Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005695

Physical Location & Seq

Genomic Coordinates Reverse (-)

18614112 .. 18616489

Gene Structure 2378 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G50210.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 999 bp

ATGGCGACGGACTTCAAGTCTTTACCAGTCATCGACATCTCTCGTTTACTCCTCAAGTGTGATGATCCCGACATGGCAGAGGATGTCGGTGTGGCCGAGGTTGTCCAGCAACTGGATAAAGCTTGTCGGGACGCCGGATTCTTCTACGTGATAGGCCATGGAATATCAGAGGATGTTATTAACAAGGTTAGAGAGATCACTCGTGAGTTCTTTAAGCTTCCTTATGAAGAGAAACTTAAAATCAAAATGACTCCAGCTGCTGGATACAGAGGATATCAGAGAATTGGAGAAAATGTGACCAAAGGAATACCAGATATTCATGAAGCCATTGATTGTTACAGAGAGATTAAGCAGGGGAAGTATGGGGATATAGGCAAAGTTATGGAAGGGCCAAACCAGTGGCCAGAGAATCCTCAGGAGTTTAAAGAGTTGATGGAGGAGTATATTAAGCTATGTACAGATCTTTCTAGAAAGATTTTGAGAGGAATCTCCTTAGCTCTTGCTGGATCACCTTATGAGTTCGAGGGAAAGATGGCTGGTGATCCTTTTTGGGTGATGCGTCTTATTGGTTATCCAGGTGCTGAGTTCACAAATGGCCAACCTGAAAATGATATTGGATGTGGAGCTCACACTGACTATGGCTTGTTAACTCTTGTGAATCAAGATGATGACAAAACTGCTCTTCAGGTGAGAAACTTGGGCGGTGAGTGGATATCAGCCATTCCAATCCCTGGATCGTTTGTTTGCAACATCGGTGACATGTTAAAGATACTTTCAAACGGAGTATACGAATCCACACTTCATAGAGTGATCAATAACTCTCCTCAATACCGTGTTTGTGTCGCATTCTTCTATGAGACTAACTTCGACGCGGTGGTGGAGCCATTGGATATATGTAAACAGAAGTACCCGGGAGGGAGAGGAGGATGCCAAGTTTTCAAAAGAGCTGTGTATGGAGAGCATCTCGTAAGTAAAGTCCAGACCAACTTTGCTATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006950 GO:0007154 GO:0008150 GO:0009267 GO:0009605 GO:0009987 GO:0009991 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0042594 GO:0050896 GO:0051716 GO:0071496

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

332

Amino Acids

37.22

Weight (kDa)

5.16

Isoelectric Point (pI)

