Rroxscaffold_5G00335710

Potato inhibitor I family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0014904
Physical Location & Seq
Forward (+)
3098871 .. 3104946
6076 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00335710.1

Sequence Viewer

Length: 333 bp
ATGTCTCATCACTCTCATCCTTACCCTCGTCAAAGCGGAACACTGGGATGCCATAGCCTAGGATATAAGTATATATGGCCTGAACTACTGGGAAAGCGTGGGCAGGAAGCCAAAACAATAATTGAGAAAGACAATCCCTTTGTTACCACTGTGATGATAGGACCAGGCACACCGATGTTACTTGATTATTGCTGCAACCGCGTATATATCATGGTGGATGACCATGGCAATGTCCACCGAAACAAAATTGTGAAGCCTAATGTTTTTGAATCTGACCCTAGCCACATCTCAGCGGGGCTGAAGAAAAACAAAGTTTTTTTTGGCAAACCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
potato_inhibit

Protein Analysis

110

Amino Acids

12.42

Weight (kDa)

9.22

Isoelectric Point (pI)

32.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
potato_inhibit PF00280 23 - 80 3e-19 Potato inhibitor I family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014904)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G46860 AT3G50020 AT5G45277
fragaria_vesca FvH4_1g16190
malus_domestica MD15G1392900.v1.1
pyrus_communis pycom08g17930
rosa_chinensis RchiOBHm_Chr2g0105871 RchiOBHm_Chr6g0294471
rosa_roxburghii Rroxscaffold_2G00137770 Rroxscaffold_3G00227700 Rroxscaffold_5G00335710
rosa_rugosa Rorug02G0131200 Rorug02G0131400 Rorug07G0278000
rosa_samantha Rh2BG191900
rosa_wichuraiana Rw6G031180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 201
AciI CCGC 3 cut(s) 36, 199, 293
AcuI CTGAAG 1 cut(s) 320
AgsI TTSAA 1 cut(s) 269
AjnI CCWGG 1 cut(s) 163
Alw26I GTCTC 1 cut(s) 9
AoxI GGCC 1 cut(s) 77
ApeKI GCWGC 1 cut(s) 192
ArsI GACNNNNNNTTYG 2 cut(s) 122, 154
AspA2I CCTAGG 1 cut(s) 58
AspS9I GGNCC 1 cut(s) 161
AvaII GGWCC 1 cut(s) 161
AvrII CCTAGG 1 cut(s) 58
BbvI GCAGC 1 cut(s) 179
BciT130I CCWGG 1 cut(s) 165
BcoDI GTCTC 1 cut(s) 9
BfaI CTAG 3 cut(s) 59, 279, 331
BisI GCNGC 1 cut(s) 193
BlnI CCTAGG 1 cut(s) 58
BlsI GCNGC 1 cut(s) 194
Bme1390I CCNGG 1 cut(s) 165
Bme18I GGWCC 1 cut(s) 161
BmgT120I GGNCC 1 cut(s) 161
BmrFI CCNGG 1 cut(s) 165
BmrI ACTGGG 2 cut(s) 53, 98
BmsI GCATC 1 cut(s) 38
BmuI ACTGGG 2 cut(s) 53, 98
BsaJI CCNNGG 2 cut(s) 58, 223
Bse1I ACTGG 2 cut(s) 48, 93
Bse3DI GCAATG 1 cut(s) 235
BseBI CCWGG 1 cut(s) 165
BseDI CCNNGG 2 cut(s) 58, 223
BseGI GGATG 3 cut(s) 16, 53, 223
BseMI GCAATG 1 cut(s) 235
BseMII CTCAG 1 cut(s) 303
BseNI ACTGG 2 cut(s) 48, 93
BseXI GCAGC 1 cut(s) 179
Bsh1236I CGCG 1 cut(s) 201
BshFI GGCC 1 cut(s) 79
BsmAI GTCTC 1 cut(s) 9
BsnI GGCC 1 cut(s) 79
Bsp19I CCATGG 1 cut(s) 223
BspACI CCGC 3 cut(s) 36, 199, 293
BspANI GGCC 1 cut(s) 79
BspCNI CTCAG 1 cut(s) 302
BspFNI CGCG 1 cut(s) 201
BsrDI GCAATG 1 cut(s) 235
BsrI ACTGG 2 cut(s) 48, 93
