Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0005695

Physical Location & Seq

Genomic Coordinates Forward (+)

17436449 .. 17438860

Gene Structure 2412 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG192000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 963 bp

ATGGCCACTGACTTCAAGTCCATACCCATAATTGATATTGGTCCTCTTCTGGCCAAGTGTGATGATCCCAAAATGGGTCAAGACCCAGGTGTTGCTCATGTAGTCAAGCAATTAGATCAAGCTTGTAAAGAAGCAGGCTTCTTCTATGTGAAAGGCCATGGTGTTCCTGAGACTCTGTTAAAAGAAGTCAAGAATCTGACCCGCAAGTTCTTTGAACTTCCACATGAGGAAAAAGCCAAGATCAAGATGACTGCTGATAAAGGATACAGGGGGTATCAGAGAATTGGGGAGAATATAACCAAAGGTGTACCAGACATACATGAAGCAATTGATTGCTATAAAGAAGTGAAACCAGGAATGTACGGAGATCTTGGAAAACCTATGGAAGGATGTAACCAATGGCCCACTAATCCCCCAAACTTCAAGCTACTGATGGAGGAATATATCAGCCTCTGCACAGAACTTTCAAAAAATATCATGCGTGGAATTGCTTTAGCATTGGGTGGATCTCCATATGAATTTGAAGGTGAAAGAGCTGGAGACGCATTTTGGGTGATGCGTCTCATTGGTTACCCAGAGTTACGCAATGACATTGGATGTGGAGCTCACACGGATTATGGTTTGCTGACACTGGTTAATCAGGATGATGATATAAATGCACTTCAGGTGAGAAACCAGTTGGGCGAGTGGATATCAGCACCTCCTGTTCCTGGCACATTCGTCTGCAATATCGGAGACATGCTAAAGATTTACTCGAATGGTTTGTATGAGTCAACTTTGCATCAAGTTATCAACTCTTCCCCGAAATACAGGGTTTGTGTAGCATATTTCTATGAGACCAACTTTGATACAGCAGTGGAGCCTTTGGACATTTGCAAACAGAAGACAGGTGGAGCTAAGAAATTTGAAAGAGCTGTATATGGAGAGCATTTAGTCAGCAAGGTTCAAACAAATTTCGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006950 GO:0007154 GO:0008150 GO:0009267 GO:0009605 GO:0009987 GO:0009991 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0042594 GO:0050896 GO:0051716 GO:0071496

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

320

Amino Acids

35.76

Weight (kDa)

5.73

Isoelectric Point (pI)

