Rw6G031180

Potato inhibitor I family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0014904
Physical Location & Seq
Reverse (-)
55190638 .. 55191797
1160 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G031180.1

Sequence Viewer

Length: 252 bp
ATGTCTGATCCTTACCCTCCTTGTGATGGCGGAGAACTTGGATGCCCCAGTCTAAGATACAAATATTCATGGCCCGAGTTAGTTGGAAAACCTGGGAAATTAGCTAAACAAATAATAGAGAAGGACAACCACTTTGTTACAGTCTTGATCCTAAAACCAGGCGATTCAATAACTGGAGACCGTTGTTGCAACCGTGTGTATTTTTGGGTGGATGACCATGGCAATGTTACAAGCTACTATCCACCCAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
potato_inhibit

Protein Analysis

83

Amino Acids

9.41

Weight (kDa)

6.69

Isoelectric Point (pI)

28.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
potato_inhibit PF00280 21 - 78 2.9e-19 Potato inhibitor I family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014904)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G46860 AT3G50020 AT5G45277
fragaria_vesca FvH4_1g16190
malus_domestica MD15G1392900.v1.1
pyrus_communis pycom08g17930
rosa_chinensis RchiOBHm_Chr2g0105871 RchiOBHm_Chr6g0294471
rosa_roxburghii Rroxscaffold_2G00137770 Rroxscaffold_3G00227700 Rroxscaffold_5G00335710
rosa_rugosa Rorug02G0131200 Rorug02G0131400 Rorug07G0278000
rosa_samantha Rh2BG191900
rosa_wichuraiana Rw6G031180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 30
AclWI GGATC 2 cut(s) 2, 142
AfiI CCNNNNNNNGG 1 cut(s) 26
AgsI TTSAA 1 cut(s) 168
AjnI CCWGG 2 cut(s) 91, 157
AluBI AGCT 2 cut(s) 104, 234
AluI AGCT 2 cut(s) 104, 234
Alw26I GTCTC 1 cut(s) 171
AlwI GGATC 2 cut(s) 2, 142
Ama87I CYCGRG 1 cut(s) 74
AoxI GGCC 1 cut(s) 71
ArsI GACNNNNNNTTYG 2 cut(s) 116, 148
AspS9I GGNCC 1 cut(s) 72
AvaI CYCGRG 1 cut(s) 74
BccI CCATC 1 cut(s) 20
BciT130I CCWGG 2 cut(s) 93, 159
BcoDI GTCTC 1 cut(s) 171
Bme1390I CCNGG 2 cut(s) 93, 159
BmeT110I CYCGRG 1 cut(s) 74
BmgT120I GGNCC 1 cut(s) 72
BmrFI CCNGG 2 cut(s) 93, 159
BmrI ACTGGG 1 cut(s) 42
BmsI GCATC 1 cut(s) 32
BmuI ACTGGG 1 cut(s) 42
BpmI CTGGAG 1 cut(s) 195
BsaI GGTCTC 1 cut(s) 171
BsaJI CCNNGG 2 cut(s) 92, 217
Bsc4I CCNNNNNNNGG 1 cut(s) 26
Bse1I ACTGG 2 cut(s) 48, 178
Bse3DI GCAATG 1 cut(s) 229
BseBI CCWGG 2 cut(s) 93, 159
BseDI CCNNGG 2 cut(s) 92, 217
BseGI GGATG 2 cut(s) 47, 217
BseLI CCNNNNNNNGG 1 cut(s) 26
BseMI GCAATG 1 cut(s) 229
BseNI ACTGG 2 cut(s) 48, 178
BshFI GGCC 1 cut(s) 73
BsiHKCI CYCGRG 1 cut(s) 74
BslI CCNNNNNNNGG 1 cut(s) 26
BsmAI GTCTC 1 cut(s) 171
BsnI GGCC 1 cut(s) 73
Bso31I GGTCTC 1 cut(s) 171
BsoBI CYCGRG 1 cut(s) 74
