Rorug02G0134800

Belongs to the iron ascorbate-dependent oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0005695
Physical Location & Seq
Reverse (-)
11645873 .. 11647563
1691 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0134800.1

Sequence Viewer

Length: 1179 bp
ATGGCGCAATACCAGAGCGAATACCCCACAGAGTCTCTCACAGACGAGTACGGCAACCCCGTTACCCGCACTGCCAAGTCTGGCAACCCGATTCACCAAGGCGTGACCGGAGCAAACACCGGAACCGGCTACGGAACTCACGGCACCGGTACTGCACCCACTGGTTTCGGTGGGGCAGCTCCTGGTGGTCACGGCGTCACTACTCTTCCGCGTTCCGGCAGCTCCAGCTCCTCTGAGGATGATGGTTGTGGTGGAAGGAGGAAGAAGAAGGGTTTGAATGAGAAGATCAAGGAGAAGCTGCCAGGTGGCACACGCCGCTCGGATGACCCCTACGGTACAACCCCGACTACCACACCTTATGGTGGACAGCACCAGGATAGGGGAGTGGTGGACCAGATGAAAGAGAAGCTACCAGGTGGTCGCAAGGACGATCCCTACAGTACTACTCATAGCACTACTACACCGGGTTACGGCTTGGCCGGAGAGCACCGTGAGAATAAGGGAGTGGTGGACCAGATGAAGGAGAAGCTACCGGGCGGTCGCAAGAACGATCCCTACAGTACTACTACACCGGGTTACGGTGTGGCCGGAGAGCACCGTGAGAATCAGGGAGAGCACCGTGAGAATAAGGGAGTGCTGGACCAGATGAAAGAGAAGCTACCGGGCGGTCGCAAGGACGATCCCTACAGTACTACTCATAGCACTACTACACCGGGTTACGGTATGGCCGGAGAGCACCGTGAGAATCAGGGAGAGCACCGTGAGAATAAGGGAGTGGTGGACCAGATGAAAGAGAAGCTACCGGGTGGTCGCAAGGAAGATCCCTACAGTACTACTCATAGCACTACTACACCGGGTTACGGCGTGGCCGGAGAGCACTGTGAGAATAAGGGAGAGCACCGTGAGAATAAGGGCATGGCTGACAAGATCAAAGAGAATCTACCATGTGGTCAGGGTGGTCGCAAGGATGATCCCTACCGTACTAATCACAGTACCACGACTGCTGCACCGCCTTACAGTGCTGCAACAGGGGAGCACCGAGGGGAGCACCGTGCTGCAACAGGGGAGCACCGTGCTGCAACAGGGGAGCACCGTGCAACAGGGGAGCACAATGAGAAGAAGGGAATGATGGACAAGATCAAGGAGAAGCTTCCCGGTGGACACAGCACCACTCGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0006950 GO:0007154 GO:0008150 GO:0009267 GO:0009605 GO:0009987 GO:0009991 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0042594 GO:0050896 GO:0051716 GO:0071496
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2OG-FeII_Oxy DIOX_N

Protein Analysis

392

Amino Acids

42.0

Weight (kDa)

8.48

Isoelectric Point (pI)

