Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0005695

Physical Location & Seq

Genomic Coordinates Forward (+)

18120436 .. 18124117

Gene Structure 3682 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG185900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 891 bp

ATGGGTCAAGACCCAGGTGTTGCTCATGTAGTCAAGCAATTAGATCAAGCTTGTAAAGAAGCAGGCTTCTTCTATGTGAAAGGCCATGGTGTTCCTGAGACTCTGTTAAAAGAAGTCAAGAATCTGACCCGCAAGTTCTTTGAACTTCCACATGAGGAAAAAGCCAAGATCAAGATGACTGCTGATAAAGGATACAGGGGGTATCAGAGAATTGGGGAGAATATAACCAAAGGTGTACCAGACATACATGAAGCAATTGATTGCTATAAAGAAGTGAAACCAGGAATGTACGGAGATCTTGGAAAACCTATGGAAGGATGTAACCAATGGCCCACTAATCCCCCAAACTTCAAGCTACTGATGGAGGAATATATCAGCCTCTGCACAGAACTTTCAAAAAATATCATGCGTGGAATTGCTTTAGCATTGGGTGGATCTCCATATGAATTTGAAGGTGAAAGAGCTGGAGACGCATTTTGGGTGATGCGTCTCATTGGTTACCCAGAGTTACGCAATGACATTGGATGTGGAGCTCACACGGATTATGGTTTGCTGACACTGGTTAATCAGGATGATGATATAAATGCACTTCAGGTGAGAAACCAGTTGGGCGAGTGGATATCAGCACCTCCTGTTCCTGGCACATTCGTCTGCAATATCGGAGACATGCTAAAGATTTACTCGAATGGTTTGTATGAGTCAACTTTGCATCAAGTTATCAACTCTTCCCCGAAATACAGGGTTTGTGTAGCATATTTCTATGAGACCAACTTTGATACAGCAGTGGAGCCTTTGGACATTTGCAAACAGAAGACAGGTGGAGCTAAGAAATTTGAAAGAGCTGTATATGGAGAGCATTTAGTCAGCAAGGTTCAAACAAATTTCGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006950 GO:0007154 GO:0008150 GO:0009267 GO:0009605 GO:0009987 GO:0009991 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0042594 GO:0050896 GO:0051716 GO:0071496

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

296

Amino Acids

33.18

Weight (kDa)

5.86

Isoelectric Point (pI)