22.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	8 - 137	7.6e-33	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	199 - 286	8.2e-21	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005695)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49620 AT3G49630 AT3G49630 AT3G49630 AT3G50210 AT3G50210 AT3G50210 AT3G50210
fragaria_vesca	FvH4_1g16460 FvH4_1g16460 FvH4_1g16460 FvH4_1g16460
malus_domestica	MD02G1177200.v1.1
prunus_persica	Prupe.6G230800_v2.0.a1 Prupe.6G230800_v2.0.a1
pyrus_communis	pycom02g14320
rosa_chinensis	RchiOBHm_Chr2g0106331 RchiOBHm_Chr2g0106341
rosa_laevigata	RLG00000017490
rosa_multiflora	Rmu_sc0010122.1_g000005
rosa_roxburghii	Rroxscaffold_2G00137270
rosa_rugosa	Rorug02G0134700 Rorug02G0134800
rosa_samantha	Rh2AG185900 Rh2BG196100 Rh2CG190900 Rh2DG192000
rosa_wichuraiana	Rw2G014490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	3 cut(s)	112, 260, 731
AccI	GTMKAC	1 cut(s)	786
AccII	CGCG	1 cut(s)	872
AciI	CCGC	2 cut(s)	702, 872
AclWI	GGATC	4 cut(s)	59, 514, 536, 742
AcoI	YGGCCR	3 cut(s)	93, 401, 595
AcuI	CTGAAG	1 cut(s)	668
AcyI	GRCGYC	1 cut(s)	132
AfaI	GTAC	2 cut(s)	457, 908
AfiI	CCNNNNNNNGG	3 cut(s)	112, 260, 731
AflIII	ACRYGT	1 cut(s)	759
AgsI	TTSAA	3 cut(s)	16, 777, 940
AhdI	GACNNNNNGTC	1 cut(s)	16
AjnI	CCWGG	2 cut(s)	574, 730
AjuI	GAANNNNNNNTTGG	2 cut(s)	597, 629
AluBI	AGCT	7 cut(s)	122, 217, 257, 451, 497, 626, 947
AluI	AGCT	7 cut(s)	122, 217, 257, 451, 497, 626, 947
Alw21I	GWGCWC	1 cut(s)	628
Alw26I	GTCTC	1 cut(s)	851
AlwI	GGATC	4 cut(s)	59, 514, 536, 742
AlwNI	CAGNNNCTG	3 cut(s)	112, 260, 581
Ama87I	CYCGRG	1 cut(s)	910
AoxI	GGCC	5 cut(s)	93, 154, 389, 401, 595
ApeKI	GCWGC	1 cut(s)	257
AspS9I	GGNCC	1 cut(s)	389
AsuC2I	CCSGG	2 cut(s)	911, 912
AsuHPI	GGTGA	6 cut(s)	501, 551, 565, 700, 716, 767
AvaI	CYCGRG	1 cut(s)	910
AxyI	CCTNAGG	1 cut(s)	414
BaeI	ACNNNNGTAYC	2 cut(s)	890, 923
BalI	TGGCCA	2 cut(s)	403, 597
BanII	GRGCYC	1 cut(s)	628
BauI	CACGAG	1 cut(s)	201
Bbv12I	GWGCWC	1 cut(s)	628
BbvI	GCAGC	1 cut(s)	244
BccI	CCATC	2 cut(s)	427, 526
BciT130I	CCWGG	2 cut(s)	576, 732
BciVI	GTATCC	1 cut(s)	257
BclI	TGATCA	1 cut(s)	810
BcnI	CCSGG	2 cut(s)	911, 912
BcoDI	GTCTC	1 cut(s)	851
BfaI	CTAG	1 cut(s)	468
BfuI	GTATCC	1 cut(s)	257
BglII	AGATCT	1 cut(s)	460
BisI	GCNGC	1 cut(s)	258
BlsI	GCNGC	1 cut(s)	259
Bme1390I	CCNGG	4 cut(s)	576, 732, 911, 912
BmeRI	GACNNNNNGTC	1 cut(s)	16
BmeT110I	CYCGRG	1 cut(s)	910
BmgT120I	GGNCC	1 cut(s)	389
BmiI	GGNNCC	1 cut(s)	882
BmrFI	CCNGG	4 cut(s)	576, 732, 911, 912
BmsI	GCATC	3 cut(s)	546, 917, 970
BplI	GAGNNNNNCTC	2 cut(s)	948, 980
BpmI	CTGGAG	1 cut(s)	237
Bpu10I	CCTNAGC	1 cut(s)	493
BpuEI	CTTGAG	1 cut(s)	38