15.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dehydrin PF00257 13 - 140 1.6e-22 Dehydrin
Dehydrin PF00257 121 - 180 1.1e-09 Dehydrin
Dehydrin PF00257 158 - 223 1.2e-09 Dehydrin
Dehydrin PF00257 203 - 270 2.7e-10 Dehydrin
Dehydrin PF00257 250 - 316 1.5e-09 Dehydrin
Dehydrin PF00257 343 - 388 7.5e-07 Dehydrin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 143
AccBSI CCGCTC 1 cut(s) 318
AccII CGCG 1 cut(s) 211
AciI CCGC 6 cut(s) 67, 209, 316, 537, 666, 1010
AclWI GGATC 5 cut(s) 425, 545, 674, 815, 965
AcoI YGGCCR 4 cut(s) 477, 585, 726, 867
AcyI GRCGYC 1 cut(s) 195
AfaI GTAC 9 cut(s) 50, 151, 337, 442, 562, 691, 832, 982, 994
AfiI CCNNNNNNNGG 8 cut(s) 215, 362, 379, 470, 520, 578, 719, 860
AgeI ACCGGT 1 cut(s) 146
AgsI TTSAA 1 cut(s) 277
AjnI CCWGG 4 cut(s) 181, 301, 372, 412
AluBI AGCT 9 cut(s) 179, 222, 228, 298, 409, 529, 658, 799, 1150
AluI AGCT 9 cut(s) 179, 222, 228, 298, 409, 529, 658, 799, 1150
Alw26I GTCTC 1 cut(s) 39
AlwI GGATC 5 cut(s) 425, 545, 674, 815, 965
AlwNI CAGNNNCTG 1 cut(s) 182
AoxI GGCC 4 cut(s) 477, 585, 726, 867
ApeKI GCWGC 7 cut(s) 176, 219, 298, 1004, 1022, 1055, 1076
AsiGI ACCGGT 1 cut(s) 146
AspLEI GCGC 1 cut(s) 7
AspS9I GGNCC 4 cut(s) 391, 511, 640, 781
AsuC2I CCSGG 8 cut(s) 465, 534, 573, 663, 714, 804, 855, 1155
AsuHPI GGTGA 1 cut(s) 86
AvaII GGWCC 4 cut(s) 391, 511, 640, 781
BanI GGYRCC 1 cut(s) 143
BbvI GCAGC 7 cut(s) 188, 231, 285, 991, 1009, 1042, 1063
BccI CCATC 2 cut(s) 236, 1123
BceAI ACGGC 5 cut(s) 67, 157, 208, 487, 877
BciT130I CCWGG 4 cut(s) 183, 303, 374, 414
BcnI CCSGG 8 cut(s) 465, 534, 573, 663, 714, 804, 855, 1155
BcoDI GTCTC 1 cut(s) 39
BfmI CTRYAG 4 cut(s) 436, 556, 685, 826
BisI GCNGC 8 cut(s) 177, 220, 299, 316, 1005, 1023, 1056, 1077
BlsI GCNGC 8 cut(s) 178, 221, 300, 317, 1006, 1024, 1057, 1078
BmcAI AGTACT 4 cut(s) 442, 562, 691, 832
Bme18I GGWCC 4 cut(s) 391, 511, 640, 781
BmgT120I GGNCC 4 cut(s) 391, 511, 640, 781
BmiI GGNNCC 2 cut(s) 124, 145
BpmI CTGGAG 1 cut(s) 208
BpuMI CCSGG 8 cut(s) 465, 534, 573, 663, 714, 804, 855, 1155
BsaHI GRCGYC 1 cut(s) 195
BsaJI CCNNGG 2 cut(s) 97, 1039
BsaWI WCCGGW 3 cut(s) 107, 119, 146
Bsc4I CCNNNNNNNGG 8 cut(s) 215, 362, 379, 470, 520, 578, 719, 860
Bse118I RCCGGY 2 cut(s) 125, 146
Bse1I ACTGG 1 cut(s) 166
BseBI CCWGG 4 cut(s) 183, 303, 374, 414
BseDI CCNNGG 2 cut(s) 97, 1039
BseGI GGATG 3 cut(s) 244, 328, 973
BseLI CCNNNNNNNGG 8 cut(s) 215, 362, 379, 470, 520, 578, 719, 860
BseMII CTCAG 1 cut(s) 225
BseNI ACTGG 1 cut(s) 166
BseRI GAGGAG 1 cut(s) 220
BseXI GCAGC 7 cut(s) 188, 231, 285, 991, 1009, 1042, 1063
BsgI GTGCAG 2 cut(s) 138, 990
Bsh1236I CGCG 1 cut(s) 211
Bsh1285I CGRYCG 2 cut(s) 541, 670
BshFI GGCC 4 cut(s) 479, 587, 728, 869
BshNI GGYRCC 1 cut(s) 143
BshTI ACCGGT 1 cut(s) 146
BsiEI CGRYCG 2 cut(s) 541, 670
BslI CCNNNNNNNGG 8 cut(s) 215, 362, 379, 470, 520, 578, 719, 860
