MD15G1392900.v1.1

Potato inhibitor I family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0014904
Physical Location & Seq
Forward (+)
49008532 .. 49008912
381 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1392900.v1.1.491

Sequence Viewer

Length: 273 bp
ATGGTTGGAGCTTCTTGGCCTCATTACCCACCTTGCGTCAGCGAAGACTGTACAAATGCTGCATGTTGTGGTCAAGAATTCAAATATGTTTGGCCGGAACTAGTTGGAAAGCCTGCGTCGGAGGCTGCAGCCATAATCGAGAAGAGCAACCCATCAGTTACAGTTCTCATCTTAAAGCCTGGATTGATTAGATTGGACAATTTTTGTTGCAACCGTGTGTATGTTTTCAGTGATCAAAAGGGCAGAGTCTCGGCGGTACCTACAGTCGGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
potato_inhibit

Protein Analysis

91

Amino Acids

9.73

Weight (kDa)

6.53

Isoelectric Point (pI)

33.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
potato_inhibit PF00280 28 - 90 1.2e-21 Potato inhibitor I family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014904)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G46860 AT3G50020 AT5G45277
fragaria_vesca FvH4_1g16190
malus_domestica MD15G1392900.v1.1
pyrus_communis pycom08g17930
rosa_chinensis RchiOBHm_Chr2g0105871 RchiOBHm_Chr6g0294471
rosa_roxburghii Rroxscaffold_2G00137770 Rroxscaffold_3G00227700 Rroxscaffold_5G00335710
rosa_rugosa Rorug02G0131200 Rorug02G0131400 Rorug07G0278000
rosa_samantha Rh2BG191900
rosa_wichuraiana Rw6G031180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 256
AccB1I GGYRCC 1 cut(s) 256
AciI CCGC 1 cut(s) 254
AcoI YGGCCR 1 cut(s) 92
AcsI RAATTY 1 cut(s) 77
AfaI GTAC 2 cut(s) 52, 258
AfiI CCNNNNNNNGG 1 cut(s) 266
AgsI TTSAA 1 cut(s) 82
AhlI ACTAGT 1 cut(s) 100
AjnI CCWGG 1 cut(s) 178
AluBI AGCT 1 cut(s) 11
AluI AGCT 1 cut(s) 11
Alw26I GTCTC 1 cut(s) 253
AoxI GGCC 2 cut(s) 17, 92
ApeKI GCWGC 3 cut(s) 59, 125, 128
ApoI RAATTY 1 cut(s) 77
Asp718I GGTACC 1 cut(s) 256
BanI GGYRCC 1 cut(s) 256
BbsI GAAGAC 1 cut(s) 51
BbvI GCAGC 3 cut(s) 46, 112, 140
BccI CCATC 1 cut(s) 160
BciT130I CCWGG 1 cut(s) 180
BclI TGATCA 1 cut(s) 232
BcoDI GTCTC 1 cut(s) 253
BcuI ACTAGT 1 cut(s) 100
BfaI CTAG 1 cut(s) 101
BfmI CTRYAG 2 cut(s) 126, 261
BisI GCNGC 3 cut(s) 60, 126, 129
BlsI GCNGC 3 cut(s) 61, 127, 130
Bme1390I CCNGG 1 cut(s) 180
BmiI GGNNCC 1 cut(s) 258
BmrFI CCNGG 1 cut(s) 180
BpiI GAAGAC 1 cut(s) 51
Bsc4I CCNNNNNNNGG 1 cut(s) 266
BseBI CCWGG 1 cut(s) 180
BseLI CCNNNNNNNGG 1 cut(s) 266
BseXI GCAGC 3 cut(s) 46, 112, 140
BshFI GGCC 2 cut(s) 19, 94
BshNI GGYRCC 1 cut(s) 256
BsiSI CCGG 1 cut(s) 95
BslI CCNNNNNNNGG 1 cut(s) 266
BsmAI GTCTC 1 cut(s) 253
BsnI GGCC 2 cut(s) 19, 94
Bsp1407I TGTACA 1 cut(s) 50
Bsp143I GATC 1 cut(s) 232
BspACI CCGC 1 cut(s) 254
BspANI GGCC 2 cut(s) 19, 94
BspLI GGNNCC 1 cut(s) 258
BspMAI CTGCAG 1 cut(s) 130
BspQI GCTCTTC 1 cut(s) 137
BspT107I GGYRCC 1 cut(s) 256
BsrGI TGTACA 1 cut(s) 50
BssMI GATC 1 cut(s) 232
Bst2UI CCWGG 1 cut(s) 180
Bst4CI ACNGT 4 cut(s) 50, 163, 215, 265
Bst6I CTCTTC 1 cut(s) 137
BstAUI TGTACA 1 cut(s) 50
BstC8I GCNNGC 1 cut(s) 114
BstKTI GATC 1 cut(s) 235
BstMAI GTCTC 1 cut(s) 253