BpuMI	CCSGG	2 cut(s)	911, 912
BsaAI	YACGTR	1 cut(s)	148
BsaHI	GRCGYC	1 cut(s)	132
BsaJI	CCNNGG	4 cut(s)	96, 157, 730, 910
BsaXI	ACNNNNNCTCC	2 cut(s)	279, 309
Bsc4I	CCNNNNNNNGG	3 cut(s)	112, 260, 731
Bse1I	ACTGG	3 cut(s)	26, 117, 397
Bse21I	CCTNAGG	1 cut(s)	414
BseBI	CCWGG	2 cut(s)	576, 732
BseDI	CCNNGG	4 cut(s)	96, 157, 730, 910
BseGI	GGATG	4 cut(s)	88, 178, 623, 932
BseLI	CCNNNNNNNGG	3 cut(s)	112, 260, 731
BseMII	CTCAG	2 cut(s)	428, 573
BseNI	ACTGG	3 cut(s)	26, 117, 397
BseRI	GAGGAG	4 cut(s)	41, 452, 813, 936
BseXI	GCAGC	1 cut(s)	244
Bsh1236I	CGCG	1 cut(s)	872
BshFI	GGCC	5 cut(s)	95, 156, 391, 403, 597
BsiHKAI	GWGCWC	1 cut(s)	628
BsiHKCI	CYCGRG	1 cut(s)	910
BsiSI	CCGG	2 cut(s)	135, 911
BslFI	GGGAC	1 cut(s)	143
BslI	CCNNNNNNNGG	3 cut(s)	112, 260, 731
BsmAI	GTCTC	1 cut(s)	851
BsmFI	GGGAC	1 cut(s)	143
BsmI	GAATGC	1 cut(s)	845
BsnI	GGCC	5 cut(s)	95, 156, 391, 403, 597
BsoBI	CYCGRG	1 cut(s)	910
Bsp1286I	GDGCHC	1 cut(s)	628
Bsp1407I	TGTACA	1 cut(s)	455
Bsp143I	GATC	7 cut(s)	64, 195, 460, 506, 541, 734, 810
Bsp19I	CCATGG	1 cut(s)	157
BspACI	CCGC	2 cut(s)	702, 872
BspANI	GGCC	5 cut(s)	95, 156, 391, 403, 597
BspCNI	CTCAG	2 cut(s)	427, 574
BspFNI	CGCG	1 cut(s)	872
BspHI	TCATGA	1 cut(s)	319
BspLI	GGNNCC	1 cut(s)	882
BspPI	GGATC	4 cut(s)	59, 514, 536, 742
BspQI	GCTCTTC	1 cut(s)	687
BsrGI	TGTACA	1 cut(s)	455
BsrI	ACTGG	3 cut(s)	26, 117, 397
BssECI	CCNNGG	4 cut(s)	96, 157, 730, 910
BssMI	GATC	7 cut(s)	64, 195, 460, 506, 541, 734, 810
BssNAI	GTATAC	1 cut(s)	787
BssNI	GRCGYC	1 cut(s)	132
BssSI	CACGAG	1 cut(s)	201
BssT1I	CCWWGG	1 cut(s)	157
Bst1107I	GTATAC	1 cut(s)	787
Bst2BI	CACGAG	1 cut(s)	201
Bst2UI	CCWGG	2 cut(s)	576, 732
Bst4CI	ACNGT	1 cut(s)	833
Bst6I	CTCTTC	2 cut(s)	222, 687
BstACI	GRCGYC	1 cut(s)	132
BstAUI	TGTACA	1 cut(s)	455
BstBAI	YACGTR	1 cut(s)	148
BstDEI	CTNAG	3 cut(s)	414, 493, 582
BstDSI	CCRYGG	1 cut(s)	157
BstF5I	GGATG	4 cut(s)	88, 178, 623, 932
BstFNI	CGCG	1 cut(s)	872
BstKTI	GATC	7 cut(s)	67, 198, 463, 509, 544, 737, 813
BstMAI	GTCTC	1 cut(s)	851
BstMBI	GATC	7 cut(s)	64, 195, 460, 506, 541, 734, 810
BstNI	CCWGG	2 cut(s)	576, 732
BstNSI	RCATGY	1 cut(s)	763
BstSCI	CCNGG	4 cut(s)	574, 730, 909, 910
BstUI	CGCG	1 cut(s)	872
BstV1I	GCAGC	1 cut(s)	244
BstX2I	RGATCY	1 cut(s)	460
BstXI	CCANNNNNNTGG	1 cut(s)	399
BstYI	RGATCY	1 cut(s)	460
BstZ17I	GTATAC	1 cut(s)	787
Bsu36I	CCTNAGG	1 cut(s)	414
BsuI	GTATCC	1 cut(s)	257
BsuRI	GGCC	5 cut(s)	95, 156, 391, 403, 597
BtgI	CCRYGG	1 cut(s)	157
BtsCI	GGATG	4 cut(s)	88, 178, 623, 932
BtsIMutI	CAGTG	2 cut(s)	404, 630
CaiI	CAGNNNCTG	3 cut(s)	112, 260, 581
CciI	TCATGA	1 cut(s)	319
Cfr13I	GGNCC	1 cut(s)	389
Cfr9I	CCCGGG	1 cut(s)	910
