Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0005695

Physical Location & Seq

Genomic Coordinates Forward (+)

16313013 .. 16315418

Gene Structure 2406 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G014490.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 918 bp

ATGGCCACTGACTTCAAGTCCATACCCATAATTGATATTGGTCCTCTTCTGGCCAAGTGTGATGATCCCAAAATGGGTCAAGACCCAGGTGTTGCTCATGTAGTCAAGCAATTAGATCAAGCTTGTAAAGAAGCAGGCTTCTTCTATGTGAAAGGCCATGGTGTTCCTGAGACTCTGTTAAAAGAGGTCAAGAATCTGACCCGCAAGTTCTTTGAACTTCCATATGAGGAAAAAAGAATTGGGGAGAATATAACCAAAGGTGTACCAGACATACATGAAGCAATTGATTGCTATAAAGAAGTGAAACCAGGAATGTACGGAGATCTTGGAAAACCTATGGAAGGATGTAACCAATGGCCAACTAATCCCCCAAACTTCAAGCTACTGATGGAGGAATATATCAGCCTCTGCACAGAACTTTCAAAAAATATCATGCGTGGAATTGCTTTAGCATTGGGTGGATCTCCATATGAATTTGAAGGTGAAAGAGCTGGAGACGCATTTTGGGTGATGCGTCTCATTGGTTACCCAGAGTTACACAATGACATTGGATGTGGAGCTCACACGGATTATGGTTTGCTGACTCTGGTTAATCAGGATGATGATATAAATGCACTTCAGGTGAGAAACCTGTCGGGCGAGTGGATATCAGCACCTCCTGTTCCCGGCACATTCGTCTGCAATATCGGAGACATGCTAAAGATTTACTCGAGTGGTTTGTATGAGTCAACTTTGCATCAAGTTATCAACTCTTCCCCGAAATACAGGGTTTGTGTAGCATATTTCTATGAGACCAACTTTGATACAGCAGTGGAGCCTTTGGACATTTGCAAACAGAAGACAGGTGGAGCTAAGAAATTTGAAAGAGCTGTATATGGAGAGCATTTAGTCAGCAAGGTTCAAACAAATTTCGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006950 GO:0007154 GO:0008150 GO:0009267 GO:0009605 GO:0009987 GO:0009991 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0042594 GO:0050896 GO:0051716 GO:0071496

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

305

Amino Acids

33.99

Weight (kDa)

5.26

Isoelectric Point (pI)