22.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	8 - 137	1.1e-31	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	195 - 279	3.1e-20	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005695)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49620 AT3G49630 AT3G49630 AT3G49630 AT3G50210 AT3G50210 AT3G50210 AT3G50210
fragaria_vesca	FvH4_1g16460 FvH4_1g16460 FvH4_1g16460 FvH4_1g16460
malus_domestica	MD02G1177200.v1.1
prunus_persica	Prupe.6G230800_v2.0.a1 Prupe.6G230800_v2.0.a1
pyrus_communis	pycom02g14320
rosa_chinensis	RchiOBHm_Chr2g0106331 RchiOBHm_Chr2g0106341
rosa_laevigata	RLG00000017490
rosa_multiflora	Rmu_sc0010122.1_g000005
rosa_roxburghii	Rroxscaffold_2G00137270
rosa_rugosa	Rorug02G0134700 Rorug02G0134800
rosa_samantha	Rh2AG185900 Rh2BG196100 Rh2CG190900 Rh2DG192000
rosa_wichuraiana	Rw2G014490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	202
AclWI	GGATC	2 cut(s)	59, 514
AcoI	YGGCCR	2 cut(s)	3, 51
AcsI	RAATTY	3 cut(s)	518, 902, 952
AcuI	CTGAAG	1 cut(s)	647
AfaI	GTAC	2 cut(s)	309, 362
AfiI	CCNNNNNNNGG	3 cut(s)	74, 386, 710
AgsI	TTSAA	7 cut(s)	16, 215, 424, 468, 524, 908, 947
AhdI	GACNNNNNGTC	1 cut(s)	16
AjnI	CCWGG	3 cut(s)	85, 352, 709
AluBI	AGCT	6 cut(s)	122, 427, 536, 605, 896, 914
AluI	AGCT	6 cut(s)	122, 427, 536, 605, 896, 914
Alw21I	GWGCWC	1 cut(s)	607
Alw26I	GTCTC	5 cut(s)	164, 534, 566, 729, 830
AlwI	GGATC	2 cut(s)	59, 514
AlwNI	CAGNNNCTG	1 cut(s)	453
AoxI	GGCC	4 cut(s)	3, 51, 154, 401
ApoI	RAATTY	3 cut(s)	518, 902, 952
AspS9I	GGNCC	2 cut(s)	41, 402
AsuHPI	GGTGA	3 cut(s)	539, 565, 679
AvaII	GGWCC	1 cut(s)	41
BaeI	ACNNNNGTAYC	2 cut(s)	840, 873
BalI	TGGCCA	2 cut(s)	5, 53
BanII	GRGCYC	1 cut(s)	607
BbsI	GAAGAC	1 cut(s)	890
Bbv12I	GWGCWC	1 cut(s)	607
BccI	CCATC	1 cut(s)	427
BciT130I	CCWGG	3 cut(s)	87, 354, 711
BciVI	GTATCC	1 cut(s)	257
BcoDI	GTCTC	5 cut(s)	164, 534, 566, 729, 830
BfuI	GTATCC	1 cut(s)	257
BglII	AGATCT	1 cut(s)	367
Bme1390I	CCNGG	3 cut(s)	87, 354, 711
Bme18I	GGWCC	1 cut(s)	41
BmeRI	GACNNNNNGTC	1 cut(s)	16
BmgT120I	GGNCC	2 cut(s)	41, 402
BmiI	GGNNCC	1 cut(s)	861
BmrFI	CCNGG	3 cut(s)	87, 354, 711
BmsI	GCATC	2 cut(s)	546, 790
BpiI	GAAGAC	1 cut(s)	890
BpmI	CTGGAG	1 cut(s)	558
BsaI	GGTCTC	1 cut(s)	830
BsaJI	CCNNGG	2 cut(s)	85, 157
Bsc4I	CCNNNNNNNGG	3 cut(s)	74, 386, 710
Bse1I	ACTGG	2 cut(s)	636, 676
Bse3DI	GCAATG	1 cut(s)	592
BseBI	CCWGG	3 cut(s)	87, 354, 711
BseDI	CCNNGG	2 cut(s)	85, 157
BseGI	GGATG	3 cut(s)	395, 602, 649
BseLI	CCNNNNNNNGG	3 cut(s)	74, 386, 710
BseMI	GCAATG	1 cut(s)	592
BseMII	CTCAG	1 cut(s)	159
BseNI	ACTGG	2 cut(s)	636, 676
BsgI	GTGCAG	1 cut(s)	439
BshFI	GGCC	4 cut(s)	5, 53, 156, 403
BsiHKAI	GWGCWC	1 cut(s)	607
BslI	CCNNNNNNNGG	3 cut(s)	74, 386, 710
BsmAI	GTCTC	5 cut(s)	164, 534, 566, 729, 830