CseI	GACGC	3 cut(s)	140, 548, 878
Csp6I	GTAC	2 cut(s)	456, 907
CviAII	CATG	4 cut(s)	73, 158, 320, 760
CviQI	GTAC	2 cut(s)	456, 907
DdeI	CTNAG	3 cut(s)	414, 493, 582
DpnI	GATC	7 cut(s)	66, 197, 462, 508, 543, 736, 812
DpnII	GATC	7 cut(s)	64, 195, 460, 506, 541, 734, 810
DraI	TTTAAA	1 cut(s)	424
DriI	GACNNNNNGTC	1 cut(s)	16
EaeI	YGGCCR	3 cut(s)	93, 401, 595
Eam1104I	CTCTTC	2 cut(s)	222, 687
Eam1105I	GACNNNNNGTC	1 cut(s)	16
EarI	CTCTTC	2 cut(s)	222, 687
Ecl136II	GAGCTC	1 cut(s)	626
Eco130I	CCWWGG	1 cut(s)	157
Eco24I	GRGCYC	1 cut(s)	628
Eco32I	GATATC	2 cut(s)	275, 714
Eco53kI	GAGCTC	1 cut(s)	626
Eco57I	CTGAAG	1 cut(s)	668
Eco81I	CCTNAGG	1 cut(s)	414
Eco88I	CYCGRG	1 cut(s)	910
EcoICRI	GAGCTC	1 cut(s)	626
EcoRII	CCWGG	2 cut(s)	574, 730
EcoRV	GATATC	2 cut(s)	275, 714
EcoT14I	CCWWGG	1 cut(s)	157
EcoT38I	GRGCYC	1 cut(s)	628
ErhI	CCWWGG	1 cut(s)	157
FaeI	CATG	4 cut(s)	76, 161, 323, 763
FalI	AAGNNNNNCTT	2 cut(s)	219, 251
FaqI	GGGAC	1 cut(s)	143
FatI	CATG	4 cut(s)	72, 157, 319, 759
FbaI	TGATCA	1 cut(s)	810
FblI	GTMKAC	1 cut(s)	786
Fnu4HI	GCNGC	1 cut(s)	258
FokI	GGATG	4 cut(s)	95, 185, 630, 939
FriOI	GRGCYC	1 cut(s)	628
Fsp4HI	GCNGC	1 cut(s)	258
FspBI	CTAG	1 cut(s)	468
GluI	GCNGC	1 cut(s)	258
GsuI	CTGGAG	1 cut(s)	237
HaeIII	GGCC	5 cut(s)	95, 156, 391, 403, 597
HapII	CCGG	2 cut(s)	135, 911
HgaI	GACGC	3 cut(s)	140, 548, 878
Hin1I	GRCGYC	1 cut(s)	132
Hin1II	CATG	4 cut(s)	76, 161, 323, 763
HincII	GTYRAC	1 cut(s)	648
HindII	GTYRAC	1 cut(s)	648
HindIII	AAGCTT	2 cut(s)	120, 215
HinfI	GANTC	6 cut(s)	138, 250, 409, 486, 658, 791
HpaI	GTTAAC	1 cut(s)	648
HpaII	CCGG	2 cut(s)	135, 911
HphI	GGTGA	6 cut(s)	501, 551, 565, 700, 716, 767
Hpy166II	GTNNAC	5 cut(s)	47, 588, 648, 787, 899
Hpy188I	TCNGA	2 cut(s)	169, 279
Hpy188III	TCNNGA	8 cut(s)	68, 128, 203, 320, 416, 468, 662, 979
Hpy8I	GTNNAC	5 cut(s)	47, 588, 648, 787, 899
Hpy99I	CGWCG	2 cut(s)	10, 872
HpyAV	CCTTC	1 cut(s)	380
HpyCH4III	ACNGT	1 cut(s)	833
HpyCH4IV	ACGT	1 cut(s)	147
HpyCH4V	TGCA	1 cut(s)	747
HpyF3I	CTNAG	3 cut(s)	414, 493, 582
HpySE526I	ACGT	1 cut(s)	147
Hsp92I	GRCGYC	1 cut(s)	132
Hsp92II	CATG	4 cut(s)	76, 161, 323, 763
Ksp22I	TGATCA	1 cut(s)	810
KspAI	GTTAAC	1 cut(s)	648
Kzo9I	GATC	7 cut(s)	64, 195, 460, 506, 541, 734, 810
LguI	GCTCTTC	1 cut(s)	687
LmnI	GCTCC	2 cut(s)	623, 880
Lsp1109I	GCAGC	1 cut(s)	244
LweI	GCATC	3 cut(s)	546, 917, 970
MaeI	CTAG	1 cut(s)	468
MaeII	ACGT	1 cut(s)	147
MaeIII	GTNAC	3 cut(s)	295, 335, 755
MalI	GATC	7 cut(s)	66, 197, 462, 508, 543, 736, 812
MboI	GATC	7 cut(s)	64, 195, 460, 506, 541, 734, 810
MboII	GAAGA	4 cut(s)	133, 239, 674, 841
MflI	RGATCY	1 cut(s)	460
MhlI	GDGCHC	1 cut(s)	628
MlsI	TGGCCA	2 cut(s)	403, 597
