RchiOBHm_Chr2g0105871

Potato inhibitor I family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0014904
Physical Location & Seq
Forward (+)
17139848 .. 17140227
380 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ48005

Sequence Viewer

Length: 264 bp
ATGTCTGATCCTTACCCTCCTTGTAACAGCGGAGCAGTGCCATGCCCCAGTCAAGGAGCAAAATACAAACAAATATGGCCTGAACTAGTTGGAAAGCCCGTGCAGCTTGCCAAAACAATAATCGAGAAGGACAATCCCTTTGTTACCGCAGAGATCACAAAACTAGGCATGGGGATAATTTTTAACTATTGCTGCAACCGTGTATGGATTTGGGAAGATAACCTTGGCAATGTTGCAGAACACTATATACCAAAAATAGGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
potato_inhibit

Protein Analysis

87

Amino Acids

9.71

Weight (kDa)

6.53

Isoelectric Point (pI)

38.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
potato_inhibit PF00280 23 - 87 1.2e-18 Potato inhibitor I family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014904)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G46860 AT3G50020 AT5G45277
fragaria_vesca FvH4_1g16190
malus_domestica MD15G1392900.v1.1
pyrus_communis pycom08g17930
rosa_chinensis RchiOBHm_Chr2g0105871 RchiOBHm_Chr6g0294471
rosa_roxburghii Rroxscaffold_2G00137770 Rroxscaffold_3G00227700 Rroxscaffold_5G00335710
rosa_rugosa Rorug02G0131200 Rorug02G0131400 Rorug07G0278000
rosa_samantha Rh2BG191900
rosa_wichuraiana Rw6G031180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 30, 147
AclWI GGATC 1 cut(s) 2
AfiI CCNNNNNNNGG 2 cut(s) 53, 257
AhlI ACTAGT 1 cut(s) 85
AjuI GAANNNNNNNTTGG 2 cut(s) 207, 239
AluBI AGCT 1 cut(s) 106
AluI AGCT 1 cut(s) 106
AlwI GGATC 1 cut(s) 2
AoxI GGCC 1 cut(s) 77
ApeKI GCWGC 2 cut(s) 103, 192
ArsI GACNNNNNNTTYG 2 cut(s) 122, 154
BbvI GCAGC 2 cut(s) 115, 179
BcuI ACTAGT 1 cut(s) 85
BfaI CTAG 2 cut(s) 86, 164
BisI GCNGC 2 cut(s) 104, 193
BlsI GCNGC 2 cut(s) 105, 194
BmrI ACTGGG 1 cut(s) 42
BmuI ACTGGG 1 cut(s) 42
BsaJI CCNNGG 1 cut(s) 223
Bsc4I CCNNNNNNNGG 2 cut(s) 53, 257
Bse1I ACTGG 1 cut(s) 48
Bse3DI GCAATG 1 cut(s) 235
BseDI CCNNGG 1 cut(s) 223
BseLI CCNNNNNNNGG 2 cut(s) 53, 257
BseMI GCAATG 1 cut(s) 235
BseNI ACTGG 1 cut(s) 48
BseXI GCAGC 2 cut(s) 115, 179
BsgI GTGCAG 1 cut(s) 122
BshFI GGCC 1 cut(s) 79
BslI CCNNNNNNNGG 2 cut(s) 53, 257
BsnI GGCC 1 cut(s) 79
Bsp143I GATC 2 cut(s) 7, 153
BspACI CCGC 2 cut(s) 30, 147