22.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	5 - 113	1.1e-29	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	171 - 255	2.7e-20	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005695)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49620 AT3G49630 AT3G49630 AT3G49630 AT3G50210 AT3G50210 AT3G50210 AT3G50210
fragaria_vesca	FvH4_1g16460 FvH4_1g16460 FvH4_1g16460 FvH4_1g16460
malus_domestica	MD02G1177200.v1.1
prunus_persica	Prupe.6G230800_v2.0.a1 Prupe.6G230800_v2.0.a1
pyrus_communis	pycom02g14320
rosa_chinensis	RchiOBHm_Chr2g0106331 RchiOBHm_Chr2g0106341
rosa_laevigata	RLG00000017490
rosa_multiflora	Rmu_sc0010122.1_g000005
rosa_roxburghii	Rroxscaffold_2G00137270
rosa_rugosa	Rorug02G0134700 Rorug02G0134800
rosa_samantha	Rh2AG185900 Rh2BG196100 Rh2CG190900 Rh2DG192000
rosa_wichuraiana	Rw2G014490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	130
AclWI	GGATC	1 cut(s)	442
AcsI	RAATTY	3 cut(s)	446, 830, 880
AcuI	CTGAAG	1 cut(s)	575
AfaI	GTAC	2 cut(s)	237, 290
AfiI	CCNNNNNNNGG	2 cut(s)	314, 638
AgsI	TTSAA	6 cut(s)	143, 352, 396, 452, 836, 875
AjnI	CCWGG	3 cut(s)	13, 280, 637
AluBI	AGCT	6 cut(s)	50, 355, 464, 533, 824, 842
AluI	AGCT	6 cut(s)	50, 355, 464, 533, 824, 842
Alw21I	GWGCWC	1 cut(s)	535
Alw26I	GTCTC	5 cut(s)	92, 462, 494, 657, 758
AlwI	GGATC	1 cut(s)	442
AlwNI	CAGNNNCTG	1 cut(s)	381
AoxI	GGCC	2 cut(s)	82, 329
ApoI	RAATTY	3 cut(s)	446, 830, 880
AspS9I	GGNCC	1 cut(s)	330
AsuHPI	GGTGA	3 cut(s)	467, 493, 607
BaeI	ACNNNNGTAYC	2 cut(s)	768, 801
BanII	GRGCYC	1 cut(s)	535
BbsI	GAAGAC	1 cut(s)	818
Bbv12I	GWGCWC	1 cut(s)	535
BccI	CCATC	1 cut(s)	355
BciT130I	CCWGG	3 cut(s)	15, 282, 639
BciVI	GTATCC	1 cut(s)	185
BcoDI	GTCTC	5 cut(s)	92, 462, 494, 657, 758
BfuI	GTATCC	1 cut(s)	185
BglII	AGATCT	1 cut(s)	295
Bme1390I	CCNGG	3 cut(s)	15, 282, 639
BmgT120I	GGNCC	1 cut(s)	330
BmiI	GGNNCC	1 cut(s)	789
BmrFI	CCNGG	3 cut(s)	15, 282, 639
BmsI	GCATC	2 cut(s)	474, 718
BpiI	GAAGAC	1 cut(s)	818
BpmI	CTGGAG	1 cut(s)	486
BsaI	GGTCTC	1 cut(s)	758
BsaJI	CCNNGG	2 cut(s)	13, 85
Bsc4I	CCNNNNNNNGG	2 cut(s)	314, 638
Bse1I	ACTGG	2 cut(s)	564, 604
Bse3DI	GCAATG	1 cut(s)	520
BseBI	CCWGG	3 cut(s)	15, 282, 639
BseDI	CCNNGG	2 cut(s)	13, 85
BseGI	GGATG	3 cut(s)	323, 530, 577
BseLI	CCNNNNNNNGG	2 cut(s)	314, 638
BseMI	GCAATG	1 cut(s)	520
BseMII	CTCAG	1 cut(s)	87
BseNI	ACTGG	2 cut(s)	564, 604
BsgI	GTGCAG	1 cut(s)	367
BshFI	GGCC	2 cut(s)	84, 331
BsiHKAI	GWGCWC	1 cut(s)	535
BslI	CCNNNNNNNGG	2 cut(s)	314, 638
BsmAI	GTCTC	5 cut(s)	92, 462, 494, 657, 758
