Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0005695

Physical Location & Seq

Genomic Coordinates Reverse (-)

23370816 .. 23373749

Gene Structure 2934 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G230800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 993 bp

ATGGCAACAGACTTCAAGTCCATACCCATAATCGATATTGGTCCCCTTTTGGCCAAGTGTGATGATCCCAAAATGGGTCAAGACTCTGGTGTTGCTCAAGTTGTCAAACAATTAGATCAAGCTTGTAAAGAGGCTGGCTTTTTCTATGTGAAAGGTCATGGTATTCCTGAGACTCTACTCAAACAAGTCAAGAATCTGACACGCAAGTTTTTTGAGCTTCCATATGAAGAAAAACTCAAAATCAAGATGACTGCAGATAGTGGATACAGGGGATATCAGAGAATTGGGGAGAACATAACCAAAGGTGTACCTGACATGCATGAAGCCATTGATTGCTATAAAGAACTGAAACCAGGGATGTATGGAGATCTTGGAAAACCTATGGAAGGATGTAACCAATGGCCAATTAAGCCCACAAACTTCAAGATGCTGATGGAGGAATATGTTAGCCTCTGCACAGAACTTTCAAGAAATATAATGCGTGGAATCGCTTTAGCATTGGGTGGTTCACCATATGAATTTGAAGGTGAAAGAGCTGGAAATGCATTTTGGGTGATGCGGCTCATTGGTTACCCAGGTGTACACTCTGCTAATGGCTCAAACATTCCAAAGAAGGACATTGGATGTGGAGCTCACACTGATTATGGTTTGTTGACATTGGTTAATCAGGATGACGATATAACTGCACTTCAGGTGAGAAACCATTCGGGCGAGTGGATATCAGCTCCTCCTGTTCCGGGAACATTTGTCTGCAATATCGGAGACATGTTAAAGATTTACTCAAATGGTTTATATGAGTCTACTTTGCATCAAGTTATCAACTCCTCCCCAAAATATCGGGTCTGTGTGGCATATTTCTATGAGACAAATTTCGATACAGCAGTGGAGCCTCTGGATATTTGTAAAGAGAGGACAACTGGAGCTAAGAAATTTGAAAGAGCTGTTTACGGAGAACATTTGGTTAAAAAAGTCCAAACAAACTTCGTTTATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006950 GO:0007154 GO:0008150 GO:0009267 GO:0009605 GO:0009987 GO:0009991 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0042594 GO:0050896 GO:0051716 GO:0071496

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

331

Amino Acids

36.9

Weight (kDa)

6.4

Isoelectric Point (pI)