BspANI GGCC 1 cut(s) 79
BspPI GGATC 1 cut(s) 2
BsrDI GCAATG 1 cut(s) 235
BsrI ACTGG 1 cut(s) 48
BssECI CCNNGG 1 cut(s) 223
BssMI GATC 2 cut(s) 7, 153
BssT1I CCWWGG 1 cut(s) 223
Bst4CI ACNGT 1 cut(s) 200
BstC8I GCNNGC 1 cut(s) 108
BstKTI GATC 2 cut(s) 10, 156
BstMBI GATC 2 cut(s) 7, 153
BstMWI GCNNNNNNNGC 1 cut(s) 103
BstV1I GCAGC 2 cut(s) 115, 179
BsuRI GGCC 1 cut(s) 79
BtsI GCAGTG 1 cut(s) 42
BtsIMutI CAGTG 1 cut(s) 42
Cac8I GCNNGC 1 cut(s) 108
CviAII CATG 2 cut(s) 42, 169
CviJI RGCY 4 cut(s) 79, 97, 106, 261
CviKI_1 RGCY 4 cut(s) 79, 97, 106, 261
DpnI GATC 2 cut(s) 9, 155
DpnII GATC 2 cut(s) 7, 153
Eco130I CCWWGG 1 cut(s) 223
EcoT14I CCWWGG 1 cut(s) 223
ErhI CCWWGG 1 cut(s) 223
FaeI CATG 2 cut(s) 45, 172
FaiI YATR 6 cut(s) 43, 76, 170, 205, 246, 248
FalI AAGNNNNNCTT 2 cut(s) 207, 239
FatI CATG 2 cut(s) 41, 168
Fnu4HI GCNGC 2 cut(s) 104, 193
Fsp4HI GCNGC 2 cut(s) 104, 193
FspBI CTAG 2 cut(s) 86, 164
GluI GCNGC 2 cut(s) 104, 193
HaeIII GGCC 1 cut(s) 79
Hin1II CATG 2 cut(s) 45, 172
Hpy188I TCNGA 1 cut(s) 7
Hpy188III TCNNGA 1 cut(s) 124
HpyAV CCTTC 1 cut(s) 121
HpyCH4III ACNGT 1 cut(s) 200
HpyCH4V TGCA 3 cut(s) 103, 195, 236
HpyF10VI GCNNNNNNNGC 1 cut(s) 103
Hsp92II CATG 2 cut(s) 45, 172
Kzo9I GATC 2 cut(s) 7, 153
LmnI GCTCC 2 cut(s) 32, 56
LpnPI CCDG 2 cut(s) 61, 93
Lsp1109I GCAGC 2 cut(s) 115, 179
MaeI CTAG 2 cut(s) 86, 164
MaeIII GTNAC 2 cut(s) 23, 142
MalI GATC 2 cut(s) 9, 155
MboI GATC 2 cut(s) 7, 153
MboII GAAGA 1 cut(s) 227
MluCI AATT 1 cut(s) 177
MmeI TCCRAC 1 cut(s) 70
MnlI CCTC 1 cut(s) 27
MseI TTAA 1 cut(s) 183
MspA1I CMGCKG 1 cut(s) 30
MwoI GCNNNNNNNGC 1 cut(s) 103
NdeII GATC 2 cut(s) 7, 153
NlaIII CATG 2 cut(s) 45, 172
PkrI GCNGC 2 cut(s) 105, 194
PsrI GAACNNNNNNTAC 2 cut(s) 231, 263
SaqAI TTAA 1 cut(s) 183
SatI GCNGC 2 cut(s) 104, 193
Sau3AI GATC 2 cut(s) 7, 153
SetI ASST 2 cut(s) 108, 225
SpeI ACTAGT 1 cut(s) 85
Sse9I AATT 1 cut(s) 177
SsiI CCGC 2 cut(s) 30, 147
SspMI CTAG 2 cut(s) 86, 164
StyI CCWWGG 1 cut(s) 223
TaaI ACNGT 1 cut(s) 200
TaqI TCGA 1 cut(s) 123
TasI AATT 1 cut(s) 177
Tru1I TTAA 1 cut(s) 183
Tru9I TTAA 1 cut(s) 183
TscAI CASTG 1 cut(s) 42
TseI GCWGC 2 cut(s) 103, 192
TspRI CASTG 1 cut(s) 42
XspI CTAG 2 cut(s) 86, 164
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.