Bsp143I GATC 2 cut(s) 7, 147
Bsp19I CCATGG 1 cut(s) 217
BspACI CCGC 1 cut(s) 30
BspANI GGCC 1 cut(s) 73
BspPI GGATC 2 cut(s) 2, 142
BspTNI GGTCTC 1 cut(s) 171
BsrDI GCAATG 1 cut(s) 229
BsrI ACTGG 2 cut(s) 48, 178
BssECI CCNNGG 2 cut(s) 92, 217
BssMI GATC 2 cut(s) 7, 147
BssT1I CCWWGG 1 cut(s) 217
Bst2UI CCWGG 2 cut(s) 93, 159
Bst4CI ACNGT 3 cut(s) 142, 182, 194
BstDEI CTNAG 1 cut(s) 53
BstDSI CCRYGG 1 cut(s) 217
BstF5I GGATG 2 cut(s) 47, 217
BstKTI GATC 2 cut(s) 10, 150
BstMAI GTCTC 1 cut(s) 171
BstMBI GATC 2 cut(s) 7, 147
BstNI CCWGG 2 cut(s) 93, 159
BstSCI CCNGG 2 cut(s) 91, 157
BsuRI GGCC 1 cut(s) 73
BtgI CCRYGG 1 cut(s) 217
BtsCI GGATG 2 cut(s) 47, 217
Cfr13I GGNCC 1 cut(s) 72
CviAII CATG 2 cut(s) 69, 218
CviJI RGCY 3 cut(s) 73, 104, 234
CviKI_1 RGCY 3 cut(s) 73, 104, 234
DdeI CTNAG 1 cut(s) 53
DpnI GATC 2 cut(s) 9, 149
DpnII GATC 2 cut(s) 7, 147
EciI GGCGGA 1 cut(s) 45
Eco130I CCWWGG 1 cut(s) 217
Eco31I GGTCTC 1 cut(s) 171
Eco88I CYCGRG 1 cut(s) 74
EcoRII CCWGG 2 cut(s) 91, 157
EcoT14I CCWWGG 1 cut(s) 217
ErhI CCWWGG 1 cut(s) 217
FaeI CATG 2 cut(s) 72, 221
FaiI YATR 2 cut(s) 70, 219
FatI CATG 2 cut(s) 68, 217
FokI GGATG 2 cut(s) 54, 224
GsuI CTGGAG 1 cut(s) 195
HaeIII GGCC 1 cut(s) 73
Hin1II CATG 2 cut(s) 72, 221
HinfI GANTC 1 cut(s) 164
Hpy188I TCNGA 1 cut(s) 7
Hpy188III TCNNGA 1 cut(s) 145
HpyAV CCTTC 1 cut(s) 115
HpyCH4III ACNGT 3 cut(s) 142, 182, 194
HpyCH4V TGCA 1 cut(s) 189
HpyF3I CTNAG 1 cut(s) 53
Hsp92II CATG 2 cut(s) 72, 221
Kzo9I GATC 2 cut(s) 7, 147
LpnPI CCDG 6 cut(s) 61, 78, 105, 144, 159, 171
LweI GCATC 1 cut(s) 32
MaeIII GTNAC 2 cut(s) 136, 226
MalI GATC 2 cut(s) 9, 149
MboI GATC 2 cut(s) 7, 147
MluCI AATT 1 cut(s) 98
MmeI TCCRAC 1 cut(s) 64
MnlI CCTC 1 cut(s) 27
MslI CAYNNNNRTG 1 cut(s) 222
MspR9I CCNGG 2 cut(s) 93, 159
MvaI CCWGG 2 cut(s) 93, 159
NcoI CCATGG 1 cut(s) 217
NdeII GATC 2 cut(s) 7, 147
NlaIII CATG 2 cut(s) 72, 221
PfeI GAWTC 1 cut(s) 164
Psp6I CCWGG 2 cut(s) 91, 157
PspGI CCWGG 2 cut(s) 91, 157
PspPI GGNCC 1 cut(s) 72
RseI CAYNNNNRTG 1 cut(s) 222
Sau3AI GATC 2 cut(s) 7, 147
Sau96I GGNCC 1 cut(s) 72
ScrFI CCNGG 2 cut(s) 93, 159
SetI ASST 3 cut(s) 94, 106, 236
SfaNI GCATC 1 cut(s) 32
SmiMI CAYNNNNRTG 1 cut(s) 222
Sse9I AATT 1 cut(s) 98
SsiI CCGC 1 cut(s) 30
SspI AATATT 1 cut(s) 65
StyD4I CCNGG 2 cut(s) 91, 157
StyI CCWWGG 1 cut(s) 217
TaaI ACNGT 3 cut(s) 142, 182, 194
TasI AATT 1 cut(s) 98
TfiI GAWTC 1 cut(s) 164
TspDTI ATGAA 1 cut(s) 57
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.