BsmBI	CGTCTC	2 cut(s)	462, 494
BsnI	GGCC	2 cut(s)	84, 331
Bso31I	GGTCTC	1 cut(s)	758
Bsp1286I	GDGCHC	1 cut(s)	535
Bsp143I	GATC	4 cut(s)	43, 168, 295, 434
Bsp19I	CCATGG	1 cut(s)	85
BspACI	CCGC	1 cut(s)	130
BspANI	GGCC	2 cut(s)	84, 331
BspCNI	CTCAG	1 cut(s)	88
BspLI	GGNNCC	1 cut(s)	789
BspPI	GGATC	1 cut(s)	442
BspTNI	GGTCTC	1 cut(s)	758
BsrDI	GCAATG	1 cut(s)	520
BsrI	ACTGG	2 cut(s)	564, 604
BssECI	CCNNGG	2 cut(s)	13, 85
BssMI	GATC	4 cut(s)	43, 168, 295, 434
BssT1I	CCWWGG	1 cut(s)	85
Bst2UI	CCWGG	3 cut(s)	15, 282, 639
Bst6I	CTCTTC	1 cut(s)	730
BstC8I	GCNNGC	1 cut(s)	64
BstDEI	CTNAG	2 cut(s)	96, 825
BstDSI	CCRYGG	1 cut(s)	85
BstEII	GGTNACC	1 cut(s)	497
BstENI	CCTNNNNNAGG	1 cut(s)	312
BstF5I	GGATG	3 cut(s)	323, 530, 577
BstKTI	GATC	4 cut(s)	46, 171, 298, 437
BstMAI	GTCTC	5 cut(s)	92, 462, 494, 657, 758
BstMBI	GATC	4 cut(s)	43, 168, 295, 434
BstMWI	GCNNNNNNNGC	1 cut(s)	470
BstNI	CCWGG	3 cut(s)	15, 282, 639
BstNSI	RCATGY	1 cut(s)	670
BstPI	GGTNACC	1 cut(s)	497
BstSCI	CCNGG	3 cut(s)	13, 280, 637
BstV2I	GAAGAC	1 cut(s)	818
BstX2I	RGATCY	2 cut(s)	295, 434
BstYI	RGATCY	2 cut(s)	295, 434
BsuI	GTATCC	1 cut(s)	185
BsuRI	GGCC	2 cut(s)	84, 331
BtgI	CCRYGG	1 cut(s)	85
BtsCI	GGATG	3 cut(s)	323, 530, 577
BtsI	GCAGTG	1 cut(s)	789
BtsIMutI	CAGTG	2 cut(s)	557, 789
Cac8I	GCNNGC	1 cut(s)	64
CaiI	CAGNNNCTG	1 cut(s)	381
Cfr13I	GGNCC	1 cut(s)	330
CseI	GACGC	2 cut(s)	476, 479
Csp6I	GTAC	2 cut(s)	236, 289
CviAII	CATG	6 cut(s)	26, 86, 152, 248, 406, 667
CviQI	GTAC	2 cut(s)	236, 289
DdeI	CTNAG	2 cut(s)	96, 825
DpnI	GATC	4 cut(s)	45, 170, 297, 436
DpnII	GATC	4 cut(s)	43, 168, 295, 434
Eam1104I	CTCTTC	1 cut(s)	730
EarI	CTCTTC	1 cut(s)	730
Ecl136II	GAGCTC	1 cut(s)	533
Eco130I	CCWWGG	1 cut(s)	85
Eco24I	GRGCYC	1 cut(s)	535
Eco31I	GGTCTC	1 cut(s)	758
Eco32I	GATATC	1 cut(s)	621
Eco53kI	GAGCTC	1 cut(s)	533
Eco57I	CTGAAG	1 cut(s)	575
Eco91I	GGTNACC	1 cut(s)	497
EcoICRI	GAGCTC	1 cut(s)	533
EcoNI	CCTNNNNNAGG	1 cut(s)	312
EcoO65I	GGTNACC	1 cut(s)	497
EcoRII	CCWGG	3 cut(s)	13, 280, 637
EcoRV	GATATC	1 cut(s)	621
EcoT14I	CCWWGG	1 cut(s)	85
EcoT38I	GRGCYC	1 cut(s)	535
ErhI	CCWWGG	1 cut(s)	85
Esp3I	CGTCTC	2 cut(s)	462, 494
FaeI	CATG	6 cut(s)	29, 89, 155, 251, 409, 670
FatI	CATG	6 cut(s)	25, 85, 151, 247, 405, 666
FauI	CCCGC	1 cut(s)	137
FauNDI	CATATG	1 cut(s)	442
FokI	GGATG	3 cut(s)	330, 537, 584
FriOI	GRGCYC	1 cut(s)	535
GsuI	CTGGAG	1 cut(s)	486
HaeIII	GGCC	2 cut(s)	84, 331
HgaI	GACGC	2 cut(s)	476, 479
Hin1II	CATG	6 cut(s)	29, 89, 155, 251, 409, 670