BssECI CCNNGG 2 cut(s) 58, 223
BssT1I CCWWGG 2 cut(s) 58, 223
Bst2UI CCWGG 1 cut(s) 165
Bst4CI ACNGT 1 cut(s) 151
BstDEI CTNAG 1 cut(s) 289
BstDSI CCRYGG 1 cut(s) 223
BstF5I GGATG 3 cut(s) 16, 53, 223
BstFNI CGCG 1 cut(s) 201
BstMAI GTCTC 1 cut(s) 9
BstMWI GCNNNNNNNGC 1 cut(s) 198
BstNI CCWGG 1 cut(s) 165
BstSCI CCNGG 1 cut(s) 163
BstUI CGCG 1 cut(s) 201
BstV1I GCAGC 1 cut(s) 179
BsuRI GGCC 1 cut(s) 79
BtgI CCRYGG 1 cut(s) 223
BtsCI GGATG 3 cut(s) 16, 53, 223
BtsIMutI CAGTG 2 cut(s) 41, 147
Cfr13I GGNCC 1 cut(s) 161
CviAII CATG 2 cut(s) 211, 224
CviJI RGCY 6 cut(s) 57, 79, 110, 256, 282, 298
CviKI_1 RGCY 6 cut(s) 57, 79, 110, 256, 282, 298
DdeI CTNAG 1 cut(s) 289
Eco130I CCWWGG 2 cut(s) 58, 223
Eco47I GGWCC 1 cut(s) 161
Eco57I CTGAAG 1 cut(s) 320
EcoRII CCWGG 1 cut(s) 163
EcoT14I CCWWGG 2 cut(s) 58, 223
ErhI CCWWGG 2 cut(s) 58, 223
FaeI CATG 2 cut(s) 214, 227
FaiI YATR 9 cut(s) 54, 66, 72, 74, 76, 205, 207, 212, 225
FatI CATG 2 cut(s) 210, 223
FauI CCCGC 1 cut(s) 286
Fnu4HI GCNGC 1 cut(s) 193
FokI GGATG 3 cut(s) 3, 60, 230
Fsp4HI GCNGC 1 cut(s) 193
FspBI CTAG 3 cut(s) 59, 279, 331
GluI GCNGC 1 cut(s) 193
HaeIII GGCC 1 cut(s) 79
Hin1II CATG 2 cut(s) 214, 227
HinfI GANTC 1 cut(s) 269
Hpy166II GTNNAC 1 cut(s) 235
Hpy188I TCNGA 1 cut(s) 274
Hpy8I GTNNAC 1 cut(s) 235
HpyCH4III ACNGT 1 cut(s) 151
HpyCH4V TGCA 1 cut(s) 195
HpyF10VI GCNNNNNNNGC 1 cut(s) 198
HpyF3I CTNAG 1 cut(s) 289
Hsp92II CATG 2 cut(s) 214, 227
LpnPI CCDG 6 cut(s) 29, 74, 89, 93, 150, 177
Lsp1109I GCAGC 1 cut(s) 179
LweI GCATC 1 cut(s) 38
MaeI CTAG 3 cut(s) 59, 279, 331
MaeIII GTNAC 2 cut(s) 142, 177
MboII GAAGA 1 cut(s) 313
MluCI AATT 2 cut(s) 120, 246
MnlI CCTC 1 cut(s) 36
MslI CAYNNNNRTG 4 cut(s) 46, 152, 173, 228
MspA1I CMGCKG 1 cut(s) 293
MspR9I CCNGG 1 cut(s) 165
MvaI CCWGG 1 cut(s) 165
MvnI CGCG 1 cut(s) 201
MwoI GCNNNNNNNGC 1 cut(s) 198
NcoI CCATGG 1 cut(s) 223
NlaIII CATG 2 cut(s) 214, 227
PfeI GAWTC 1 cut(s) 269
PkrI GCNGC 1 cut(s) 194
Psp6I CCWGG 1 cut(s) 163
PspGI CCWGG 1 cut(s) 163
PspPI GGNCC 1 cut(s) 161
RseI CAYNNNNRTG 4 cut(s) 46, 152, 173, 228
SatI GCNGC 1 cut(s) 193
Sau96I GGNCC 1 cut(s) 161
ScrFI CCNGG 1 cut(s) 165
SfaNI GCATC 1 cut(s) 38
SinI GGWCC 1 cut(s) 161
SmiMI CAYNNNNRTG 4 cut(s) 46, 152, 173, 228
Sse9I AATT 2 cut(s) 120, 246
SsiI CCGC 3 cut(s) 36, 199, 293
SspMI CTAG 3 cut(s) 59, 279, 331
StyD4I CCNGG 1 cut(s) 163
StyI CCWWGG 2 cut(s) 58, 223
TaaI ACNGT 1 cut(s) 151
TasI AATT 2 cut(s) 120, 246
TfiI GAWTC 1 cut(s) 269
TscAI CASTG 2 cut(s) 48, 154
TseI GCWGC 1 cut(s) 192
TspRI CASTG 2 cut(s) 48, 154
VpaK11BI GGWCC 1 cut(s) 161
XmaJI CCTAGG 1 cut(s) 58
XspI CTAG 3 cut(s) 59, 279, 331
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.