26.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	8 - 122	2.1e-20	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	177 - 264	3e-19	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005695)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49620 AT3G49630 AT3G49630 AT3G49630 AT3G50210 AT3G50210 AT3G50210 AT3G50210
fragaria_vesca	FvH4_1g16460 FvH4_1g16460 FvH4_1g16460 FvH4_1g16460
malus_domestica	MD02G1177200.v1.1
prunus_persica	Prupe.6G230800_v2.0.a1 Prupe.6G230800_v2.0.a1
pyrus_communis	pycom02g14320
rosa_chinensis	RchiOBHm_Chr2g0106331 RchiOBHm_Chr2g0106341
rosa_laevigata	RLG00000017490
rosa_multiflora	Rmu_sc0010122.1_g000005
rosa_roxburghii	Rroxscaffold_2G00137270
rosa_rugosa	Rorug02G0134700 Rorug02G0134800
rosa_samantha	Rh2AG185900 Rh2BG196100 Rh2CG190900 Rh2DG192000
rosa_wichuraiana	Rw2G014490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	202
AclWI	GGATC	2 cut(s)	59, 469
AcoI	YGGCCR	3 cut(s)	3, 51, 356
AcsI	RAATTY	3 cut(s)	473, 857, 907
AcuI	CTGAAG	1 cut(s)	602
AfaI	GTAC	2 cut(s)	264, 317
AfiI	CCNNNNNNNGG	3 cut(s)	74, 341, 665
AgsI	TTSAA	7 cut(s)	16, 215, 379, 423, 479, 863, 902
AhdI	GACNNNNNGTC	1 cut(s)	16
AjnI	CCWGG	2 cut(s)	85, 307
AjuI	GAANNNNNNNTTGG	2 cut(s)	222, 254
AluBI	AGCT	6 cut(s)	122, 382, 491, 560, 851, 869
AluI	AGCT	6 cut(s)	122, 382, 491, 560, 851, 869
Alw21I	GWGCWC	1 cut(s)	562
Alw26I	GTCTC	5 cut(s)	164, 489, 521, 684, 785
AlwI	GGATC	2 cut(s)	59, 469
AlwNI	CAGNNNCTG	1 cut(s)	408
Ama87I	CYCGRG	1 cut(s)	709
AoxI	GGCC	4 cut(s)	3, 51, 154, 356
ApoI	RAATTY	3 cut(s)	473, 857, 907
AspS9I	GGNCC	1 cut(s)	41
AsuC2I	CCSGG	1 cut(s)	666
AsuHPI	GGTGA	3 cut(s)	494, 520, 634
AvaI	CYCGRG	1 cut(s)	709
AvaII	GGWCC	1 cut(s)	41
BaeI	ACNNNNGTAYC	2 cut(s)	795, 828
BalI	TGGCCA	3 cut(s)	5, 53, 358
BanII	GRGCYC	1 cut(s)	562
BbsI	GAAGAC	1 cut(s)	845
Bbv12I	GWGCWC	1 cut(s)	562
BccI	CCATC	1 cut(s)	382
BciT130I	CCWGG	2 cut(s)	87, 309
BcnI	CCSGG	1 cut(s)	666
BcoDI	GTCTC	5 cut(s)	164, 489, 521, 684, 785
BglII	AGATCT	1 cut(s)	322
Bme1390I	CCNGG	3 cut(s)	87, 309, 666
Bme18I	GGWCC	1 cut(s)	41
BmeRI	GACNNNNNGTC	1 cut(s)	16
BmeT110I	CYCGRG	1 cut(s)	709
BmgT120I	GGNCC	1 cut(s)	41
BmiI	GGNNCC	1 cut(s)	816
BmrFI	CCNGG	3 cut(s)	87, 309, 666
BmsI	GCATC	2 cut(s)	501, 745
BpiI	GAAGAC	1 cut(s)	845
BpmI	CTGGAG	1 cut(s)	513
BpuMI	CCSGG	1 cut(s)	666
BsaI	GGTCTC	1 cut(s)	785
BsaJI	CCNNGG	2 cut(s)	85, 157
Bsc4I	CCNNNNNNNGG	3 cut(s)	74, 341, 665
BseBI	CCWGG	2 cut(s)	87, 309
BseDI	CCNNGG	2 cut(s)	85, 157
BseGI	GGATG	3 cut(s)	350, 557, 604
BseLI	CCNNNNNNNGG	3 cut(s)	74, 341, 665
BseMII	CTCAG	1 cut(s)	159
BsgI	GTGCAG	1 cut(s)	394
BshFI	GGCC	4 cut(s)	5, 53, 156, 358
BsiHKAI	GWGCWC	1 cut(s)	562
BsiHKCI	CYCGRG	1 cut(s)	709
BsiSI	CCGG	1 cut(s)	666
BslI	CCNNNNNNNGG	3 cut(s)	74, 341, 665
BsmAI	GTCTC	5 cut(s)	164, 489, 521, 684, 785
