FvH4_1g16190

Potato inhibitor I family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0014904
Physical Location & Seq
Forward (+)
9264707 .. 9265288
582 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g16190.t1

Sequence Viewer

Length: 279 bp
ATGTCGTCTGCTGATCCTTACCCTCCTTGTAATACCGGAGATCCACGTCCATGCCGCAGTTTAGATCCACGATACAAACAAGCATGGCCTGAAGTAGTTGGAAAGCCTGTGCAGCTAGCAAAAGCAATAATCGAGAAGGACAATCCCTTTGTTACTGCAGATATTGTAAAACCAGGCACGGGGGTTATTATTGGGGACTATTGTTGCAACCGTGTACGGGTTTATGAGGACAAGCAAGGCAATGTCGTAGCGCACCATGTACCAAGAATAGGCAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
potato_inhibit

Protein Analysis

93

Amino Acids

10.13

Weight (kDa)

8.4

Isoelectric Point (pI)

25.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
potato_inhibit PF00280 26 - 91 4.7e-20 Potato inhibitor I family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014904)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G46860 AT3G50020 AT5G45277
fragaria_vesca FvH4_1g16190
malus_domestica MD15G1392900.v1.1
pyrus_communis pycom08g17930
rosa_chinensis RchiOBHm_Chr2g0105871 RchiOBHm_Chr6g0294471
rosa_roxburghii Rroxscaffold_2G00137770 Rroxscaffold_3G00227700 Rroxscaffold_5G00335710
rosa_rugosa Rorug02G0131200 Rorug02G0131400 Rorug07G0278000
rosa_samantha Rh2BG191900
rosa_wichuraiana Rw6G031180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 55
AclWI GGATC 3 cut(s) 8, 35, 59
AcuI CTGAAG 1 cut(s) 111
AfaI GTAC 2 cut(s) 216, 261
AfiI CCNNNNNNNGG 3 cut(s) 179, 217, 269
AjiI CACGTC 1 cut(s) 47
AjnI CCWGG 1 cut(s) 172
AluBI AGCT 1 cut(s) 115
AluI AGCT 1 cut(s) 115
AlwI GGATC 3 cut(s) 8, 35, 59
AoxI GGCC 1 cut(s) 86
ApeKI GCWGC 1 cut(s) 112
ArsI GACNNNNNNTTYG 2 cut(s) 131, 163
AspLEI GCGC 1 cut(s) 253
AsuNHI GCTAGC 1 cut(s) 115
BbvI GCAGC 1 cut(s) 124
BciT130I CCWGG 1 cut(s) 174
BfaI CTAG 1 cut(s) 116
BfmI CTRYAG 1 cut(s) 156
BisI GCNGC 2 cut(s) 55, 113
BlsI GCNGC 2 cut(s) 56, 114
Bme1390I CCNGG 1 cut(s) 174
BmgBI CACGTC 1 cut(s) 47
BmrFI CCNGG 1 cut(s) 174
BmtI GCTAGC 1 cut(s) 119
BsaWI WCCGGW 1 cut(s) 35
Bsc4I CCNNNNNNNGG 3 cut(s) 179, 217, 269
Bse3DI GCAATG 1 cut(s) 247
BseBI CCWGG 1 cut(s) 174
BseLI CCNNNNNNNGG 3 cut(s) 179, 217, 269
BseMI GCAATG 1 cut(s) 247
BseXI GCAGC 1 cut(s) 124
BsgI GTGCAG 1 cut(s) 131
BshFI GGCC 1 cut(s) 88
BsiSI CCGG 1 cut(s) 36
BslFI GGGAC 1 cut(s) 209
BslI CCNNNNNNNGG 3 cut(s) 179, 217, 269
BsmFI GGGAC 1 cut(s) 209
BsnI GGCC 1 cut(s) 88
Bsp143I GATC 3 cut(s) 13, 40, 64
BspACI CCGC 1 cut(s) 55
BspANI GGCC 1 cut(s) 88
BspMAI CTGCAG 1 cut(s) 160
BspOI GCTAGC 1 cut(s) 119
BspPI GGATC 3 cut(s) 8, 35, 59
BsrDI GCAATG 1 cut(s) 247
BssMI GATC 3 cut(s) 13, 40, 64
Bst2UI CCWGG 1 cut(s) 174