22.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005695)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49620 AT3G49630 AT3G49630 AT3G49630 AT3G50210 AT3G50210 AT3G50210 AT3G50210
fragaria_vesca	FvH4_1g16460 FvH4_1g16460 FvH4_1g16460 FvH4_1g16460
malus_domestica	MD02G1177200.v1.1
prunus_persica	Prupe.6G230800_v2.0.a1 Prupe.6G230800_v2.0.a1
pyrus_communis	pycom02g14320
rosa_chinensis	RchiOBHm_Chr2g0106331 RchiOBHm_Chr2g0106341
rosa_laevigata	RLG00000017490
rosa_multiflora	Rmu_sc0010122.1_g000005
rosa_roxburghii	Rroxscaffold_2G00137270
rosa_rugosa	Rorug02G0134700 Rorug02G0134800
rosa_samantha	Rh2AG185900 Rh2BG196100 Rh2CG190900 Rh2DG192000
rosa_wichuraiana	Rw2G014490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	800
AciI	CCGC	1 cut(s)	559
AclWI	GGATC	1 cut(s)	59
AcoI	YGGCCR	2 cut(s)	51, 401
AcsI	RAATTY	3 cut(s)	518, 868, 929
AcuI	CTGAAG	1 cut(s)	674
AfaI	GTAC	2 cut(s)	309, 582
AfiI	CCNNNNNNNGG	3 cut(s)	74, 386, 737
AflIII	ACRYGT	1 cut(s)	765
AgsI	TTSAA	5 cut(s)	16, 424, 468, 524, 935
AhdI	GACNNNNNGTC	1 cut(s)	16
AjnI	CCWGG	2 cut(s)	352, 574
AjuI	GAANNNNNNNTTGG	2 cut(s)	532, 564
AluBI	AGCT	7 cut(s)	122, 217, 536, 632, 725, 923, 941
AluI	AGCT	7 cut(s)	122, 217, 536, 632, 725, 923, 941
Alw21I	GWGCWC	1 cut(s)	634
Alw26I	GTCTC	3 cut(s)	164, 756, 857
AlwI	GGATC	1 cut(s)	59
AoxI	GGCC	2 cut(s)	51, 401
ApoI	RAATTY	3 cut(s)	518, 868, 929
Asp700I	GAANNNNTTC	1 cut(s)	703
AspS9I	GGNCC	1 cut(s)	41
AsuC2I	CCSGG	1 cut(s)	738
AsuHPI	GGTGA	4 cut(s)	501, 539, 565, 706
AvaII	GGWCC	1 cut(s)	41
BaeI	ACNNNNGTAYC	2 cut(s)	867, 900
BalI	TGGCCA	2 cut(s)	53, 403
BanII	GRGCYC	1 cut(s)	634
Bbv12I	GWGCWC	1 cut(s)	634
BccI	CCATC	1 cut(s)	427
BcgI	CGANNNNNNTGC	2 cut(s)	665, 699
BciT130I	CCWGG	2 cut(s)	354, 576
BciVI	GTATCC	1 cut(s)	257
BcnI	CCSGG	1 cut(s)	738
BcoDI	GTCTC	3 cut(s)	164, 756, 857
BfmI	CTRYAG	1 cut(s)	252
BfuI	GTATCC	1 cut(s)	257
BglII	AGATCT	1 cut(s)	367
BisI	GCNGC	1 cut(s)	560
BlsI	GCNGC	1 cut(s)	561
Bme1390I	CCNGG	3 cut(s)	354, 576, 738
Bme18I	GGWCC	1 cut(s)	41
BmeRI	GACNNNNNGTC	1 cut(s)	16
BmgT120I	GGNCC	1 cut(s)	41
BmiI	GGNNCC	2 cut(s)	43, 888
BmrFI	CCNGG	3 cut(s)	354, 576, 738
BmsI	GCATC	3 cut(s)	417, 546, 817
BpmI	CTGGAG	1 cut(s)	939
BpuEI	CTTGAG	1 cut(s)	81
BpuMI	CCSGG	1 cut(s)	738
Bsa29I	ATCGAT	1 cut(s)	33
BsaJI	CCNNGG	2 cut(s)	353, 574
Bsc4I	CCNNNNNNNGG	3 cut(s)	74, 386, 737
Bse1I	ACTGG	1 cut(s)	922
BseBI	CCWGG	2 cut(s)	354, 576
BseCI	ATCGAT	1 cut(s)	33
BseDI	CCNNGG	2 cut(s)	353, 574
BseGI	GGATG	4 cut(s)	363, 395, 629, 676
BseLI	CCNNNNNNNGG	3 cut(s)	74, 386, 737
BseMII	CTCAG	1 cut(s)	159
BseNI	ACTGG	1 cut(s)	922
BseRI	GAGGAG	2 cut(s)	717, 814
BsgI	GTGCAG	2 cut(s)	439, 669
BshFI	GGCC	2 cut(s)	53, 403
BshVI	ATCGAT	1 cut(s)	33
BsiHKAI	GWGCWC	1 cut(s)	634
BsiSI	CCGG	1 cut(s)	737
BslFI	GGGAC	1 cut(s)	27
BslI	CCNNNNNNNGG	3 cut(s)	74, 386, 737
BsmAI	GTCTC	3 cut(s)	164, 756, 857