MluCI	AATT	1 cut(s)	282
MluNI	TGGCCA	2 cut(s)	403, 597
MlyI	GAGTC	1 cut(s)	244
Mox20I	TGGCCA	2 cut(s)	403, 597
MscI	TGGCCA	2 cut(s)	403, 597
MseI	TTAA	8 cut(s)	180, 213, 237, 348, 423, 447, 647, 764
Msp20I	TGGCCA	2 cut(s)	403, 597
MspA1I	CMGCKG	1 cut(s)	257
MspI	CCGG	2 cut(s)	135, 911
MspR9I	CCNGG	4 cut(s)	576, 732, 911, 912
Mva1269I	GAATGC	1 cut(s)	845
MvaI	CCWGG	2 cut(s)	576, 732
MvnI	CGCG	1 cut(s)	872
NciI	CCSGG	2 cut(s)	911, 912
NcoI	CCATGG	1 cut(s)	157
NdeII	GATC	7 cut(s)	64, 195, 460, 506, 541, 734, 810
NlaIII	CATG	4 cut(s)	76, 161, 323, 763
NlaIV	GGNNCC	1 cut(s)	882
NmeAIII	GCCGAG	1 cut(s)	121
NmuCI	GTSAC	2 cut(s)	295, 755
NspI	RCATGY	1 cut(s)	763
PagI	TCATGA	1 cut(s)	319
PciI	ACATGT	1 cut(s)	759
PciSI	GCTCTTC	1 cut(s)	687
PcsI	WCGNNNNNNNCGW	2 cut(s)	93, 786
PctI	GAATGC	1 cut(s)	845
PfeI	GAWTC	5 cut(s)	138, 409, 486, 658, 791
PflMI	CCANNNNNTGG	3 cut(s)	112, 260, 731
PkrI	GCNGC	1 cut(s)	259
PleI	GAGTC	1 cut(s)	244
PpsI	GAGTC	1 cut(s)	244
Ppu21I	YACGTR	1 cut(s)	148
PscI	ACATGT	1 cut(s)	759
Psp124BI	GAGCTC	1 cut(s)	628
Psp6I	CCWGG	2 cut(s)	574, 730
PspGI	CCWGG	2 cut(s)	574, 730
PspN4I	GGNNCC	1 cut(s)	882
PspPI	GGNCC	1 cut(s)	389
PstNI	CAGNNNCTG	3 cut(s)	112, 260, 581
PsuI	RGATCY	1 cut(s)	460
PvuII	CAGCTG	1 cut(s)	257
RsaI	GTAC	2 cut(s)	457, 908
RsaNI	GTAC	2 cut(s)	456, 907
SacI	GAGCTC	1 cut(s)	628
SapI	GCTCTTC	1 cut(s)	687
SaqAI	TTAA	8 cut(s)	180, 213, 237, 348, 423, 447, 647, 764
SatI	GCNGC	1 cut(s)	258
Sau3AI	GATC	7 cut(s)	64, 195, 460, 506, 541, 734, 810
Sau96I	GGNCC	1 cut(s)	389
SchI	GAGTC	1 cut(s)	244
ScrFI	CCNGG	4 cut(s)	576, 732, 911, 912
SduI	GDGCHC	1 cut(s)	628
SfaNI	GCATC	3 cut(s)	546, 917, 970
SmaI	CCCGGG	1 cut(s)	912
SmlI	CTYRAG	1 cut(s)	53
SmoI	CTYRAG	1 cut(s)	53
Sse9I	AATT	1 cut(s)	282
SsiI	CCGC	2 cut(s)	702, 872
SspMI	CTAG	1 cut(s)	468
SstI	GAGCTC	1 cut(s)	628
StyD4I	CCNGG	4 cut(s)	574, 730, 909, 910
StyI	CCWWGG	1 cut(s)	157
TaaI	ACNGT	1 cut(s)	833
TaiI	ACGT	1 cut(s)	150
TaqI	TCGA	3 cut(s)	33, 522, 867
TasI	AATT	1 cut(s)	282
TatI	WGTACW	1 cut(s)	455
TfiI	GAWTC	5 cut(s)	138, 409, 486, 658, 791
Tru1I	TTAA	8 cut(s)	180, 213, 237, 348, 423, 447, 647, 764
Tru9I	TTAA	8 cut(s)	180, 213, 237, 348, 423, 447, 647, 764
TscAI	CASTG	2 cut(s)	404, 637
TseFI	GTSAC	2 cut(s)	295, 755
TseI	GCWGC	1 cut(s)	257
Tsp45I	GTSAC	2 cut(s)	295, 755
TspDTI	ATGAA	4 cut(s)	240, 308, 336, 791
TspGWI	ACGGA	2 cut(s)	23, 795
TspMI	CCCGGG	1 cut(s)	910
TspRI	CASTG	2 cut(s)	404, 637
Van91I	CCANNNNNTGG	3 cut(s)	112, 260, 731
XbaI	TCTAGA	1 cut(s)	467
XceI	RCATGY	1 cut(s)	763
XmaI	CCCGGG	1 cut(s)	910
XmiI	GTMKAC	1 cut(s)	786
XspI	CTAG	1 cut(s)	468

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.