FvH4_1g16460

Belongs to the iron ascorbate-dependent oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0005695
Physical Location & Seq
Forward (+)
9491408 .. 9494572
3165 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g16460.t3

Sequence Viewer

Length: 966 bp
ATGGCCACAGACTTCAAGTCCATACCCATAATTGATATTGGTCCTCTTCTGGCCAAGTGTGATGATCCCAACATGGGTCAAGACCCAGGTGTTGCTCATGTAGTCAAGCAATTAGATCAAGCTTGTAAAGAAGCAGGCTTTTTCTATGTGAAAGGCCATGGTATTCCTGAGACTCTGTTAAAAGAAGTCAAGAATCTGACCCACAAATTCTTTGAGCTTCCATATGAGGAAAAAACCAAGATCAAGATGACTCCCGAAAAAGGGTACAGAGGGTATCAGAGAATTGGGGAGAACATAACCAAAGGTGTACCTGACATACATGAAGCAATTGATTGCTATAAAGAAGTGAAACCAGGGATGTATGGAGATCTTGGAAAACCTATGGAAGGATGTAACCAATGGCCAACTAATCCCCAAATGTTCAAGATACTGATGGAGGAATATATCAGCCTCTGCACAGAACTTTCGAAAAATATCATGCGTGGAATTGCTTTGGCATTGGGTGGATCACCGTACGAATTTGAAGGTAAAAGAGCTGGTGATGCATTTTGGGTGATGCGTCTCATTGGTTATCCAGAGTTATGCAATGACATTGGATGTGGAGCTCACACGGATTATGGTTTGCTGACATTGGTTAATCAGGATGATGATATAAATGCACTTCAGGTGAGAAACCTGTCGGGCGAGTGGATATCAGCACCTCCTGTCCCTGGAACATTCGTCTGCAATATCGGTGACATGCTAAAGATTTACTCGAATGGTTTGTATGAGTCAACTTTGCATCAAGTTATCAACTCTTCCCCGAAATACAGGGTTTGTGTAGCATATTTTTATGAGACCAACTTTGATACAGCAGTGGAGCCTTTGGACATTTGCAAACAGAAGACAGGTGGAACTAAGAAATTTGAAAGAGCTGTATATGGAGAGCATTTAGTCAGCAAGGTTCAAACAAATTTCGTTGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0006950 GO:0007154 GO:0008150 GO:0009267 GO:0009605 GO:0009987 GO:0009991 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0042594 GO:0050896 GO:0051716 GO:0071496
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2OG-FeII_Oxy DIOX_N

Protein Analysis

322

Amino Acids

35.93

Weight (kDa)

5.48

Isoelectric Point (pI)