BsmBI	CGTCTC	2 cut(s)	489, 521
BsnI	GGCC	4 cut(s)	5, 53, 156, 358
Bso31I	GGTCTC	1 cut(s)	785
BsoBI	CYCGRG	1 cut(s)	709
Bsp1286I	GDGCHC	1 cut(s)	562
Bsp143I	GATC	4 cut(s)	64, 115, 322, 461
Bsp19I	CCATGG	1 cut(s)	157
BspACI	CCGC	1 cut(s)	202
BspANI	GGCC	4 cut(s)	5, 53, 156, 358
BspCNI	CTCAG	1 cut(s)	160
BspLI	GGNNCC	1 cut(s)	816
BspPI	GGATC	2 cut(s)	59, 469
BspTNI	GGTCTC	1 cut(s)	785
BssECI	CCNNGG	2 cut(s)	85, 157
BssMI	GATC	4 cut(s)	64, 115, 322, 461
BssT1I	CCWWGG	1 cut(s)	157
Bst2UI	CCWGG	2 cut(s)	87, 309
Bst6I	CTCTTC	2 cut(s)	51, 757
BstC8I	GCNNGC	1 cut(s)	136
BstDEI	CTNAG	2 cut(s)	168, 852
BstDSI	CCRYGG	1 cut(s)	157
BstEII	GGTNACC	1 cut(s)	524
BstENI	CCTNNNNNAGG	1 cut(s)	339
BstF5I	GGATG	3 cut(s)	350, 557, 604
BstKTI	GATC	4 cut(s)	67, 118, 325, 464
BstMAI	GTCTC	5 cut(s)	164, 489, 521, 684, 785
BstMBI	GATC	4 cut(s)	64, 115, 322, 461
BstMWI	GCNNNNNNNGC	1 cut(s)	497
BstNI	CCWGG	2 cut(s)	87, 309
BstNSI	RCATGY	1 cut(s)	697
BstPI	GGTNACC	1 cut(s)	524
BstSCI	CCNGG	3 cut(s)	85, 307, 664
BstV2I	GAAGAC	1 cut(s)	845
BstX2I	RGATCY	2 cut(s)	322, 461
BstYI	RGATCY	2 cut(s)	322, 461
BsuRI	GGCC	4 cut(s)	5, 53, 156, 358
BtgI	CCRYGG	1 cut(s)	157
BtsCI	GGATG	3 cut(s)	350, 557, 604
BtsI	GCAGTG	1 cut(s)	816
BtsIMutI	CAGTG	2 cut(s)	6, 816
Cac8I	GCNNGC	1 cut(s)	136
CaiI	CAGNNNCTG	1 cut(s)	408
Cfr13I	GGNCC	1 cut(s)	41
CseI	GACGC	2 cut(s)	503, 506
Csp6I	GTAC	2 cut(s)	263, 316
CviAII	CATG	5 cut(s)	98, 158, 275, 433, 694
CviQI	GTAC	2 cut(s)	263, 316
DdeI	CTNAG	2 cut(s)	168, 852
DpnI	GATC	4 cut(s)	66, 117, 324, 463
DpnII	GATC	4 cut(s)	64, 115, 322, 461
DriI	GACNNNNNGTC	1 cut(s)	16
EaeI	YGGCCR	3 cut(s)	3, 51, 356
Eam1104I	CTCTTC	2 cut(s)	51, 757
Eam1105I	GACNNNNNGTC	1 cut(s)	16
EarI	CTCTTC	2 cut(s)	51, 757
Ecl136II	GAGCTC	1 cut(s)	560
Eco130I	CCWWGG	1 cut(s)	157
Eco24I	GRGCYC	1 cut(s)	562
Eco31I	GGTCTC	1 cut(s)	785
Eco32I	GATATC	1 cut(s)	648
Eco47I	GGWCC	1 cut(s)	41
Eco53kI	GAGCTC	1 cut(s)	560
Eco57I	CTGAAG	1 cut(s)	602
Eco88I	CYCGRG	1 cut(s)	709
Eco91I	GGTNACC	1 cut(s)	524
EcoICRI	GAGCTC	1 cut(s)	560
EcoNI	CCTNNNNNAGG	1 cut(s)	339
EcoO65I	GGTNACC	1 cut(s)	524
EcoRII	CCWGG	2 cut(s)	85, 307
EcoRV	GATATC	1 cut(s)	648
EcoT14I	CCWWGG	1 cut(s)	157
EcoT38I	GRGCYC	1 cut(s)	562
ErhI	CCWWGG	1 cut(s)	157
Esp3I	CGTCTC	2 cut(s)	489, 521
FaeI	CATG	5 cut(s)	101, 161, 278, 436, 697
FatI	CATG	5 cut(s)	97, 157, 274, 432, 693
FauI	CCCGC	1 cut(s)	209
FauNDI	CATATG	2 cut(s)	223, 469
FokI	GGATG	3 cut(s)	357, 564, 611
FriOI	GRGCYC	1 cut(s)	562
GsuI	CTGGAG	1 cut(s)	513
HaeIII	GGCC	4 cut(s)	5, 53, 156, 358
HapII	CCGG	1 cut(s)	666
HgaI	GACGC	2 cut(s)	503, 506
Hin1II	CATG	5 cut(s)	101, 161, 278, 436, 697
HincII	GTYRAC	1 cut(s)	729
HindII	GTYRAC	1 cut(s)	729
HindIII	AAGCTT	1 cut(s)	120
HinfI	GANTC	4 cut(s)	172, 193, 583, 725
HpaII	CCGG	1 cut(s)	666
HphI	GGTGA	3 cut(s)	494, 520, 634