BsmBI	CGTCTC	2 cut(s)	534, 566
BsnI	GGCC	4 cut(s)	5, 53, 156, 403
Bso31I	GGTCTC	1 cut(s)	830
Bsp1286I	GDGCHC	1 cut(s)	607
Bsp143I	GATC	5 cut(s)	64, 115, 240, 367, 506
Bsp19I	CCATGG	1 cut(s)	157
BspACI	CCGC	1 cut(s)	202
BspANI	GGCC	4 cut(s)	5, 53, 156, 403
BspCNI	CTCAG	1 cut(s)	160
BspLI	GGNNCC	1 cut(s)	861
BspPI	GGATC	2 cut(s)	59, 514
BspTNI	GGTCTC	1 cut(s)	830
BsrDI	GCAATG	1 cut(s)	592
BsrI	ACTGG	2 cut(s)	636, 676
BssECI	CCNNGG	2 cut(s)	85, 157
BssMI	GATC	5 cut(s)	64, 115, 240, 367, 506
BssT1I	CCWWGG	1 cut(s)	157
Bst2UI	CCWGG	3 cut(s)	87, 354, 711
Bst6I	CTCTTC	2 cut(s)	51, 802
BstC8I	GCNNGC	1 cut(s)	136
BstDEI	CTNAG	2 cut(s)	168, 897
BstDSI	CCRYGG	1 cut(s)	157
BstEII	GGTNACC	1 cut(s)	569
BstENI	CCTNNNNNAGG	1 cut(s)	384
BstF5I	GGATG	3 cut(s)	395, 602, 649
BstKTI	GATC	5 cut(s)	67, 118, 243, 370, 509
BstMAI	GTCTC	5 cut(s)	164, 534, 566, 729, 830
BstMBI	GATC	5 cut(s)	64, 115, 240, 367, 506
BstMWI	GCNNNNNNNGC	1 cut(s)	542
BstNI	CCWGG	3 cut(s)	87, 354, 711
BstNSI	RCATGY	1 cut(s)	742
BstPI	GGTNACC	1 cut(s)	569
BstSCI	CCNGG	3 cut(s)	85, 352, 709
BstV2I	GAAGAC	1 cut(s)	890
BstX2I	RGATCY	2 cut(s)	367, 506
BstYI	RGATCY	2 cut(s)	367, 506
BsuI	GTATCC	1 cut(s)	257
BsuRI	GGCC	4 cut(s)	5, 53, 156, 403
BtgI	CCRYGG	1 cut(s)	157
BtsCI	GGATG	3 cut(s)	395, 602, 649
BtsI	GCAGTG	1 cut(s)	861
BtsIMutI	CAGTG	3 cut(s)	6, 629, 861
Cac8I	GCNNGC	1 cut(s)	136
CaiI	CAGNNNCTG	1 cut(s)	453
Cfr13I	GGNCC	2 cut(s)	41, 402
CseI	GACGC	2 cut(s)	548, 551
Csp6I	GTAC	2 cut(s)	308, 361
CviAII	CATG	6 cut(s)	98, 158, 224, 320, 478, 739
CviQI	GTAC	2 cut(s)	308, 361
DdeI	CTNAG	2 cut(s)	168, 897
DpnI	GATC	5 cut(s)	66, 117, 242, 369, 508
DpnII	GATC	5 cut(s)	64, 115, 240, 367, 506
DriI	GACNNNNNGTC	1 cut(s)	16
EaeI	YGGCCR	2 cut(s)	3, 51
Eam1104I	CTCTTC	2 cut(s)	51, 802
Eam1105I	GACNNNNNGTC	1 cut(s)	16
EarI	CTCTTC	2 cut(s)	51, 802
Ecl136II	GAGCTC	1 cut(s)	605
Eco130I	CCWWGG	1 cut(s)	157
Eco24I	GRGCYC	1 cut(s)	607
Eco31I	GGTCTC	1 cut(s)	830
Eco32I	GATATC	1 cut(s)	693
Eco47I	GGWCC	1 cut(s)	41
Eco53kI	GAGCTC	1 cut(s)	605
Eco57I	CTGAAG	1 cut(s)	647
Eco91I	GGTNACC	1 cut(s)	569
EcoICRI	GAGCTC	1 cut(s)	605
EcoNI	CCTNNNNNAGG	1 cut(s)	384
EcoO65I	GGTNACC	1 cut(s)	569
EcoRII	CCWGG	3 cut(s)	85, 352, 709
EcoRV	GATATC	1 cut(s)	693
EcoT14I	CCWWGG	1 cut(s)	157
EcoT38I	GRGCYC	1 cut(s)	607
ErhI	CCWWGG	1 cut(s)	157
Esp3I	CGTCTC	2 cut(s)	534, 566
FaeI	CATG	6 cut(s)	101, 161, 227, 323, 481, 742
FatI	CATG	6 cut(s)	97, 157, 223, 319, 477, 738
FauI	CCCGC	1 cut(s)	209
FauNDI	CATATG	1 cut(s)	514
FokI	GGATG	3 cut(s)	402, 609, 656
FriOI	GRGCYC	1 cut(s)	607
GsuI	CTGGAG	1 cut(s)	558
HaeIII	GGCC	4 cut(s)	5, 53, 156, 403
HgaI	GACGC	2 cut(s)	548, 551
Hin1II	CATG	6 cut(s)	101, 161, 227, 323, 481, 742
HincII	GTYRAC	1 cut(s)	774