BsmFI	GGGAC	1 cut(s)	27
BsnI	GGCC	2 cut(s)	53, 403
Bsp1286I	GDGCHC	1 cut(s)	634
Bsp1407I	TGTACA	1 cut(s)	580
Bsp143I	GATC	3 cut(s)	64, 115, 367
BspACI	CCGC	1 cut(s)	559
BspANI	GGCC	2 cut(s)	53, 403
BspCNI	CTCAG	1 cut(s)	160
BspDI	ATCGAT	1 cut(s)	33
BspLI	GGNNCC	2 cut(s)	43, 888
BspMAI	CTGCAG	1 cut(s)	256
BspPI	GGATC	1 cut(s)	59
BsrGI	TGTACA	1 cut(s)	580
BsrI	ACTGG	1 cut(s)	922
BssECI	CCNNGG	2 cut(s)	353, 574
BssMI	GATC	3 cut(s)	64, 115, 367
Bst2UI	CCWGG	2 cut(s)	354, 576
BstAUI	TGTACA	1 cut(s)	580
BstC8I	GCNNGC	1 cut(s)	136
BstDEI	CTNAG	2 cut(s)	168, 924
BstEII	GGTNACC	1 cut(s)	569
BstENI	CCTNNNNNAGG	1 cut(s)	384
BstF5I	GGATG	4 cut(s)	363, 395, 629, 676
BstKTI	GATC	3 cut(s)	67, 118, 370
BstMAI	GTCTC	3 cut(s)	164, 756, 857
BstMBI	GATC	3 cut(s)	64, 115, 367
BstMWI	GCNNNNNNNGC	2 cut(s)	409, 542
BstNI	CCWGG	2 cut(s)	354, 576
BstNSI	RCATGY	2 cut(s)	319, 769
BstPI	GGTNACC	1 cut(s)	569
BstSCI	CCNGG	3 cut(s)	352, 574, 736
BstSFI	CTRYAG	1 cut(s)	252
BstX2I	RGATCY	1 cut(s)	367
BstYI	RGATCY	1 cut(s)	367
Bsu15I	ATCGAT	1 cut(s)	33
BsuI	GTATCC	1 cut(s)	257
BsuRI	GGCC	2 cut(s)	53, 403
BsuTUI	ATCGAT	1 cut(s)	33
BtsCI	GGATG	4 cut(s)	363, 395, 629, 676
BtsI	GCAGTG	1 cut(s)	888
BtsIMutI	CAGTG	2 cut(s)	636, 888
Cac8I	GCNNGC	1 cut(s)	136
Cfr13I	GGNCC	1 cut(s)	41
ClaI	ATCGAT	1 cut(s)	33
Csp6I	GTAC	2 cut(s)	308, 581
CviAII	CATG	4 cut(s)	158, 316, 320, 766
CviQI	GTAC	2 cut(s)	308, 581
DdeI	CTNAG	2 cut(s)	168, 924
DpnI	GATC	3 cut(s)	66, 117, 369
DpnII	GATC	3 cut(s)	64, 115, 367
DriI	GACNNNNNGTC	1 cut(s)	16
EaeI	YGGCCR	2 cut(s)	51, 401
Eam1105I	GACNNNNNGTC	1 cut(s)	16
Ecl136II	GAGCTC	1 cut(s)	632
Eco24I	GRGCYC	1 cut(s)	634
Eco32I	GATATC	2 cut(s)	275, 720
Eco47I	GGWCC	1 cut(s)	41
Eco53kI	GAGCTC	1 cut(s)	632
Eco57I	CTGAAG	1 cut(s)	674
Eco91I	GGTNACC	1 cut(s)	569
EcoICRI	GAGCTC	1 cut(s)	632
EcoNI	CCTNNNNNAGG	1 cut(s)	384
EcoO65I	GGTNACC	1 cut(s)	569
EcoRII	CCWGG	2 cut(s)	352, 574
EcoRV	GATATC	2 cut(s)	275, 720
EcoT22I	ATGCAT	2 cut(s)	321, 547
EcoT38I	GRGCYC	1 cut(s)	634
FaeI	CATG	4 cut(s)	161, 319, 323, 769
FaqI	GGGAC	1 cut(s)	27
FatI	CATG	4 cut(s)	157, 315, 319, 765
FauNDI	CATATG	2 cut(s)	223, 514
FblI	GTMKAC	1 cut(s)	800
Fnu4HI	GCNGC	1 cut(s)	560
FokI	GGATG	4 cut(s)	370, 402, 636, 683
FriOI	GRGCYC	1 cut(s)	634
Fsp4HI	GCNGC	1 cut(s)	560
GluI	GCNGC	1 cut(s)	560
GsuI	CTGGAG	1 cut(s)	939
HaeIII	GGCC	2 cut(s)	53, 403
HapII	CCGG	1 cut(s)	737
Hin1II	CATG	4 cut(s)	161, 319, 323, 769
HincII	GTYRAC	1 cut(s)	654
HindII	GTYRAC	1 cut(s)	654
HindIII	AAGCTT	1 cut(s)	120
HinfI	GANTC	5 cut(s)	83, 172, 193, 486, 797
HpaII	CCGG	1 cut(s)	737
HphI	GGTGA	4 cut(s)	501, 539, 565, 706
Hpy166II	GTNNAC	7 cut(s)	308, 509, 581, 583, 654, 801, 946
Hpy188I	TCNGA	3 cut(s)	198, 279, 761
Hpy188III	TCNNGA	8 cut(s)	80, 167, 190, 244, 424, 468, 668, 893
Hpy8I	GTNNAC	7 cut(s)	308, 509, 581, 583, 654, 801, 946
