Rorug02G0131200

Potato inhibitor I family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0014904
Physical Location & Seq
Reverse (-)
11334024 .. 11337296
3273 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0131200.1

Sequence Viewer

Length: 486 bp
ATGACCAGCTCCTCCGCCTCCTCCCGCAAGATTTTGAGTAAGATTGCTTGCAATCGGCTCCAGAAGGAGCTCCTGGAGTGGCAGGTCAATCCTCCGGCGGGCTTTAAACACAAAGTCACTGACAATCTCCAAAGGTGGGTGATTGAAGTGAATGGAGCGCCTGGGACTCTGTATTCGAATGAGACCTATCAGCTTCAGGTTGATTTCCCTGAGCATTACCCGATGGAAGCACCACAGGTTATCTTTGTGCCTCCGGCTCCAATGCATCCTCATATTTATAGCAACGGTCATATATGTTTAGATATTTTGTATGATTCTTGGTCGCCAGCCATGACTGTTAGTTCCATCTGTATTAGCATTCTCTCCATGCTATCAAGCTCCACTGTGAAGCAACGCCCTGAAGATAATGACCGGTATGTAAAGAACTGTAGAAATGGAAGATCTCCCAAGGAGACGAGATGGTGGTTCCATGATGATAAAGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
potato_inhibit

Protein Analysis

161

Amino Acids

18.48

Weight (kDa)

7.72

Isoelectric Point (pI)