HincII	GTYRAC	1 cut(s)	702
HindII	GTYRAC	1 cut(s)	702
HindIII	AAGCTT	1 cut(s)	48
HinfI	GANTC	3 cut(s)	100, 121, 698
HphI	GGTGA	3 cut(s)	467, 493, 607
Hpy166II	GTNNAC	2 cut(s)	236, 702
Hpy188I	TCNGA	3 cut(s)	126, 207, 662
Hpy188III	TCNNGA	5 cut(s)	8, 95, 118, 172, 569
Hpy8I	GTNNAC	2 cut(s)	236, 702
HpyAV	CCTTC	2 cut(s)	308, 446
HpyCH4V	TGCA	5 cut(s)	384, 587, 654, 709, 804
HpyF10VI	GCNNNNNNNGC	1 cut(s)	470
HpyF3I	CTNAG	2 cut(s)	96, 825
Hsp92II	CATG	6 cut(s)	29, 89, 155, 251, 409, 670
Kzo9I	GATC	4 cut(s)	43, 168, 295, 434
LmnI	GCTCC	3 cut(s)	530, 787, 821
LweI	GCATC	2 cut(s)	474, 718
MaeIII	GTNAC	3 cut(s)	320, 497, 507
MalI	GATC	4 cut(s)	45, 170, 297, 436
MboI	GATC	4 cut(s)	43, 168, 295, 434
MboII	GAAGA	3 cut(s)	61, 717, 823
MfeI	CAATTG	1 cut(s)	255
MflI	RGATCY	2 cut(s)	295, 434
MhlI	GDGCHC	1 cut(s)	535
MluCI	AATT	7 cut(s)	38, 210, 255, 414, 446, 830, 880
MlyI	GAGTC	2 cut(s)	94, 707
MnlI	CCTC	4 cut(s)	148, 358, 389, 639
MseI	TTAA	2 cut(s)	107, 564
MspR9I	CCNGG	3 cut(s)	15, 282, 639
MunI	CAATTG	1 cut(s)	255
MvaI	CCWGG	3 cut(s)	15, 282, 639
MwoI	GCNNNNNNNGC	1 cut(s)	470
NcoI	CCATGG	1 cut(s)	85
NdeI	CATATG	1 cut(s)	442
NdeII	GATC	4 cut(s)	43, 168, 295, 434
NlaIII	CATG	6 cut(s)	29, 89, 155, 251, 409, 670
NlaIV	GGNNCC	1 cut(s)	789
NspI	RCATGY	1 cut(s)	670
PfeI	GAWTC	1 cut(s)	121
PleI	GAGTC	2 cut(s)	94, 706
PpsI	GAGTC	2 cut(s)	94, 706
Psp124BI	GAGCTC	1 cut(s)	535
Psp6I	CCWGG	3 cut(s)	13, 280, 637
PspEI	GGTNACC	1 cut(s)	497
PspGI	CCWGG	3 cut(s)	13, 280, 637
PspN4I	GGNNCC	1 cut(s)	789
PspPI	GGNCC	1 cut(s)	330
PstNI	CAGNNNCTG	1 cut(s)	381
PsuI	RGATCY	2 cut(s)	295, 434
RsaI	GTAC	2 cut(s)	237, 290
RsaNI	GTAC	2 cut(s)	236, 289
SacI	GAGCTC	1 cut(s)	535
SaqAI	TTAA	2 cut(s)	107, 564
Sau3AI	GATC	4 cut(s)	43, 168, 295, 434
Sau96I	GGNCC	1 cut(s)	330
SchI	GAGTC	2 cut(s)	94, 707
ScrFI	CCNGG	3 cut(s)	15, 282, 639
SduI	GDGCHC	1 cut(s)	535
SfaNI	GCATC	2 cut(s)	474, 718
Sse9I	AATT	7 cut(s)	38, 210, 255, 414, 446, 830, 880
SsiI	CCGC	1 cut(s)	130
SstI	GAGCTC	1 cut(s)	535
StyD4I	CCNGG	3 cut(s)	13, 280, 637
StyI	CCWWGG	1 cut(s)	85
TaqI	TCGA	1 cut(s)	683
TasI	AATT	7 cut(s)	38, 210, 255, 414, 446, 830, 880
TfiI	GAWTC	1 cut(s)	121
Tru1I	TTAA	2 cut(s)	107, 564
Tru9I	TTAA	2 cut(s)	107, 564
TscAI	CASTG	2 cut(s)	564, 789
TspDTI	ATGAA	2 cut(s)	264, 459
TspGWI	ACGGA	2 cut(s)	306, 554
TspRI	CASTG	2 cut(s)	564, 789
XagI	CCTNNNNNAGG	1 cut(s)	312
XapI	RAATTY	3 cut(s)	446, 830, 880
XceI	RCATGY	1 cut(s)	670

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.