	GAWTC	3 cut(s)	136, 207, 740
PkrI	GCNGC	1 cut(s)	523
PleI	GAGTC	1 cut(s)	109
PpsI	GAGTC	1 cut(s)	109
PpuMI	RGGWCCY	2 cut(s)	25, 332
PshAI	GACNNNNGTC	1 cut(s)	689
Psp124BI	GAGCTC	2 cut(s)	577, 886
Psp5II	RGGWCCY	2 cut(s)	25, 332
Psp6I	CCWGG	3 cut(s)	21, 295, 679
PspEI	GGTNACC	1 cut(s)	512
PspFI	CCCAGC	2 cut(s)	479, 517
PspGI	CCWGG	3 cut(s)	21, 295, 679
PspN4I	GGNNCC	1 cut(s)	27
PspPI	GGNCC	4 cut(s)	19, 25, 332, 913
PspPPI	RGGWCCY	2 cut(s)	25, 332
PsuI	RGATCY	1 cut(s)	310
PvuII	CAGCTG	1 cut(s)	521
RsaI	GTAC	2 cut(s)	252, 372
RsaNI	GTAC	2 cut(s)	251, 371
RseI	CAYNNNNRTG	2 cut(s)	188, 651
SacI	GAGCTC	2 cut(s)	577, 886
SapI	GCTCTTC	1 cut(s)	636
SaqAI	TTAA	4 cut(s)	366, 606, 906, 931
SatI	GCNGC	1 cut(s)	522
Sau3AI	GATC	6 cut(s)	3, 7, 58, 310, 417, 449
Sau96I	GGNCC	4 cut(s)	19, 25, 332, 913
SchI	GAGTC	1 cut(s)	109
ScrFI	CCNGG	5 cut(s)	23, 29, 297, 681, 782
SduI	GDGCHC	2 cut(s)	577, 886
SfaNI	GCATC	3 cut(s)	475, 489, 760
SfuI	TTCGAA	1 cut(s)	876
SinI	GGWCC	3 cut(s)	25, 332, 913
SmiMI	CAYNNNNRTG	2 cut(s)	188, 651
SmlI	CTYRAG	1 cut(s)	39
SmoI	CTYRAG	1 cut(s)	39
Sse9I	AATT	8 cut(s)	53, 225, 287, 362, 429, 461, 811, 872
SseBI	AGGCCT	1 cut(s)	405
SsiI	CCGC	1 cut(s)	768
SspI	AATATT	2 cut(s)	238, 700
SstI	GAGCTC	2 cut(s)	577, 886
StuI	AGGCCT	1 cut(s)	405
StyD4I	CCNGG	5 cut(s)	21, 27, 295, 679, 780
TaqI	TCGA	4 cut(s)	6, 61, 828, 876
TasI	AATT	8 cut(s)	53, 225, 287, 362, 429, 461, 811, 872
TfiI	GAWTC	3 cut(s)	136, 207, 740
Tru1I	TTAA	4 cut(s)	366, 606, 906, 931
Tru9I	TTAA	4 cut(s)	366, 606, 906, 931
TscAI	CASTG	2 cut(s)	447, 586
TseI	GCWGC	1 cut(s)	521
TspDTI	ATGAA	1 cut(s)	474
TspRI	CASTG	2 cut(s)	447, 586
VpaK11BI	GGWCC	3 cut(s)	25, 332, 913
XapI	RAATTY	4 cut(s)	362, 461, 811, 872
XceI	RCATGY	2 cut(s)	262, 712
XmnI	GAANNNNTTC	1 cut(s)	646
Zsp2I	ATGCAT	2 cut(s)	264, 490

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.