70.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UQ_con PF00179 19 - 154 3.6e-38 Ubiquitin-conjugating enzyme
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014904)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G46860 AT3G50020 AT5G45277
fragaria_vesca FvH4_1g16190
malus_domestica MD15G1392900.v1.1
pyrus_communis pycom08g17930
rosa_chinensis RchiOBHm_Chr2g0105871 RchiOBHm_Chr6g0294471
rosa_roxburghii Rroxscaffold_2G00137770 Rroxscaffold_3G00227700 Rroxscaffold_5G00335710
rosa_rugosa Rorug02G0131200 Rorug02G0131400 Rorug07G0278000
rosa_samantha Rh2BG191900
rosa_wichuraiana Rw6G031180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 73
AciI CCGC 3 cut(s) 15, 25, 98
AcuI CTGAAG 2 cut(s) 179, 420
AfiI CCNNNNNNNGG 2 cut(s) 98, 136
AgeI ACCGGT 1 cut(s) 411
AgsI TTSAA 1 cut(s) 146
AjnI CCWGG 2 cut(s) 72, 160
AluBI AGCT 4 cut(s) 9, 70, 193, 378
AluI AGCT 4 cut(s) 9, 70, 193, 378
Alw21I GWGCWC 1 cut(s) 72
Alw26I GTCTC 2 cut(s) 176, 446
ArsI GACNNNNNNTTYG 2 cut(s) 157, 189
AsiGI ACCGGT 1 cut(s) 411
AspLEI GCGC 1 cut(s) 160
AsuHPI GGTGA 1 cut(s) 151
AsuII TTCGAA 1 cut(s) 176
BanII GRGCYC 1 cut(s) 72
Bbv12I GWGCWC 1 cut(s) 72
BccI CCATC 3 cut(s) 217, 353, 453
BciT130I CCWGG 2 cut(s) 74, 162
BcoDI GTCTC 2 cut(s) 176, 446
BfmI CTRYAG 1 cut(s) 427
BfoI RGCGCY 1 cut(s) 161
BfuAI ACCTGC 1 cut(s) 73
BglII AGATCT 1 cut(s) 440
Bme1390I CCNGG 2 cut(s) 74, 162
BmiI GGNNCC 3 cut(s) 59, 258, 467
BmrFI CCNGG 2 cut(s) 74, 162
BmsI GCATC 1 cut(s) 274
BpmI CTGGAG 2 cut(s) 44, 95
Bpu10I CCTNAGC 1 cut(s) 210
Bpu14I TTCGAA 1 cut(s) 176
BsaI GGTCTC 1 cut(s) 176
BsaJI CCNNGG 2 cut(s) 161, 447
BsaWI WCCGGW 1 cut(s) 411
Bsc4I CCNNNNNNNGG 2 cut(s) 98, 136
Bse118I RCCGGY 1 cut(s) 411
BseBI CCWGG 2 cut(s) 74, 162
BseDI CCNNGG 2 cut(s) 161, 447
BseGI GGATG 1 cut(s) 265
BseLI CCNNNNNNNGG 2 cut(s) 98, 136
BseMII CTCAG 1 cut(s) 201
BseRI GAGGAG 1 cut(s) 10
BshTI ACCGGT 1 cut(s) 411
BsiHKAI GWGCWC 1 cut(s) 72
BsiSI CCGG 3 cut(s) 95, 254, 412
BslFI GGGAC 1 cut(s) 178
BslI CCNNNNNNNGG 2 cut(s) 98, 136
BsmAI GTCTC 2 cut(s) 176, 446
BsmBI CGTCTC 1 cut(s) 446
BsmFI GGGAC 1 cut(s) 178
BsmI GAATGC 1 cut(s) 357
Bso31I GGTCTC 1 cut(s) 176
Bsp119I TTCGAA 1 cut(s) 176
Bsp1286I GDGCHC 1 cut(s) 72
Bsp143I GATC 1 cut(s) 440
BspACI CCGC 3 cut(s) 15, 25, 98
BspCNI CTCAG 1 cut(s) 202
BspLI GGNNCC 3 cut(s) 59, 258, 467
BspMI ACCTGC 1 cut(s) 73
BspT104I TTCGAA 1 cut(s) 176
BspTNI GGTCTC 1 cut(s) 176
BsrFI RCCGGY 1 cut(s) 411
BssAI RCCGGY 1 cut(s) 411
BssECI CCNNGG 2 cut(s) 161, 447
BssMI GATC 1 cut(s) 440
BssT1I CCWWGG 1 cut(s) 447
Bst2UI CCWGG 2 cut(s) 74, 162
Bst4CI ACNGT 4 cut(s) 287, 337, 385, 428
BstBI TTCGAA 1 cut(s) 176
BstC8I GCNNGC 3 cut(s) 49, 100, 327
BstDEI CTNAG 1 cut(s) 210
BstF5I GGATG 1 cut(s) 265
BstH2I RGCGCY 1 cut(s) 161
BstHHI GCGC 1 cut(s) 160
BstKTI GATC 1 cut(s) 443
BstMAI GTCTC 2 cut(s) 176, 446
BstMBI GATC 1 cut(s) 440
BstNI CCWGG 2 cut(s) 74, 162
BstSCI CCNGG 2 cut(s) 72, 160
BstSFI CTRYAG 1 cut(s) 427
BstX2I RGATCY 1 cut(s) 440
BstYI RGATCY 1 cut(s) 440
BtsCI GGATG 1 cut(s) 265
BtsIMutI CAGTG 2 cut(s) 117, 381
BveI ACCTGC 1 cut(s) 73