BstMBI GATC 1 cut(s) 232
BstMWI GCNNNNNNNGC 1 cut(s) 122
BstNI CCWGG 1 cut(s) 180
BstNSI RCATGY 1 cut(s) 66
BstSCI CCNGG 1 cut(s) 178
BstSFI CTRYAG 2 cut(s) 126, 261
BstV1I GCAGC 3 cut(s) 46, 112, 140
BstV2I GAAGAC 1 cut(s) 51
BsuRI GGCC 2 cut(s) 19, 94
BtsIMutI CAGTG 1 cut(s) 235
Cac8I GCNNGC 1 cut(s) 114
CseI GACGC 2 cut(s) 25, 105
Csp6I GTAC 2 cut(s) 51, 257
CviAII CATG 1 cut(s) 63
CviJI RGCY 7 cut(s) 11, 19, 94, 112, 125, 131, 178
CviKI_1 RGCY 7 cut(s) 11, 19, 94, 112, 125, 131, 178
CviQI GTAC 2 cut(s) 51, 257
DpnI GATC 1 cut(s) 234
DpnII GATC 1 cut(s) 232
EaeI YGGCCR 1 cut(s) 92
Eam1104I CTCTTC 1 cut(s) 137
EarI CTCTTC 1 cut(s) 137
EcoRI GAATTC 1 cut(s) 77
EcoRII CCWGG 1 cut(s) 178
FaeI CATG 1 cut(s) 66
FaiI YATR 4 cut(s) 64, 87, 134, 222
FatI CATG 1 cut(s) 62
FbaI TGATCA 1 cut(s) 232
Fnu4HI GCNGC 3 cut(s) 60, 126, 129
Fsp4HI GCNGC 3 cut(s) 60, 126, 129
FspBI CTAG 1 cut(s) 101
GluI GCNGC 3 cut(s) 60, 126, 129
HaeIII GGCC 2 cut(s) 19, 94
HapII CCGG 1 cut(s) 95
HgaI GACGC 2 cut(s) 25, 105
Hin1II CATG 1 cut(s) 66
HinfI GANTC 1 cut(s) 246
HpaII CCGG 1 cut(s) 95
Hpy188I TCNGA 1 cut(s) 121
Hpy188III TCNNGA 2 cut(s) 74, 139
Hpy99I CGWCG 1 cut(s) 121
HpyCH4III ACNGT 4 cut(s) 50, 163, 215, 265
HpyCH4V TGCA 3 cut(s) 62, 128, 210
HpyF10VI GCNNNNNNNGC 1 cut(s) 122
Hsp92II CATG 1 cut(s) 66
KpnI GGTACC 1 cut(s) 260
Ksp22I TGATCA 1 cut(s) 232
Kzo9I GATC 1 cut(s) 232
LguI GCTCTTC 1 cut(s) 137
LmnI GCTCC 1 cut(s) 8
LpnPI CCDG 4 cut(s) 108, 126, 165, 192
Lsp1109I GCAGC 3 cut(s) 46, 112, 140
MaeI CTAG 1 cut(s) 101
MaeIII GTNAC 1 cut(s) 157
MalI GATC 1 cut(s) 234
MboI GATC 1 cut(s) 232
MboII GAAGA 2 cut(s) 56, 154
MluCI AATT 2 cut(s) 77, 199
MlyI GAGTC 1 cut(s) 255
MmeI TCCRAC 2 cut(s) 85, 99
MnlI CCTC 2 cut(s) 30, 115
MseI TTAA 1 cut(s) 173
MspI CCGG 1 cut(s) 95
MspR9I CCNGG 1 cut(s) 180
MvaI CCWGG 1 cut(s) 180
MwoI GCNNNNNNNGC 1 cut(s) 122
NdeII GATC 1 cut(s) 232
NlaIII CATG 1 cut(s) 66
NlaIV GGNNCC 1 cut(s) 258
NmeAIII GCCGAG 1 cut(s) 230
NspI RCATGY 1 cut(s) 66
PciSI GCTCTTC 1 cut(s) 137
PkrI GCNGC 3 cut(s) 61, 127, 130
PleI GAGTC 1 cut(s) 254
PpsI GAGTC 1 cut(s) 254
Psp6I CCWGG 1 cut(s) 178
PspGI CCWGG 1 cut(s) 178
PspN4I GGNNCC 1 cut(s) 258
PstI CTGCAG 1 cut(s) 130
RsaI GTAC 2 cut(s) 52, 258
RsaNI GTAC 2 cut(s) 51, 257
SapI GCTCTTC 1 cut(s) 137
SaqAI TTAA 1 cut(s) 173
SatI GCNGC 3 cut(s) 60, 126, 129
Sau3AI GATC 1 cut(s) 232
SchI GAGTC 1 cut(s) 255
ScrFI CCNGG 1 cut(s) 180
SetI ASST 3 cut(s) 13, 34, 262
SfcI CTRYAG 2 cut(s) 126, 261
SpeI ACTAGT 1 cut(s) 100
Sse9I AATT 2 cut(s) 77, 199
SsiI CCGC 1 cut(s) 254
SspMI CTAG 1 cut(s) 101
StyD4I CCNGG 1 cut(s) 178
TaaI ACNGT 4 cut(s) 50, 163, 215, 265
TaqI TCGA 1 cut(s) 138
TasI AATT 2 cut(s) 77, 199
TatI WGTACW 1 cut(s) 50
Tru1I TTAA 1 cut(s) 173
Tru9I TTAA 1 cut(s) 173
TscAI CASTG 1 cut(s) 235
TseI GCWGC 3 cut(s) 59, 125, 128
TspRI CASTG 1 cut(s) 235
XapI RAATTY 1 cut(s) 77
XceI RCATGY 1 cut(s) 66
XspI CTAG 1 cut(s) 101
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.