AT3G50020

Inhibitor of trypsin and hageman factor-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0014904
Physical Location & Seq
Reverse (-)
18542060 .. 18542690
631 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G50020.1

Sequence Viewer

Length: 291 bp
ATGAATCGTAATTGTCCGCTCTATAGTCCTCCGTGTCAACGCTGCAGCTGTGCTGGCATTACGTGCCAACCTCTATTTCCAGGAATTAAGGTGGATTGGCCAGAATTAAATGGAGTAAAGGGACTTGAAGCTAAGAGAATAATCGAACATGACAATCCAAAAGTGGTGGTTGTTATCATTCCCGATGATGTTGCTGTACTAGCCGTCAATTGTTGTAACCGTGTCATTGTCCGTGTTCCCGTCAACAACTGTCCCAATGGTCCTGTCAGTAATTTTCCTCACATCGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
potato_inhibit

Protein Analysis

96

Amino Acids

10.44

Weight (kDa)

8.16

Isoelectric Point (pI)

33.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
potato_inhibit PF00280 30 - 96 5e-18 Potato inhibitor I family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014904)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G46860 AT3G50020 AT5G45277
fragaria_vesca FvH4_1g16190
malus_domestica MD15G1392900.v1.1
pyrus_communis pycom08g17930
rosa_chinensis RchiOBHm_Chr2g0105871 RchiOBHm_Chr6g0294471
rosa_roxburghii Rroxscaffold_2G00137770 Rroxscaffold_3G00227700 Rroxscaffold_5G00335710
rosa_rugosa Rorug02G0131200 Rorug02G0131400 Rorug07G0278000
rosa_samantha Rh2BG191900
rosa_wichuraiana Rw6G031180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 19
AciI CCGC 1 cut(s) 17
AcoI YGGCCR 1 cut(s) 98
AfaI GTAC 1 cut(s) 198
AfiI CCNNNNNNNGG 1 cut(s) 284
AgsI TTSAA 1 cut(s) 128
AjnI CCWGG 1 cut(s) 79
AjuI GAANNNNNNNTTGG 2 cut(s) 60, 92
AluBI AGCT 2 cut(s) 48, 131
AluI AGCT 2 cut(s) 48, 131
AoxI GGCC 1 cut(s) 98
ApeKI GCWGC 2 cut(s) 42, 45
AspS9I GGNCC 1 cut(s) 260
AvaII GGWCC 1 cut(s) 260
BalI TGGCCA 1 cut(s) 100
BbvI GCAGC 2 cut(s) 29, 57
BceAI ACGGC 1 cut(s) 188
BcgI CGANNNNNNTGC 2 cut(s) 173, 207
BciT130I CCWGG 1 cut(s) 81
BfaI CTAG 1 cut(s) 200
BfmI CTRYAG 2 cut(s) 22, 43
BisI GCNGC 2 cut(s) 43, 46
BlsI GCNGC 2 cut(s) 44, 47
Bme1390I CCNGG 1 cut(s) 81
Bme18I GGWCC 1 cut(s) 260
BmgT120I GGNCC 1 cut(s) 260
BmrFI CCNGG 1 cut(s) 81
BsaAI YACGTR 1 cut(s) 63
Bsc4I CCNNNNNNNGG 1 cut(s) 284
BseBI CCWGG 1 cut(s) 81
BseLI CCNNNNNNNGG 1 cut(s) 284
BseXI GCAGC 2 cut(s) 29, 57
BshFI GGCC 1 cut(s) 100
BslFI GGGAC 2 cut(s) 135, 237
BslI CCNNNNNNNGG 1 cut(s) 284
BsmFI GGGAC 2 cut(s) 135, 237
BsnI GGCC 1 cut(s) 100
BspACI CCGC 1 cut(s) 17
BspANI GGCC 1 cut(s) 100
BspMAI CTGCAG 1 cut(s) 47
BsrBI CCGCTC 1 cut(s) 19
Bst2UI CCWGG 1 cut(s) 81
Bst4CI ACNGT 2 cut(s) 221, 251
BstAPI GCANNNNNTGC 1 cut(s) 63
BstBAI YACGTR 1 cut(s) 63
BstC8I GCNNGC 1 cut(s) 55
BstDEI CTNAG 1 cut(s) 132
BstMWI GCNNNNNNNGC 3 cut(s) 54, 63, 200
BstNI CCWGG 1 cut(s) 81
BstSCI CCNGG 1 cut(s) 79