22.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
2OG-FeII_Oxy PF03171 115 - 197 6.1e-20 2OG-Fe(II) oxygenase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 59, 514
AcoI YGGCCR 3 cut(s) 3, 51, 401
AcsI RAATTY 4 cut(s) 206, 518, 902, 952
AcuI CTGAAG 1 cut(s) 647
AfaI GTAC 3 cut(s) 266, 309, 515
AfiI CCNNNNNNNGG 5 cut(s) 74, 260, 261, 386, 710
AgsI TTSAA 5 cut(s) 16, 424, 524, 908, 947
AhdI GACNNNNNGTC 1 cut(s) 16
AjnI CCWGG 3 cut(s) 85, 352, 709
AluBI AGCT 5 cut(s) 122, 217, 536, 605, 914
AluI AGCT 5 cut(s) 122, 217, 536, 605, 914
Alw21I GWGCWC 1 cut(s) 607
Alw26I GTCTC 3 cut(s) 164, 566, 830
AlwI GGATC 2 cut(s) 59, 514
AlwNI CAGNNNCTG 1 cut(s) 453
AoxI GGCC 4 cut(s) 3, 51, 154, 401
ApoI RAATTY 4 cut(s) 206, 518, 902, 952
AspS9I GGNCC 1 cut(s) 41
AsuHPI GGTGA 5 cut(s) 501, 551, 565, 679, 746
AsuII TTCGAA 1 cut(s) 467
AvaII GGWCC 1 cut(s) 41
BaeI ACNNNNGTAYC 2 cut(s) 840, 873
BalI TGGCCA 3 cut(s) 5, 53, 403
BanII GRGCYC 1 cut(s) 607
BbsI GAAGAC 1 cut(s) 890
Bbv12I GWGCWC 1 cut(s) 607
BccI CCATC 1 cut(s) 427
BciT130I CCWGG 3 cut(s) 87, 354, 711
BcoDI GTCTC 3 cut(s) 164, 566, 830
BfaI CTAG 1 cut(s) 964
BglII AGATCT 1 cut(s) 367
Bme1390I CCNGG 3 cut(s) 87, 354, 711
Bme18I GGWCC 1 cut(s) 41
BmeRI GACNNNNNGTC 1 cut(s) 16
BmgT120I GGNCC 1 cut(s) 41
BmiI GGNNCC 1 cut(s) 861
BmrFI CCNGG 3 cut(s) 87, 354, 711
BmsI GCATC 3 cut(s) 532, 546, 790
BpiI GAAGAC 1 cut(s) 890
Bpu14I TTCGAA 1 cut(s) 467
BsaI GGTCTC 1 cut(s) 830
BsaJI CCNNGG 4 cut(s) 85, 157, 353, 709
Bsc4I CCNNNNNNNGG 5 cut(s) 74, 260, 261, 386, 710
Bse3DI GCAATG 1 cut(s) 592
BseBI CCWGG 3 cut(s) 87, 354, 711
BseDI CCNNGG 4 cut(s) 85, 157, 353, 709
BseGI GGATG 4 cut(s) 363, 395, 602, 649
BseLI CCNNNNNNNGG 5 cut(s) 74, 260, 261, 386, 710
BseMI GCAATG 1 cut(s) 592
BseMII CTCAG 1 cut(s) 159
BsgI GTGCAG 1 cut(s) 439
BshFI GGCC 4 cut(s) 5, 53, 156, 403
BsiHKAI GWGCWC 1 cut(s) 607
BsiWI CGTACG 1 cut(s) 513
BslFI GGGAC 1 cut(s) 692
BslI CCNNNNNNNGG 5 cut(s) 74, 260, 261, 386, 710
BsmAI GTCTC 3 cut(s) 164, 566, 830
BsmBI CGTCTC 1 cut(s) 566
BsmFI GGGAC 1 cut(s) 692
BsnI GGCC 4 cut(s) 5, 53, 156, 403
Bso31I GGTCTC 1 cut(s) 830
Bsp119I TTCGAA 1 cut(s) 467
Bsp1286I GDGCHC 1 cut(s) 607
Bsp143I GATC 5 cut(s) 64, 115, 240, 367, 506
Bsp19I CCATGG 1 cut(s) 157
BspANI GGCC 4 cut(s) 5, 53, 156, 403
BspCNI CTCAG 1 cut(s) 160
BspLI GGNNCC 1 cut(s) 861
BspPI GGATC 2 cut(s) 59, 514
BspT104I TTCGAA 1 cut(s) 467
BspTNI GGTCTC 1 cut(s) 830
BsrDI GCAATG 1 cut(s) 592
BssECI CCNNGG 4 cut(s) 85, 157, 353, 709
BssMI GATC 5 cut(s) 64, 115, 240, 367, 506
BssT1I CCWWGG 1 cut(s) 157
Bst2UI CCWGG 3 cut(s) 87, 354, 711
