Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0014904

Physical Location & Seq

Genomic Coordinates Forward (+)

11921883 .. 11923194

Gene Structure 1312 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00227700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGGAGGCAGAGGGACAAAGAAGAAAGAAGCTCAAGCAGAGATTCTATGCTATCCGACCTGTTGTCCCAAATGTTTCGAAAATGGACAAGGCATCTCTGCTTGGAGACTCCATCTCTTACATCACCGAGCTCAAAACGAAGCTGCAAATGACGGAGTGCGACAAGGAGTACCTCCACGAGCAATTCGAGACCGAAGCCGGATCATGCAGAAATCCCAAAAAATGCTGTAGTGAAGGATATAAATATATATGGCCTGAACTAGTTGGAAAGCCTGGAAGTGTAGCCAAAAAAATAATCGAGCATGATAACCCATTGGTTACCGTCTTGATCGTACCACCAGGCACACTCGAACCTGGAGATTTCTGTTGCAACCGTGTGTATTTCTATGAGAATCGCCATGACATTGTTACAAAGGATCGCATACCACAAGTCGGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005509 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006952 GO:0006970 GO:0006972 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009628 GO:0009651 GO:0009718 GO:0009719 GO:0009725 GO:0009753 GO:0009812 GO:0009813 GO:0009889 GO:0009891 GO:0009893 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0042221 GO:0042440 GO:0042538 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043425 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0046148 GO:0046283 GO:0046872 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901576 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 map04016 map04075

Pfam Domains

Protein Families

HLH bHLH-MYC_N

Protein Analysis

145

Amino Acids

16.62

Weight (kDa)

8.48

Isoelectric Point (pI)