BstSFI CTRYAG 2 cut(s) 22, 43
BstV1I GCAGC 2 cut(s) 29, 57
BsuRI GGCC 1 cut(s) 100
Cac8I GCNNGC 1 cut(s) 55
Cfr13I GGNCC 1 cut(s) 260
Csp6I GTAC 1 cut(s) 197
CspCI CAANNNNNGTGG 2 cut(s) 147, 182
CviAII CATG 1 cut(s) 149
CviJI RGCY 4 cut(s) 48, 100, 131, 203
CviKI_1 RGCY 4 cut(s) 48, 100, 131, 203
CviQI GTAC 1 cut(s) 197
DdeI CTNAG 1 cut(s) 132
EaeI YGGCCR 1 cut(s) 98
Eco47I GGWCC 1 cut(s) 260
EcoRII CCWGG 1 cut(s) 79
FaeI CATG 1 cut(s) 152
FaiI YATR 2 cut(s) 24, 150
FaqI GGGAC 2 cut(s) 135, 237
FatI CATG 1 cut(s) 148
Fnu4HI GCNGC 2 cut(s) 43, 46
Fsp4HI GCNGC 2 cut(s) 43, 46
FspBI CTAG 1 cut(s) 200
GluI GCNGC 2 cut(s) 43, 46
HaeIII GGCC 1 cut(s) 100
Hin1II CATG 1 cut(s) 152
HincII GTYRAC 2 cut(s) 38, 244
HindII GTYRAC 2 cut(s) 38, 244
HinfI GANTC 1 cut(s) 4
Hpy166II GTNNAC 2 cut(s) 38, 244
Hpy188I TCNGA 1 cut(s) 287
Hpy188III TCNNGA 1 cut(s) 182
Hpy8I GTNNAC 2 cut(s) 38, 244
HpyCH4III ACNGT 2 cut(s) 221, 251
HpyCH4IV ACGT 1 cut(s) 62
HpyCH4V TGCA 1 cut(s) 45
HpyF10VI GCNNNNNNNGC 3 cut(s) 54, 63, 200
HpyF3I CTNAG 1 cut(s) 132
HpySE526I ACGT 1 cut(s) 62
Hsp92II CATG 1 cut(s) 152
LpnPI CCDG 5 cut(s) 39, 66, 93, 114, 276
Lsp1109I GCAGC 2 cut(s) 29, 57
MaeI CTAG 1 cut(s) 200
MaeII ACGT 1 cut(s) 62
MaeIII GTNAC 1 cut(s) 215
MbiI CCGCTC 1 cut(s) 19
MfeI CAATTG 1 cut(s) 208
MlsI TGGCCA 1 cut(s) 100
MluCI AATT 5 cut(s) 10, 84, 104, 208, 271
MluNI TGGCCA 1 cut(s) 100
MnlI CCTC 3 cut(s) 39, 81, 288
Mox20I TGGCCA 1 cut(s) 100
MscI TGGCCA 1 cut(s) 100
MseI TTAA 2 cut(s) 87, 107
Msp20I TGGCCA 1 cut(s) 100
MspA1I CMGCKG 1 cut(s) 48
MspR9I CCNGG 1 cut(s) 81
MunI CAATTG 1 cut(s) 208
MvaI CCWGG 1 cut(s) 81
MwoI GCNNNNNNNGC 3 cut(s) 54, 63, 200
NlaIII CATG 1 cut(s) 152
PfeI GAWTC 1 cut(s) 4
PfoI TCCNGGA 1 cut(s) 79
PkrI GCNGC 2 cut(s) 44, 47
Ppu21I YACGTR 1 cut(s) 63
Psp6I CCWGG 1 cut(s) 79
PspGI CCWGG 1 cut(s) 79
PspPI GGNCC 1 cut(s) 260
PstI CTGCAG 1 cut(s) 47
PvuII CAGCTG 1 cut(s) 48
RsaI GTAC 1 cut(s) 198
RsaNI GTAC 1 cut(s) 197
SaqAI TTAA 2 cut(s) 87, 107
SatI GCNGC 2 cut(s) 43, 46
Sau96I GGNCC 1 cut(s) 260
ScrFI CCNGG 1 cut(s) 81
SetI ASST 5 cut(s) 50, 65, 73, 93, 133
SfcI CTRYAG 2 cut(s) 22, 43
SinI GGWCC 1 cut(s) 260
Sse9I AATT 5 cut(s) 10, 84, 104, 208, 271
SsiI CCGC 1 cut(s) 17
SspMI CTAG 1 cut(s) 200
StyD4I CCNGG 1 cut(s) 79
TaaI ACNGT 2 cut(s) 221, 251
TaiI ACGT 1 cut(s) 65
TaqI TCGA 1 cut(s) 144
TasI AATT 5 cut(s) 10, 84, 104, 208, 271
TatI WGTACW 1 cut(s) 196
TfiI GAWTC 1 cut(s) 4
Tru1I TTAA 2 cut(s) 87, 107
Tru9I TTAA 2 cut(s) 87, 107
TseI GCWGC 2 cut(s) 42, 45
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 2 cut(s) 21, 221
VpaK11BI GGWCC 1 cut(s) 260
XspI CTAG 1 cut(s) 200
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.