Bst4CI ACNGT 1 cut(s) 513
Bst6I CTCTTC 2 cut(s) 51, 802
BstBI TTCGAA 1 cut(s) 467
BstC8I GCNNGC 1 cut(s) 136
BstDEI CTNAG 2 cut(s) 168, 897
BstDSI CCRYGG 1 cut(s) 157
BstENI CCTNNNNNAGG 1 cut(s) 384
BstF5I GGATG 4 cut(s) 363, 395, 602, 649
BstKTI GATC 5 cut(s) 67, 118, 243, 370, 509
BstMAI GTCTC 3 cut(s) 164, 566, 830
BstMBI GATC 5 cut(s) 64, 115, 240, 367, 506
BstMWI GCNNNNNNNGC 1 cut(s) 542
BstNI CCWGG 3 cut(s) 87, 354, 711
BstNSI RCATGY 1 cut(s) 742
BstSCI CCNGG 3 cut(s) 85, 352, 709
BstV2I GAAGAC 1 cut(s) 890
BstX2I RGATCY 1 cut(s) 367
BstYI RGATCY 1 cut(s) 367
BsuRI GGCC 4 cut(s) 5, 53, 156, 403
BtgI CCRYGG 1 cut(s) 157
BtsCI GGATG 4 cut(s) 363, 395, 602, 649
BtsI GCAGTG 1 cut(s) 861
BtsIMutI CAGTG 1 cut(s) 861
Cac8I GCNNGC 1 cut(s) 136
CaiI CAGNNNCTG 1 cut(s) 453
Cfr13I GGNCC 1 cut(s) 41
CseI GACGC 1 cut(s) 548
Csp6I GTAC 3 cut(s) 265, 308, 514
CviAII CATG 6 cut(s) 73, 98, 158, 320, 478, 739
CviQI GTAC 3 cut(s) 265, 308, 514
DdeI CTNAG 2 cut(s) 168, 897
DpnI GATC 5 cut(s) 66, 117, 242, 369, 508
DpnII GATC 5 cut(s) 64, 115, 240, 367, 506
DriI GACNNNNNGTC 1 cut(s) 16
EaeI YGGCCR 3 cut(s) 3, 51, 401
Eam1104I CTCTTC 2 cut(s) 51, 802
Eam1105I GACNNNNNGTC 1 cut(s) 16
EarI CTCTTC 2 cut(s) 51, 802
Ecl136II GAGCTC 1 cut(s) 605
Eco130I CCWWGG 1 cut(s) 157
Eco24I GRGCYC 1 cut(s) 607
Eco31I GGTCTC 1 cut(s) 830
Eco32I GATATC 1 cut(s) 693
Eco47I GGWCC 1 cut(s) 41
Eco53kI GAGCTC 1 cut(s) 605
Eco57I CTGAAG 1 cut(s) 647
EcoICRI GAGCTC 1 cut(s) 605
EcoNI CCTNNNNNAGG 1 cut(s) 384
EcoRII CCWGG 3 cut(s) 85, 352, 709
EcoRV GATATC 1 cut(s) 693
EcoT14I CCWWGG 1 cut(s) 157
EcoT22I ATGCAT 1 cut(s) 547
EcoT38I GRGCYC 1 cut(s) 607
ErhI CCWWGG 1 cut(s) 157
Esp3I CGTCTC 1 cut(s) 566
FaeI CATG 6 cut(s) 76, 101, 161, 323, 481, 742
FaqI GGGAC 1 cut(s) 692
FatI CATG 6 cut(s) 72, 97, 157, 319, 477, 738
FauNDI CATATG 1 cut(s) 223
FokI GGATG 4 cut(s) 370, 402, 609, 656
FriOI GRGCYC 1 cut(s) 607
FspBI CTAG 1 cut(s) 964
HaeIII GGCC 4 cut(s) 5, 53, 156, 403
HgaI GACGC 1 cut(s) 548
Hin1II CATG 6 cut(s) 76, 101, 161, 323, 481, 742
HincII GTYRAC 2 cut(s) 774, 961
HindII GTYRAC 2 cut(s) 774, 961
HindIII AAGCTT 1 cut(s) 120
HinfI GANTC 4 cut(s) 172, 193, 250, 770
HphI GGTGA 5 cut(s) 501, 551, 565, 679, 746
Hpy166II GTNNAC 3 cut(s) 308, 774, 961
Hpy188I TCNGA 2 cut(s) 198, 279
Hpy188III TCNNGA 8 cut(s) 80, 167, 190, 244, 254, 424, 575, 641
Hpy8I GTNNAC 3 cut(s) 308, 774, 961
HpyAV CCTTC 2 cut(s) 380, 518
HpyCH4III ACNGT 1 cut(s) 513
HpyCH4V TGCA 7 cut(s) 456, 545, 585, 659, 726, 781, 876
HpyF10VI GCNNNNNNNGC 1 cut(s) 542
HpyF3I CTNAG 2 cut(s) 168, 897
Hsp92II CATG 6 cut(s) 76, 101, 161, 323, 481, 742