HindII	GTYRAC	1 cut(s)	774
HindIII	AAGCTT	1 cut(s)	120
HinfI	GANTC	3 cut(s)	172, 193, 770
HphI	GGTGA	3 cut(s)	539, 565, 679
Hpy166II	GTNNAC	2 cut(s)	308, 774
Hpy188I	TCNGA	3 cut(s)	198, 279, 734
Hpy188III	TCNNGA	5 cut(s)	80, 167, 190, 244, 641
Hpy8I	GTNNAC	2 cut(s)	308, 774
HpyAV	CCTTC	2 cut(s)	380, 518
HpyCH4V	TGCA	5 cut(s)	456, 659, 726, 781, 876
HpyF10VI	GCNNNNNNNGC	1 cut(s)	542
HpyF3I	CTNAG	2 cut(s)	168, 897
Hsp92II	CATG	6 cut(s)	101, 161, 227, 323, 481, 742
Kzo9I	GATC	5 cut(s)	64, 115, 240, 367, 506
LmnI	GCTCC	3 cut(s)	602, 859, 893
LweI	GCATC	2 cut(s)	546, 790
MaeIII	GTNAC	3 cut(s)	392, 569, 579
MalI	GATC	5 cut(s)	66, 117, 242, 369, 508
MboI	GATC	5 cut(s)	64, 115, 240, 367, 506
MboII	GAAGA	4 cut(s)	38, 133, 789, 895
MfeI	CAATTG	1 cut(s)	327
MflI	RGATCY	2 cut(s)	367, 506
MhlI	GDGCHC	1 cut(s)	607
MlsI	TGGCCA	2 cut(s)	5, 53
MluCI	AATT	8 cut(s)	30, 110, 282, 327, 486, 518, 902, 952
MluNI	TGGCCA	2 cut(s)	5, 53
MlyI	GAGTC	2 cut(s)	166, 779
MnlI	CCTC	5 cut(s)	54, 220, 430, 461, 711
Mox20I	TGGCCA	2 cut(s)	5, 53
MscI	TGGCCA	2 cut(s)	5, 53
MseI	TTAA	2 cut(s)	179, 636
Msp20I	TGGCCA	2 cut(s)	5, 53
MspR9I	CCNGG	3 cut(s)	87, 354, 711
MunI	CAATTG	1 cut(s)	327
MvaI	CCWGG	3 cut(s)	87, 354, 711
MwoI	GCNNNNNNNGC	1 cut(s)	542
NcoI	CCATGG	1 cut(s)	157
NdeI	CATATG	1 cut(s)	514
NdeII	GATC	5 cut(s)	64, 115, 240, 367, 506
NlaIII	CATG	6 cut(s)	101, 161, 227, 323, 481, 742
NlaIV	GGNNCC	1 cut(s)	861
NspI	RCATGY	1 cut(s)	742
PfeI	GAWTC	1 cut(s)	193
PleI	GAGTC	2 cut(s)	166, 778
PpsI	GAGTC	2 cut(s)	166, 778
Psp124BI	GAGCTC	1 cut(s)	607
Psp6I	CCWGG	3 cut(s)	85, 352, 709
PspEI	GGTNACC	1 cut(s)	569
PspGI	CCWGG	3 cut(s)	85, 352, 709
PspN4I	GGNNCC	1 cut(s)	861
PspPI	GGNCC	2 cut(s)	41, 402
PstNI	CAGNNNCTG	1 cut(s)	453
PsuI	RGATCY	2 cut(s)	367, 506
RsaI	GTAC	2 cut(s)	309, 362
RsaNI	GTAC	2 cut(s)	308, 361
SacI	GAGCTC	1 cut(s)	607
SaqAI	TTAA	2 cut(s)	179, 636
Sau3AI	GATC	5 cut(s)	64, 115, 240, 367, 506
Sau96I	GGNCC	2 cut(s)	41, 402
SchI	GAGTC	2 cut(s)	166, 779
ScrFI	CCNGG	3 cut(s)	87, 354, 711
SduI	GDGCHC	1 cut(s)	607
SfaNI	GCATC	2 cut(s)	546, 790
SinI	GGWCC	1 cut(s)	41
Sse9I	AATT	8 cut(s)	30, 110, 282, 327, 486, 518, 902, 952
SsiI	CCGC	1 cut(s)	202
SstI	GAGCTC	1 cut(s)	607
StyD4I	CCNGG	3 cut(s)	85, 352, 709
StyI	CCWWGG	1 cut(s)	157
TaqI	TCGA	1 cut(s)	755
TasI	AATT	8 cut(s)	30, 110, 282, 327, 486, 518, 902, 952
TfiI	GAWTC	1 cut(s)	193
Tru1I	TTAA	2 cut(s)	179, 636
Tru9I	TTAA	2 cut(s)	179, 636
TscAI	CASTG	3 cut(s)	13, 636, 861
TspDTI	ATGAA	2 cut(s)	336, 531
TspGWI	ACGGA	2 cut(s)	378, 626
TspRI	CASTG	3 cut(s)	13, 636, 861
VpaK11BI	GGWCC	1 cut(s)	41
XagI	CCTNNNNNAGG	1 cut(s)	384
XapI	RAATTY	3 cut(s)	518, 902, 952
XceI	RCATGY	1 cut(s)	742

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.