HpyAV	CCTTC	3 cut(s)	380, 518, 607
HpyCH4V	TGCA	7 cut(s)	254, 319, 456, 545, 686, 753, 808
HpyF10VI	GCNNNNNNNGC	2 cut(s)	409, 542
HpyF3I	CTNAG	2 cut(s)	168, 924
Hsp92II	CATG	4 cut(s)	161, 319, 323, 769
Kzo9I	GATC	3 cut(s)	64, 115, 367
LmnI	GCTCC	4 cut(s)	629, 730, 886, 920
LweI	GCATC	3 cut(s)	417, 546, 817
MaeIII	GTNAC	2 cut(s)	392, 569
MalI	GATC	3 cut(s)	66, 117, 369
MboI	GATC	3 cut(s)	64, 115, 367
MboII	GAAGA	1 cut(s)	239
MflI	RGATCY	1 cut(s)	367
MhlI	GDGCHC	1 cut(s)	634
MlsI	TGGCCA	2 cut(s)	53, 403
MluCI	AATT	6 cut(s)	110, 282, 405, 518, 868, 929
MluNI	TGGCCA	2 cut(s)	53, 403
MlyI	GAGTC	3 cut(s)	77, 166, 806
MnlI	CCTC	7 cut(s)	124, 430, 461, 738, 835, 900, 903
Mox20I	TGGCCA	2 cut(s)	53, 403
Mph1103I	ATGCAT	2 cut(s)	321, 547
MroXI	GAANNNNTTC	1 cut(s)	703
MscI	TGGCCA	2 cut(s)	53, 403
MseI	TTAA	4 cut(s)	408, 663, 770, 963
Msp20I	TGGCCA	2 cut(s)	53, 403
MspI	CCGG	1 cut(s)	737
MspR9I	CCNGG	3 cut(s)	354, 576, 738
MvaI	CCWGG	2 cut(s)	354, 576
MwoI	GCNNNNNNNGC	2 cut(s)	409, 542
NciI	CCSGG	1 cut(s)	738
NdeI	CATATG	2 cut(s)	223, 514
NdeII	GATC	3 cut(s)	64, 115, 367
NlaIII	CATG	4 cut(s)	161, 319, 323, 769
NlaIV	GGNNCC	2 cut(s)	43, 888
NsiI	ATGCAT	2 cut(s)	321, 547
NspI	RCATGY	2 cut(s)	319, 769
PciI	ACATGT	1 cut(s)	765
PdmI	GAANNNNTTC	1 cut(s)	703
PfeI	GAWTC	2 cut(s)	193, 486
PfoI	TCCNGGA	1 cut(s)	736
PkrI	GCNGC	1 cut(s)	561
PleI	GAGTC	3 cut(s)	77, 166, 805
PpsI	GAGTC	3 cut(s)	77, 166, 805
PscI	ACATGT	1 cut(s)	765
Psp124BI	GAGCTC	1 cut(s)	634
Psp6I	CCWGG	2 cut(s)	352, 574
PspEI	GGTNACC	1 cut(s)	569
PspGI	CCWGG	2 cut(s)	352, 574
PspN4I	GGNNCC	2 cut(s)	43, 888
PspPI	GGNCC	1 cut(s)	41
PstI	CTGCAG	1 cut(s)	256
PsuI	RGATCY	1 cut(s)	367
RsaI	GTAC	2 cut(s)	309, 582
RsaNI	GTAC	2 cut(s)	308, 581
SacI	GAGCTC	1 cut(s)	634
SaqAI	TTAA	4 cut(s)	408, 663, 770, 963
SatI	GCNGC	1 cut(s)	560
Sau3AI	GATC	3 cut(s)	64, 115, 367
Sau96I	GGNCC	1 cut(s)	41
SchI	GAGTC	3 cut(s)	77, 166, 806
ScrFI	CCNGG	3 cut(s)	354, 576, 738
SduI	GDGCHC	1 cut(s)	634
SfaNI	GCATC	3 cut(s)	417, 546, 817
SfcI	CTRYAG	1 cut(s)	252
SinI	GGWCC	1 cut(s)	41
SmlI	CTYRAG	1 cut(s)	96
SmoI	CTYRAG	1 cut(s)	96
Sse9I	AATT	6 cut(s)	110, 282, 405, 518, 868, 929
SsiI	CCGC	1 cut(s)	559
SstI	GAGCTC	1 cut(s)	634
StyD4I	CCNGG	3 cut(s)	352, 574, 736
TaqI	TCGA	2 cut(s)	33, 873
TasI	AATT	6 cut(s)	110, 282, 405, 518, 868, 929
TatI	WGTACW	1 cut(s)	580
TauI	GCSGC	1 cut(s)	562
TfiI	GAWTC	2 cut(s)	193, 486
Tru1I	TTAA	4 cut(s)	408, 663, 770, 963
Tru9I	TTAA	4 cut(s)	408, 663, 770, 963
TscAI	CASTG	2 cut(s)	643, 888
TspDTI	ATGAA	3 cut(s)	240, 336, 531
TspGWI	ACGGA	1 cut(s)	963
TspRI	CASTG	2 cut(s)	643, 888
VpaK11BI	GGWCC	1 cut(s)	41
XagI	CCTNNNNNAGG	1 cut(s)	384
XapI	RAATTY	3 cut(s)	518, 868, 929
XceI	RCATGY	2 cut(s)	319, 769
XmiI	GTMKAC	1 cut(s)	800
XmnI	GAANNNNTTC	1 cut(s)	703
Zsp2I	ATGCAT	2 cut(s)	321, 547

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.