Kzo9I GATC 5 cut(s) 64, 115, 240, 367, 506
LmnI GCTCC 2 cut(s) 602, 859
LweI GCATC 3 cut(s) 532, 546, 790
MaeI CTAG 1 cut(s) 964
MaeIII GTNAC 2 cut(s) 392, 734
MalI GATC 5 cut(s) 66, 117, 242, 369, 508
MboI GATC 5 cut(s) 64, 115, 240, 367, 506
MboII GAAGA 3 cut(s) 38, 789, 895
MfeI CAATTG 1 cut(s) 327
MflI RGATCY 1 cut(s) 367
MhlI GDGCHC 1 cut(s) 607
MlsI TGGCCA 3 cut(s) 5, 53, 403
MluCI AATT 9 cut(s) 30, 110, 206, 282, 327, 486, 518, 902, 952
MluNI TGGCCA 3 cut(s) 5, 53, 403
MlyI GAGTC 3 cut(s) 166, 244, 779
MnlI CCTC 6 cut(s) 54, 220, 263, 430, 461, 711
Mox20I TGGCCA 3 cut(s) 5, 53, 403
Mph1103I ATGCAT 1 cut(s) 547
MscI TGGCCA 3 cut(s) 5, 53, 403
MseI TTAA 2 cut(s) 179, 636
Msp20I TGGCCA 3 cut(s) 5, 53, 403
MspR9I CCNGG 3 cut(s) 87, 354, 711
MunI CAATTG 1 cut(s) 327
MvaI CCWGG 3 cut(s) 87, 354, 711
MwoI GCNNNNNNNGC 1 cut(s) 542
NcoI CCATGG 1 cut(s) 157
NdeI CATATG 1 cut(s) 223
NdeII GATC 5 cut(s) 64, 115, 240, 367, 506
NlaIII CATG 6 cut(s) 76, 101, 161, 323, 481, 742
NlaIV GGNNCC 1 cut(s) 861
NmuCI GTSAC 1 cut(s) 734
NsiI ATGCAT 1 cut(s) 547
NspI RCATGY 1 cut(s) 742
NspV TTCGAA 1 cut(s) 467
PfeI GAWTC 1 cut(s) 193
Pfl23II CGTACG 1 cut(s) 513
PleI GAGTC 3 cut(s) 166, 244, 778
PpsI GAGTC 3 cut(s) 166, 244, 778
Psp124BI GAGCTC 1 cut(s) 607
Psp6I CCWGG 3 cut(s) 85, 352, 709
PspGI CCWGG 3 cut(s) 85, 352, 709
PspLI CGTACG 1 cut(s) 513
PspN4I GGNNCC 1 cut(s) 861
PspPI GGNCC 1 cut(s) 41
PstNI CAGNNNCTG 1 cut(s) 453
PsuI RGATCY 1 cut(s) 367
RsaI GTAC 3 cut(s) 266, 309, 515
RsaNI GTAC 3 cut(s) 265, 308, 514
SacI GAGCTC 1 cut(s) 607
SaqAI TTAA 2 cut(s) 179, 636
Sau3AI GATC 5 cut(s) 64, 115, 240, 367, 506
Sau96I GGNCC 1 cut(s) 41
SchI GAGTC 3 cut(s) 166, 244, 779
ScrFI CCNGG 3 cut(s) 87, 354, 711
SduI GDGCHC 1 cut(s) 607
SfaNI GCATC 3 cut(s) 532, 546, 790
SfuI TTCGAA 1 cut(s) 467
SinI GGWCC 1 cut(s) 41
Sse9I AATT 9 cut(s) 30, 110, 206, 282, 327, 486, 518, 902, 952
SspMI CTAG 1 cut(s) 964
SstI GAGCTC 1 cut(s) 607
StyD4I CCNGG 3 cut(s) 85, 352, 709
StyI CCWWGG 1 cut(s) 157
TaaI ACNGT 1 cut(s) 513
TaqI TCGA 2 cut(s) 467, 755
TasI AATT 9 cut(s) 30, 110, 206, 282, 327, 486, 518, 902, 952
TfiI GAWTC 1 cut(s) 193
Tru1I TTAA 2 cut(s) 179, 636
Tru9I TTAA 2 cut(s) 179, 636
TscAI CASTG 1 cut(s) 861
TseFI GTSAC 1 cut(s) 734
Tsp45I GTSAC 1 cut(s) 734
TspDTI ATGAA 1 cut(s) 336
TspGWI ACGGA 1 cut(s) 626
TspRI CASTG 1 cut(s) 861
VpaK11BI GGWCC 1 cut(s) 41
XagI CCTNNNNNAGG 1 cut(s) 384
XapI RAATTY 4 cut(s) 206, 518, 902, 952
XceI RCATGY 1 cut(s) 742
XspI CTAG 1 cut(s) 964
Zsp2I ATGCAT 1 cut(s) 547
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.