Rroxscaffold_2G00137770

Potato inhibitor I family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0014904
Physical Location & Seq
Reverse (-)
75795441 .. 75795792
352 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00137770.1

Sequence Viewer

Length: 261 bp
ATGTCTGATCCTTACCCTCCTTGTAACAACGGAGCAGTGCCATGCCACAGTCAAGCAAAATACAAACAAATATGGCTTGAACTAGTTGGAAAGCCTGTGCAGCTTGCCAAAACAATAATCGAGAAGGACAATCCATTTGTTACTGCAGAGATCATAAAACCAGGCATGGGGATAATTTTTAACTATTGCTGCAACCGTGTATGGATTTGGGAAGATAACCTTGGCAATGTTGCAGAACACCATATACCAAAAATAGGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
potato_inhibit

Protein Analysis

86

Amino Acids

9.7

Weight (kDa)

6.8

Isoelectric Point (pI)

35.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
potato_inhibit PF00280 22 - 86 3.2e-17 Potato inhibitor I family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014904)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G46860 AT3G50020 AT5G45277
fragaria_vesca FvH4_1g16190
malus_domestica MD15G1392900.v1.1
pyrus_communis pycom08g17930
rosa_chinensis RchiOBHm_Chr2g0105871 RchiOBHm_Chr6g0294471
rosa_roxburghii Rroxscaffold_2G00137770 Rroxscaffold_3G00227700 Rroxscaffold_5G00335710
rosa_rugosa Rorug02G0131200 Rorug02G0131400 Rorug07G0278000
rosa_samantha Rh2BG191900
rosa_wichuraiana Rw6G031180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 2
AfiI CCNNNNNNNGG 2 cut(s) 167, 254
AgsI TTSAA 1 cut(s) 80
AhlI ACTAGT 1 cut(s) 82
AjnI CCWGG 1 cut(s) 160
AjuI GAANNNNNNNTTGG 2 cut(s) 204, 236
AluBI AGCT 1 cut(s) 103
AluI AGCT 1 cut(s) 103
AlwI GGATC 1 cut(s) 2
ApeKI GCWGC 2 cut(s) 100, 189
ArsI GACNNNNNNTTYG 2 cut(s) 119, 151
BbvI GCAGC 2 cut(s) 112, 176
BciT130I CCWGG 1 cut(s) 162
BcuI ACTAGT 1 cut(s) 82
BfaI CTAG 1 cut(s) 83
BfmI CTRYAG 1 cut(s) 144
BisI GCNGC 2 cut(s) 101, 190
BlsI GCNGC 2 cut(s) 102, 191
Bme1390I CCNGG 1 cut(s) 162
BmrFI CCNGG 1 cut(s) 162
BsaJI CCNNGG 1 cut(s) 220
Bsc4I CCNNNNNNNGG 2 cut(s) 167, 254
Bse3DI GCAATG 1 cut(s) 232
BseBI CCWGG 1 cut(s) 162
BseDI CCNNGG 1 cut(s) 220
BseLI CCNNNNNNNGG 2 cut(s) 167, 254
BseMI GCAATG 1 cut(s) 232
BseXI GCAGC 2 cut(s) 112, 176
BsgI GTGCAG 1 cut(s) 119
BslI CCNNNNNNNGG 2 cut(s) 167, 254
Bsp143I GATC 2 cut(s) 7, 150
BspMAI CTGCAG 1 cut(s) 148
BspPI GGATC 1 cut(s) 2
BsrDI GCAATG 1 cut(s) 232
BssECI CCNNGG 1 cut(s) 220
BssMI GATC 2 cut(s) 7, 150
BssT1I CCWWGG 1 cut(s) 220