42.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
potato_inhibit	PF00280	81 - 145	6.4e-18	Potato inhibitor I family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0014904)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G46860 AT3G50020 AT5G45277
fragaria_vesca	FvH4_1g16190
malus_domestica	MD15G1392900.v1.1
pyrus_communis	pycom08g17930
rosa_chinensis	RchiOBHm_Chr2g0105871 RchiOBHm_Chr6g0294471
rosa_roxburghii	Rroxscaffold_2G00137770 Rroxscaffold_3G00227700 Rroxscaffold_5G00335710
rosa_rugosa	Rorug02G0131200 Rorug02G0131400 Rorug07G0278000
rosa_samantha	Rh2BG191900
rosa_wichuraiana	Rw6G031180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	208, 423
AfaI	GTAC	2 cut(s)	170, 333
AfiI	CCNNNNNNNGG	1 cut(s)	431
AhdI	GACNNNNNGTC	1 cut(s)	62
AhlI	ACTAGT	1 cut(s)	259
AjnI	CCWGG	3 cut(s)	271, 337, 352
AluBI	AGCT	3 cut(s)	31, 130, 142
AluI	AGCT	3 cut(s)	31, 130, 142
Alw21I	GWGCWC	1 cut(s)	132
Alw26I	GTCTC	2 cut(s)	99, 182
AlwI	GGATC	2 cut(s)	208, 423
AoxI	GGCC	1 cut(s)	251
ApeKI	GCWGC	1 cut(s)	142
AsuHPI	GGTGA	1 cut(s)	115
AsuII	TTCGAA	1 cut(s)	77
BanII	GRGCYC	1 cut(s)	132
BauI	CACGAG	1 cut(s)	176
Bbv12I	GWGCWC	1 cut(s)	132
BbvI	GCAGC	1 cut(s)	129
BccI	CCATC	1 cut(s)	119
BciT130I	CCWGG	3 cut(s)	273, 339, 354
BcoDI	GTCTC	2 cut(s)	99, 182
BcuI	ACTAGT	1 cut(s)	259
BfaI	CTAG	1 cut(s)	260
BfmI	CTRYAG	1 cut(s)	226
BisI	GCNGC	1 cut(s)	143
BlsI	GCNGC	1 cut(s)	144
Bme1390I	CCNGG	3 cut(s)	273, 339, 354
BmeRI	GACNNNNNGTC	1 cut(s)	62
BmrFI	CCNGG	3 cut(s)	273, 339, 354
BmsI	GCATC	1 cut(s)	101
BpmI	CTGGAG	1 cut(s)	375
Bpu14I	TTCGAA	1 cut(s)	77
BpuEI	CTTGAG	1 cut(s)	17
BsaI	GGTCTC	1 cut(s)	182
Bsc4I	CCNNNNNNNGG	1 cut(s)	431
BseBI	CCWGG	3 cut(s)	273, 339, 354
BseLI	CCNNNNNNNGG	1 cut(s)	431
BseXI	GCAGC	1 cut(s)	129
BshFI	GGCC	1 cut(s)	253
BsiHKAI	GWGCWC	1 cut(s)	132
BsiSI	CCGG	1 cut(s)	198
BslFI	GGGAC	2 cut(s)	27, 50
BslI	CCNNNNNNNGG	1 cut(s)	431
BsmAI	GTCTC	2 cut(s)	99, 182
BsmFI	GGGAC	2 cut(s)	27, 50
BsnI	GGCC	1 cut(s)	253
Bso31I	GGTCTC	1 cut(s)	182
Bsp119I	TTCGAA	1 cut(s)	77
Bsp1286I	GDGCHC	1 cut(s)	132
Bsp143I	GATC	3 cut(s)	200, 327, 415
BspANI	GGCC	1 cut(s)	253
BspPI	GGATC	2 cut(s)	208, 423
BspT104I	TTCGAA	1 cut(s)	77
BspTNI	GGTCTC	1 cut(s)	182
BssMI	GATC	3 cut(s)	200, 327, 415
BssSI	CACGAG	1 cut(s)	176
Bst2BI	CACGAG	1 cut(s)	176
Bst2UI	CCWGG	3 cut(s)	273, 339, 354
Bst4CI	ACNGT	2 cut(s)	322, 374
BstBI	TTCGAA	1 cut(s)	77
BstEII	GGTNACC	1 cut(s)	316
BstKTI	GATC	3 cut(s)	203, 330, 418
BstMAI	GTCTC	2 cut(s)	99, 182
BstMBI	GATC	3 cut(s)	200, 327, 415
BstNI	CCWGG	3 cut(s)	273, 339, 354
BstPI	GGTNACC	1 cut(s)	316