Hpy166II	GTNNAC	2 cut(s)	263, 729
Hpy188I	TCNGA	2 cut(s)	198, 689
Hpy188III	TCNNGA	4 cut(s)	80, 167, 190, 596
Hpy8I	GTNNAC	2 cut(s)	263, 729
HpyAV	CCTTC	2 cut(s)	335, 473
HpyCH4V	TGCA	5 cut(s)	411, 614, 681, 736, 831
HpyF10VI	GCNNNNNNNGC	1 cut(s)	497
HpyF3I	CTNAG	2 cut(s)	168, 852
Hsp92II	CATG	5 cut(s)	101, 161, 278, 436, 697
Kzo9I	GATC	4 cut(s)	64, 115, 322, 461
LmnI	GCTCC	3 cut(s)	557, 814, 848
LweI	GCATC	2 cut(s)	501, 745
MaeIII	GTNAC	3 cut(s)	347, 524, 534
MalI	GATC	4 cut(s)	66, 117, 324, 463
MboI	GATC	4 cut(s)	64, 115, 322, 461
MboII	GAAGA	4 cut(s)	38, 133, 744, 850
MfeI	CAATTG	1 cut(s)	282
MflI	RGATCY	2 cut(s)	322, 461
MhlI	GDGCHC	1 cut(s)	562
MlsI	TGGCCA	3 cut(s)	5, 53, 358
MluCI	AATT	8 cut(s)	30, 110, 237, 282, 441, 473, 857, 907
MluNI	TGGCCA	3 cut(s)	5, 53, 358
MlyI	GAGTC	3 cut(s)	166, 577, 734
MnlI	CCTC	6 cut(s)	54, 178, 220, 385, 416, 666
Mox20I	TGGCCA	3 cut(s)	5, 53, 358
MscI	TGGCCA	3 cut(s)	5, 53, 358
MseI	TTAA	2 cut(s)	179, 591
Msp20I	TGGCCA	3 cut(s)	5, 53, 358
MspI	CCGG	1 cut(s)	666
MspR9I	CCNGG	3 cut(s)	87, 309, 666
MunI	CAATTG	1 cut(s)	282
MvaI	CCWGG	2 cut(s)	87, 309
MwoI	GCNNNNNNNGC	1 cut(s)	497
NciI	CCSGG	1 cut(s)	666
NcoI	CCATGG	1 cut(s)	157
NdeI	CATATG	2 cut(s)	223, 469
NdeII	GATC	4 cut(s)	64, 115, 322, 461
NlaIII	CATG	5 cut(s)	101, 161, 278, 436, 697
NlaIV	GGNNCC	1 cut(s)	816
NspI	RCATGY	1 cut(s)	697
PaeR7I	CTCGAG	1 cut(s)	709
PfeI	GAWTC	1 cut(s)	193
PleI	GAGTC	3 cut(s)	166, 577, 733
PpsI	GAGTC	3 cut(s)	166, 577, 733
Psp124BI	GAGCTC	1 cut(s)	562
Psp6I	CCWGG	2 cut(s)	85, 307
PspEI	GGTNACC	1 cut(s)	524
PspGI	CCWGG	2 cut(s)	85, 307
PspN4I	GGNNCC	1 cut(s)	816
PspPI	GGNCC	1 cut(s)	41
PspXI	VCTCGAGB	1 cut(s)	709
PstNI	CAGNNNCTG	1 cut(s)	408
PsuI	RGATCY	2 cut(s)	322, 461
RsaI	GTAC	2 cut(s)	264, 317
RsaNI	GTAC	2 cut(s)	263, 316
SacI	GAGCTC	1 cut(s)	562
SaqAI	TTAA	2 cut(s)	179, 591
Sau3AI	GATC	4 cut(s)	64, 115, 322, 461
Sau96I	GGNCC	1 cut(s)	41
SchI	GAGTC	3 cut(s)	166, 577, 734
ScrFI	CCNGG	3 cut(s)	87, 309, 666
SduI	GDGCHC	1 cut(s)	562
SfaNI	GCATC	2 cut(s)	501, 745
Sfr274I	CTCGAG	1 cut(s)	709
SinI	GGWCC	1 cut(s)	41
SlaI	CTCGAG	1 cut(s)	709
SmlI	CTYRAG	1 cut(s)	709
SmoI	CTYRAG	1 cut(s)	709
Sse9I	AATT	8 cut(s)	30, 110, 237, 282, 441, 473, 857, 907
SsiI	CCGC	1 cut(s)	202
SstI	GAGCTC	1 cut(s)	562
StyD4I	CCNGG	3 cut(s)	85, 307, 664
StyI	CCWWGG	1 cut(s)	157
TaqI	TCGA	1 cut(s)	710
TasI	AATT	8 cut(s)	30, 110, 237, 282, 441, 473, 857, 907
TfiI	GAWTC	1 cut(s)	193
Tru1I	TTAA	2 cut(s)	179, 591
Tru9I	TTAA	2 cut(s)	179, 591
TscAI	CASTG	2 cut(s)	13, 816
TspDTI	ATGAA	2 cut(s)	291, 486
TspGWI	ACGGA	2 cut(s)	333, 581
TspRI	CASTG	2 cut(s)	13, 816
VpaK11BI	GGWCC	1 cut(s)	41
XagI	CCTNNNNNAGG	1 cut(s)	339
XapI	RAATTY	3 cut(s)	473, 857, 907
XceI	RCATGY	1 cut(s)	697
XhoI	CTCGAG	1 cut(s)	709

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.