Bst2UI CCWGG 1 cut(s) 162
Bst4CI ACNGT 2 cut(s) 50, 197
BstC8I GCNNGC 1 cut(s) 105
BstKTI GATC 2 cut(s) 10, 153
BstMBI GATC 2 cut(s) 7, 150
BstMWI GCNNNNNNNGC 1 cut(s) 100
BstNI CCWGG 1 cut(s) 162
BstSCI CCNGG 1 cut(s) 160
BstSFI CTRYAG 1 cut(s) 144
BstV1I GCAGC 2 cut(s) 112, 176
BtsI GCAGTG 1 cut(s) 42
BtsIMutI CAGTG 1 cut(s) 42
Cac8I GCNNGC 1 cut(s) 105
CviAII CATG 2 cut(s) 42, 166
CviJI RGCY 4 cut(s) 76, 94, 103, 258
CviKI_1 RGCY 4 cut(s) 76, 94, 103, 258
DpnI GATC 2 cut(s) 9, 152
DpnII GATC 2 cut(s) 7, 150
Eco130I CCWWGG 1 cut(s) 220
EcoRII CCWGG 1 cut(s) 160
EcoT14I CCWWGG 1 cut(s) 220
ErhI CCWWGG 1 cut(s) 220
FaeI CATG 2 cut(s) 45, 169
FaiI YATR 7 cut(s) 43, 73, 155, 167, 202, 243, 245
FalI AAGNNNNNCTT 2 cut(s) 204, 236
FatI CATG 2 cut(s) 41, 165
Fnu4HI GCNGC 2 cut(s) 101, 190
Fsp4HI GCNGC 2 cut(s) 101, 190
FspBI CTAG 1 cut(s) 83
GluI GCNGC 2 cut(s) 101, 190
Hin1II CATG 2 cut(s) 45, 169
Hpy188I TCNGA 1 cut(s) 7
Hpy188III TCNNGA 1 cut(s) 121
HpyAV CCTTC 1 cut(s) 118
HpyCH4III ACNGT 2 cut(s) 50, 197
HpyCH4V TGCA 4 cut(s) 100, 146, 192, 233
HpyF10VI GCNNNNNNNGC 1 cut(s) 100
Hsp92II CATG 2 cut(s) 45, 169
Kzo9I GATC 2 cut(s) 7, 150
LmnI GCTCC 1 cut(s) 32
LpnPI CCDG 3 cut(s) 108, 147, 174
Lsp1109I GCAGC 2 cut(s) 112, 176
MaeI CTAG 1 cut(s) 83
MaeIII GTNAC 2 cut(s) 23, 139
MalI GATC 2 cut(s) 9, 152
MboI GATC 2 cut(s) 7, 150
MboII GAAGA 1 cut(s) 224
MluCI AATT 1 cut(s) 174
MmeI TCCRAC 1 cut(s) 67
MnlI CCTC 1 cut(s) 27
MseI TTAA 1 cut(s) 180
MspR9I CCNGG 1 cut(s) 162
MvaI CCWGG 1 cut(s) 162
MwoI GCNNNNNNNGC 1 cut(s) 100
NdeII GATC 2 cut(s) 7, 150
NlaIII CATG 2 cut(s) 45, 169
PkrI GCNGC 2 cut(s) 102, 191
Psp6I CCWGG 1 cut(s) 160
PspGI CCWGG 1 cut(s) 160
PsrI GAACNNNNNNTAC 2 cut(s) 228, 260
PstI CTGCAG 1 cut(s) 148
SaqAI TTAA 1 cut(s) 180
SatI GCNGC 2 cut(s) 101, 190
Sau3AI GATC 2 cut(s) 7, 150
ScrFI CCNGG 1 cut(s) 162
SetI ASST 2 cut(s) 105, 222
SfcI CTRYAG 1 cut(s) 144
SpeI ACTAGT 1 cut(s) 82
Sse9I AATT 1 cut(s) 174
SspMI CTAG 1 cut(s) 83
StyD4I CCNGG 1 cut(s) 160
StyI CCWWGG 1 cut(s) 220
TaaI ACNGT 2 cut(s) 50, 197
TaqI TCGA 1 cut(s) 120
TasI AATT 1 cut(s) 174
Tru1I TTAA 1 cut(s) 180
Tru9I TTAA 1 cut(s) 180
TscAI CASTG 1 cut(s) 42
TseI GCWGC 2 cut(s) 100, 189
TspGWI ACGGA 1 cut(s) 45
TspRI CASTG 1 cut(s) 42
XspI CTAG 1 cut(s) 83
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.