Bst4CI ACNGT 1 cut(s) 212
BstC8I GCNNGC 1 cut(s) 117
BstHHI GCGC 1 cut(s) 253
BstKTI GATC 3 cut(s) 16, 43, 67
BstMBI GATC 3 cut(s) 13, 40, 64
BstMWI GCNNNNNNNGC 1 cut(s) 112
BstNI CCWGG 1 cut(s) 174
BstSCI CCNGG 1 cut(s) 172
BstSFI CTRYAG 1 cut(s) 156
BstV1I GCAGC 1 cut(s) 124
BstX2I RGATCY 2 cut(s) 40, 64
BstYI RGATCY 2 cut(s) 40, 64
BsuRI GGCC 1 cut(s) 88
BtrI CACGTC 1 cut(s) 47
Cac8I GCNNGC 1 cut(s) 117
CfoI GCGC 1 cut(s) 253
Csp6I GTAC 2 cut(s) 215, 260
CviAII CATG 3 cut(s) 51, 84, 257
CviJI RGCY 3 cut(s) 88, 106, 115
CviKI_1 RGCY 3 cut(s) 88, 106, 115
CviQI GTAC 2 cut(s) 215, 260
DpnI GATC 3 cut(s) 15, 42, 66
DpnII GATC 3 cut(s) 13, 40, 64
Eco57I CTGAAG 1 cut(s) 111
EcoRII CCWGG 1 cut(s) 172
FaeI CATG 3 cut(s) 54, 87, 260
FaiI YATR 4 cut(s) 52, 85, 225, 258
FaqI GGGAC 1 cut(s) 209
FatI CATG 3 cut(s) 50, 83, 256
Fnu4HI GCNGC 2 cut(s) 55, 113
Fsp4HI GCNGC 2 cut(s) 55, 113
FspBI CTAG 1 cut(s) 116
GlaI GCGC 1 cut(s) 252
GluI GCNGC 2 cut(s) 55, 113
HaeIII GGCC 1 cut(s) 88
HapII CCGG 1 cut(s) 36
HhaI GCGC 1 cut(s) 253
Hin1II CATG 3 cut(s) 54, 87, 260
Hin6I GCGC 1 cut(s) 251
HinP1I GCGC 1 cut(s) 251
HpaII CCGG 1 cut(s) 36
Hpy166II GTNNAC 1 cut(s) 215
Hpy188III TCNNGA 1 cut(s) 133
Hpy8I GTNNAC 1 cut(s) 215
HpyAV CCTTC 1 cut(s) 130
HpyCH4III ACNGT 1 cut(s) 212
HpyCH4IV ACGT 1 cut(s) 46
HpyCH4V TGCA 3 cut(s) 112, 158, 207
HpyF10VI GCNNNNNNNGC 1 cut(s) 112
HpySE526I ACGT 1 cut(s) 46
Hsp92II CATG 3 cut(s) 54, 87, 260
HspAI GCGC 1 cut(s) 251
Kzo9I GATC 3 cut(s) 13, 40, 64
LpnPI CCDG 5 cut(s) 49, 102, 120, 159, 186
Lsp1109I GCAGC 1 cut(s) 124
MaeI CTAG 1 cut(s) 116
MaeII ACGT 1 cut(s) 46
MaeIII GTNAC 1 cut(s) 151
MalI GATC 3 cut(s) 15, 42, 66
MboI GATC 3 cut(s) 13, 40, 64
MflI RGATCY 2 cut(s) 40, 64
MmeI TCCRAC 1 cut(s) 79
MnlI CCTC 2 cut(s) 33, 220
MslI CAYNNNNRTG 1 cut(s) 49
MspI CCGG 1 cut(s) 36
MspR9I CCNGG 1 cut(s) 174
MvaI CCWGG 1 cut(s) 174
MwoI GCNNNNNNNGC 1 cut(s) 112
NdeII GATC 3 cut(s) 13, 40, 64
NheI GCTAGC 1 cut(s) 115
NlaIII CATG 3 cut(s) 54, 87, 260
PkrI GCNGC 2 cut(s) 56, 114
Psp6I CCWGG 1 cut(s) 172
PspGI CCWGG 1 cut(s) 172
PstI CTGCAG 1 cut(s) 160
PsuI RGATCY 2 cut(s) 40, 64
RsaI GTAC 2 cut(s) 216, 261
RsaNI GTAC 2 cut(s) 215, 260
RseI CAYNNNNRTG 1 cut(s) 49
SatI GCNGC 2 cut(s) 55, 113
Sau3AI GATC 3 cut(s) 13, 40, 64
ScrFI CCNGG 1 cut(s) 174
SetI ASST 2 cut(s) 49, 117
SfcI CTRYAG 1 cut(s) 156
SmiMI CAYNNNNRTG 1 cut(s) 49
SsiI CCGC 1 cut(s) 55
SspMI CTAG 1 cut(s) 116
StyD4I CCNGG 1 cut(s) 172
TaaI ACNGT 1 cut(s) 212
TaiI ACGT 1 cut(s) 49
TaqI TCGA 1 cut(s) 132
TauI GCSGC 1 cut(s) 57
TseI GCWGC 1 cut(s) 112
XspI CTAG 1 cut(s) 116
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.