BsmAI GTCTC 1 cut(s) 39
BsnI GGCC 4 cut(s) 479, 587, 728, 869
Bsp143I GATC 8 cut(s) 285, 430, 550, 679, 820, 927, 970, 1137
BspACI CCGC 6 cut(s) 67, 209, 316, 537, 666, 1010
BspANI GGCC 4 cut(s) 479, 587, 728, 869
BspCNI CTCAG 1 cut(s) 226
BspFNI CGCG 1 cut(s) 211
BspLI GGNNCC 2 cut(s) 124, 145
BspPI GGATC 5 cut(s) 425, 545, 674, 815, 965
BspT107I GGYRCC 1 cut(s) 143
BsrBI CCGCTC 1 cut(s) 318
BsrFI RCCGGY 2 cut(s) 125, 146
BsrI ACTGG 1 cut(s) 166
BssAI RCCGGY 2 cut(s) 125, 146
BssECI CCNNGG 2 cut(s) 97, 1039
BssMI GATC 8 cut(s) 285, 430, 550, 679, 820, 927, 970, 1137
BssNI GRCGYC 1 cut(s) 195
BssT1I CCWWGG 1 cut(s) 97
Bst2UI CCWGG 4 cut(s) 183, 303, 374, 414
Bst6I CTCTTC 1 cut(s) 210
BstACI GRCGYC 1 cut(s) 195
BstDEI CTNAG 1 cut(s) 234
BstF5I GGATG 3 cut(s) 244, 328, 973
BstFNI CGCG 1 cut(s) 211
BstHHI GCGC 1 cut(s) 7
BstKTI GATC 8 cut(s) 288, 433, 553, 682, 823, 930, 973, 1140
BstMAI GTCTC 1 cut(s) 39
BstMBI GATC 8 cut(s) 285, 430, 550, 679, 820, 927, 970, 1137
BstMCI CGRYCG 2 cut(s) 541, 670
BstMWI GCNNNNNNNGC 2 cut(s) 225, 315
BstNI CCWGG 4 cut(s) 183, 303, 374, 414
BstSFI CTRYAG 4 cut(s) 436, 556, 685, 826
BstUI CGCG 1 cut(s) 211
BstV1I GCAGC 7 cut(s) 188, 231, 285, 991, 1009, 1042, 1063
BstX2I RGATCY 1 cut(s) 820
BstYI RGATCY 1 cut(s) 820
BsuRI GGCC 4 cut(s) 479, 587, 728, 869
BtsCI GGATG 3 cut(s) 244, 328, 973
BtsI GCAGTG 1 cut(s) 69
BtsIMutI CAGTG 4 cut(s) 69, 159, 877, 1024
CaiI CAGNNNCTG 1 cut(s) 182
CfoI GCGC 1 cut(s) 7
Cfr10I RCCGGY 2 cut(s) 125, 146
Cfr13I GGNCC 4 cut(s) 391, 511, 640, 781
CseI GACGC 1 cut(s) 184
CsiI ACCWGGT 1 cut(s) 412
Csp6I GTAC 9 cut(s) 49, 150, 336, 441, 561, 690, 831, 981, 993
CspAI ACCGGT 1 cut(s) 146
CviAII CATG 2 cut(s) 916, 945
CviQI GTAC 9 cut(s) 49, 150, 336, 441, 561, 690, 831, 981, 993
DdeI CTNAG 1 cut(s) 234
DpnI GATC 8 cut(s) 287, 432, 552, 681, 822, 929, 972, 1139
DpnII GATC 8 cut(s) 285, 430, 550, 679, 820, 927, 970, 1137
EaeI YGGCCR 4 cut(s) 477, 585, 726, 867
Eam1104I CTCTTC 1 cut(s) 210
EarI CTCTTC 1 cut(s) 210
Eco130I CCWWGG 1 cut(s) 97
Eco47I GGWCC 4 cut(s) 391, 511, 640, 781
EcoRII CCWGG 4 cut(s) 181, 301, 372, 412
EcoT14I CCWWGG 1 cut(s) 97
ErhI CCWWGG 1 cut(s) 97
FaeI CATG 2 cut(s) 919, 948
FaiI YATR 7 cut(s) 360, 450, 699, 725, 840, 917, 946
FatI CATG 2 cut(s) 915, 944
FauI CCCGC 1 cut(s) 74
Fnu4HI GCNGC 8 cut(s) 177, 220, 299, 316, 1005, 1023, 1056, 1077
FokI GGATG 3 cut(s) 251, 335, 980
Fsp4HI GCNGC 8 cut(s) 177, 220, 299, 316, 1005, 1023, 1056, 1077
GlaI GCGC 1 cut(s) 6
GluI GCNGC 8 cut(s) 177, 220, 299, 316, 1005, 1023, 1056, 1077
GsuI CTGGAG 1 cut(s) 208
HaeIII GGCC 4 cut(s) 479, 587, 728, 869
HgaI GACGC 1 cut(s) 184
HhaI GCGC 1 cut(s) 7
Hin1I GRCGYC 1 cut(s) 195
Hin1II CATG 2 cut(s) 919, 948
Hin6I GCGC 1 cut(s) 5
HinP1I GCGC 1 cut(s) 5
HindIII AAGCTT 1 cut(s) 1148