Cac8I GCNNGC 3 cut(s) 49, 100, 327
CfoI GCGC 1 cut(s) 160
Cfr10I RCCGGY 1 cut(s) 411
CspAI ACCGGT 1 cut(s) 411
CviAII CATG 3 cut(s) 331, 367, 470
CviJI RGCY 8 cut(s) 9, 58, 70, 102, 193, 257, 329, 378
CviKI_1 RGCY 8 cut(s) 9, 58, 70, 102, 193, 257, 329, 378
DdeI CTNAG 1 cut(s) 210
DpnI GATC 1 cut(s) 442
DpnII GATC 1 cut(s) 440
DraI TTTAAA 1 cut(s) 106
EciI GGCGGA 1 cut(s) 4
Ecl136II GAGCTC 1 cut(s) 70
Eco130I CCWWGG 1 cut(s) 447
Eco24I GRGCYC 1 cut(s) 72
Eco31I GGTCTC 1 cut(s) 176
Eco53kI GAGCTC 1 cut(s) 70
Eco57I CTGAAG 2 cut(s) 179, 420
EcoICRI GAGCTC 1 cut(s) 70
EcoRII CCWGG 2 cut(s) 72, 160
EcoT14I CCWWGG 1 cut(s) 447
EcoT22I ATGCAT 1 cut(s) 267
EcoT38I GRGCYC 1 cut(s) 72
ErhI CCWWGG 1 cut(s) 447
Esp3I CGTCTC 1 cut(s) 446
FaeI CATG 3 cut(s) 334, 370, 473
FaqI GGGAC 1 cut(s) 178
FatI CATG 3 cut(s) 330, 366, 469
FauI CCCGC 2 cut(s) 32, 91
FokI GGATG 1 cut(s) 252
FriOI GRGCYC 1 cut(s) 72
GlaI GCGC 1 cut(s) 159
GsuI CTGGAG 2 cut(s) 44, 95
HaeII RGCGCY 1 cut(s) 161
HapII CCGG 3 cut(s) 95, 254, 412
HhaI GCGC 1 cut(s) 160
Hin1II CATG 3 cut(s) 334, 370, 473
Hin6I GCGC 1 cut(s) 158
HinP1I GCGC 1 cut(s) 158
HinfI GANTC 2 cut(s) 166, 314
HpaII CCGG 3 cut(s) 95, 254, 412
HphI GGTGA 1 cut(s) 151
Hpy188III TCNNGA 1 cut(s) 61
HpyAV CCTTC 1 cut(s) 58
HpyCH4III ACNGT 4 cut(s) 287, 337, 385, 428
HpyCH4V TGCA 2 cut(s) 51, 265
HpyF3I CTNAG 1 cut(s) 210
Hsp92II CATG 3 cut(s) 334, 370, 473
HspAI GCGC 1 cut(s) 158
Kzo9I GATC 1 cut(s) 440
LmnI GCTCC 7 cut(s) 14, 63, 67, 75, 155, 262, 383
LweI GCATC 1 cut(s) 274
MaeIII GTNAC 1 cut(s) 115
MalI GATC 1 cut(s) 442
MboI GATC 1 cut(s) 440
MboII GAAGA 2 cut(s) 413, 450
MflI RGATCY 1 cut(s) 440
MhlI GDGCHC 1 cut(s) 72
MlyI GAGTC 1 cut(s) 160
MnlI CCTC 6 cut(s) 22, 28, 31, 102, 261, 279
Mph1103I ATGCAT 1 cut(s) 267
MseI TTAA 1 cut(s) 105
MspI CCGG 3 cut(s) 95, 254, 412
MspR9I CCNGG 2 cut(s) 74, 162
Mva1269I GAATGC 1 cut(s) 357
MvaI CCWGG 2 cut(s) 74, 162
NdeII GATC 1 cut(s) 440
NlaIII CATG 3 cut(s) 334, 370, 473
NlaIV GGNNCC 3 cut(s) 59, 258, 467
NmuCI GTSAC 1 cut(s) 115
NsiI ATGCAT 1 cut(s) 267
NspV TTCGAA 1 cut(s) 176
PctI GAATGC 1 cut(s) 357
PfeI GAWTC 1 cut(s) 314
PfoI TCCNGGA 1 cut(s) 72
PinAI ACCGGT 1 cut(s) 411
PleI GAGTC 1 cut(s) 160
PpsI GAGTC 1 cut(s) 160
Psp124BI GAGCTC 1 cut(s) 72
Psp6I CCWGG 2 cut(s) 72, 160
PspGI CCWGG 2 cut(s) 72, 160
PspN4I GGNNCC 3 cut(s) 59, 258, 467
PsuI RGATCY 1 cut(s) 440
SacI GAGCTC 1 cut(s) 72
SaqAI TTAA 1 cut(s) 105
Sau3AI GATC 1 cut(s) 440
SchI GAGTC 1 cut(s) 160
ScrFI CCNGG 2 cut(s) 74, 162
SduI GDGCHC 1 cut(s) 72
SetI ASST 9 cut(s) 11, 72, 87, 137, 188, 195, 201, 240, 380
SfaNI GCATC 1 cut(s) 274
SfcI CTRYAG 1 cut(s) 427
SfuI TTCGAA 1 cut(s) 176
SsiI CCGC 3 cut(s) 15, 25, 98
SstI GAGCTC 1 cut(s) 72
StyD4I CCNGG 2 cut(s) 72, 160
StyI CCWWGG 1 cut(s) 447
TaaI ACNGT 4 cut(s) 287, 337, 385, 428
TaqI TCGA 1 cut(s) 176
TfiI GAWTC 1 cut(s) 314
Tru1I TTAA 1 cut(s) 105
Tru9I TTAA 1 cut(s) 105
TscAI CASTG 2 cut(s) 124, 388
TseFI GTSAC 1 cut(s) 115
Tsp45I GTSAC 1 cut(s) 115
TspRI CASTG 2 cut(s) 124, 388
Zsp2I ATGCAT 1 cut(s) 267
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.