HinfI GANTC 5 cut(s) 32, 91, 604, 745, 937
HphI GGTGA 1 cut(s) 86
Hpy166II GTNNAC 5 cut(s) 365, 391, 511, 781, 1160
Hpy188I TCNGA 2 cut(s) 235, 322
Hpy8I GTNNAC 5 cut(s) 365, 391, 511, 781, 1160
HpyAV CCTTC 4 cut(s) 249, 262, 514, 1114
HpyCH4V TGCA 6 cut(s) 155, 1007, 1025, 1058, 1079, 1097
HpyF10VI GCNNNNNNNGC 2 cut(s) 225, 315
HpyF3I CTNAG 1 cut(s) 234
Hsp92I GRCGYC 1 cut(s) 195
Hsp92II CATG 2 cut(s) 919, 948
HspAI GCGC 1 cut(s) 5
Kzo9I GATC 8 cut(s) 285, 430, 550, 679, 820, 927, 970, 1137
LmnI GCTCC 9 cut(s) 110, 184, 227, 233, 1033, 1045, 1066, 1087, 1105
Lsp1109I GCAGC 7 cut(s) 188, 231, 285, 991, 1009, 1042, 1063
MabI ACCWGGT 1 cut(s) 412
MaeIII GTNAC 8 cut(s) 61, 103, 188, 196, 467, 575, 716, 857
MalI GATC 8 cut(s) 287, 432, 552, 681, 822, 929, 972, 1139
MbiI CCGCTC 1 cut(s) 318
MboI GATC 8 cut(s) 285, 430, 550, 679, 820, 927, 970, 1137
MboII GAAGA 6 cut(s) 197, 274, 277, 295, 830, 1129
MflI RGATCY 1 cut(s) 820
MlyI GAGTC 1 cut(s) 41
MnlI CCTC 4 cut(s) 229, 241, 252, 1034
MvaI CCWGG 4 cut(s) 183, 303, 374, 414
MvnI CGCG 1 cut(s) 211
MwoI GCNNNNNNNGC 2 cut(s) 225, 315
NciI CCSGG 8 cut(s) 465, 534, 573, 663, 714, 804, 855, 1155
NdeII GATC 8 cut(s) 285, 430, 550, 679, 820, 927, 970, 1137
NlaIII CATG 2 cut(s) 919, 948
NlaIV GGNNCC 2 cut(s) 124, 145
NmuCI GTSAC 3 cut(s) 103, 188, 196
PcsI WCGNNNNNNNCGW 1 cut(s) 57
PfeI GAWTC 4 cut(s) 91, 604, 745, 937
PinAI ACCGGT 1 cut(s) 146
PkrI GCNGC 8 cut(s) 178, 221, 300, 317, 1006, 1024, 1057, 1078
PleI GAGTC 1 cut(s) 40
PpsI GAGTC 1 cut(s) 40
Psp6I CCWGG 4 cut(s) 181, 301, 372, 412
PspGI CCWGG 4 cut(s) 181, 301, 372, 412
PspN4I GGNNCC 2 cut(s) 124, 145
PspPI GGNCC 4 cut(s) 391, 511, 640, 781
PsrI GAACNNNNNNTAC 2 cut(s) 539, 571
PstNI CAGNNNCTG 1 cut(s) 182
PsuI RGATCY 1 cut(s) 820
RsaI GTAC 9 cut(s) 50, 151, 337, 442, 562, 691, 832, 982, 994
RsaNI GTAC 9 cut(s) 49, 150, 336, 441, 561, 690, 831, 981, 993
SatI GCNGC 8 cut(s) 177, 220, 299, 316, 1005, 1023, 1056, 1077
Sau3AI GATC 8 cut(s) 285, 430, 550, 679, 820, 927, 970, 1137
Sau96I GGNCC 4 cut(s) 391, 511, 640, 781
ScaI AGTACT 4 cut(s) 442, 562, 691, 832
SchI GAGTC 1 cut(s) 41
SexAI ACCWGGT 1 cut(s) 412
SfcI CTRYAG 4 cut(s) 436, 556, 685, 826
SinI GGWCC 4 cut(s) 391, 511, 640, 781
SsiI CCGC 6 cut(s) 67, 209, 316, 537, 666, 1010
StyI CCWWGG 1 cut(s) 97
TaqI TCGA 1 cut(s) 1174
TatI WGTACW 4 cut(s) 440, 560, 689, 830
TauI GCSGC 1 cut(s) 318
TfiI GAWTC 4 cut(s) 91, 604, 745, 937
TscAI CASTG 4 cut(s) 76, 166, 884, 1024
TseFI GTSAC 3 cut(s) 103, 188, 196
TseI GCWGC 7 cut(s) 176, 219, 298, 1004, 1022, 1055, 1076
Tsp45I GTSAC 3 cut(s) 103, 188, 196
TspDTI ATGAA 4 cut(s) 413, 533, 662, 803
TspGWI ACGGA 1 cut(s) 147
TspRI CASTG 4 cut(s) 76, 166, 884, 1024
VpaK11BI GGWCC 4 cut(s) 391, 511, 640, 781
ZrmI AGTACT 4 cut(s) 442, 562, 691, 832
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.