BstSCI	CCNGG	3 cut(s)	271, 337, 352
BstSFI	CTRYAG	1 cut(s)	226
BstV1I	GCAGC	1 cut(s)	129
BsuRI	GGCC	1 cut(s)	253
Csp6I	GTAC	2 cut(s)	169, 332
CviAII	CATG	3 cut(s)	204, 302, 398
CviJI	RGCY	7 cut(s)	31, 130, 142, 197, 253, 271, 284
CviKI_1	RGCY	7 cut(s)	31, 130, 142, 197, 253, 271, 284
CviQI	GTAC	2 cut(s)	169, 332
DpnI	GATC	3 cut(s)	202, 329, 417
DpnII	GATC	3 cut(s)	200, 327, 415
DriI	GACNNNNNGTC	1 cut(s)	62
Eam1105I	GACNNNNNGTC	1 cut(s)	62
Ecl136II	GAGCTC	1 cut(s)	130
Eco24I	GRGCYC	1 cut(s)	132
Eco31I	GGTCTC	1 cut(s)	182
Eco53kI	GAGCTC	1 cut(s)	130
Eco91I	GGTNACC	1 cut(s)	316
EcoICRI	GAGCTC	1 cut(s)	130
EcoO65I	GGTNACC	1 cut(s)	316
EcoRII	CCWGG	3 cut(s)	271, 337, 352
EcoT38I	GRGCYC	1 cut(s)	132
FaeI	CATG	3 cut(s)	207, 305, 401
FaqI	GGGAC	2 cut(s)	27, 50
FatI	CATG	3 cut(s)	203, 301, 397
Fnu4HI	GCNGC	1 cut(s)	143
FriOI	GRGCYC	1 cut(s)	132
Fsp4HI	GCNGC	1 cut(s)	143
FspBI	CTAG	1 cut(s)	260
GluI	GCNGC	1 cut(s)	143
GsuI	CTGGAG	1 cut(s)	375
HaeIII	GGCC	1 cut(s)	253
HapII	CCGG	1 cut(s)	198
Hin1II	CATG	3 cut(s)	207, 305, 401
HinfI	GANTC	3 cut(s)	42, 107, 391
HpaII	CCGG	1 cut(s)	198
HphI	GGTGA	1 cut(s)	115
Hpy188I	TCNGA	2 cut(s)	56, 434
Hpy188III	TCNNGA	2 cut(s)	187, 325
HpyAV	CCTTC	1 cut(s)	227
HpyCH4III	ACNGT	2 cut(s)	322, 374
HpyCH4V	TGCA	3 cut(s)	145, 207, 369
Hsp92II	CATG	3 cut(s)	207, 305, 401
Kzo9I	GATC	3 cut(s)	200, 327, 415
LpnPI	CCDG	9 cut(s)	72, 211, 258, 267, 285, 324, 339, 351, 366
Lsp1109I	GCAGC	1 cut(s)	129
LweI	GCATC	1 cut(s)	101
MaeI	CTAG	1 cut(s)	260
MaeIII	GTNAC	2 cut(s)	316, 406
MalI	GATC	3 cut(s)	202, 329, 417
MboI	GATC	3 cut(s)	200, 327, 415
MboII	GAAGA	1 cut(s)	33
MhlI	GDGCHC	1 cut(s)	132
MluCI	AATT	1 cut(s)	182
MlyI	GAGTC	1 cut(s)	101
MmeI	TCCRAC	3 cut(s)	79, 244, 412
MnlI	CCTC	2 cut(s)	4, 182
MspI	CCGG	1 cut(s)	198
MspR9I	CCNGG	3 cut(s)	273, 339, 354
MvaI	CCWGG	3 cut(s)	273, 339, 354
NdeII	GATC	3 cut(s)	200, 327, 415
NlaIII	CATG	3 cut(s)	207, 305, 401
NspV	TTCGAA	1 cut(s)	77
PcsI	WCGNNNNNNNCGW	1 cut(s)	183
PfeI	GAWTC	2 cut(s)	42, 391
PkrI	GCNGC	1 cut(s)	144
PleI	GAGTC	1 cut(s)	101
PpsI	GAGTC	1 cut(s)	101
Psp124BI	GAGCTC	1 cut(s)	132
Psp6I	CCWGG	3 cut(s)	271, 337, 352
PspEI	GGTNACC	1 cut(s)	316
PspGI	CCWGG	3 cut(s)	271, 337, 352
RsaI	GTAC	2 cut(s)	170, 333
RsaNI	GTAC	2 cut(s)	169, 332
SacI	GAGCTC	1 cut(s)	132
SatI	GCNGC	1 cut(s)	143
Sau3AI	GATC	3 cut(s)	200, 327, 415
SchI	GAGTC	1 cut(s)	101
ScrFI	CCNGG	3 cut(s)	273, 339, 354
SduI	GDGCHC	1 cut(s)	132
SetI	ASST	6 cut(s)	33, 61, 132, 144, 174, 355
SfaNI	GCATC	1 cut(s)	101
SfcI	CTRYAG	1 cut(s)	226
SfuI	TTCGAA	1 cut(s)	77
SmlI	CTYRAG	1 cut(s)	32
SmoI	CTYRAG	1 cut(s)	32
SpeI	ACTAGT	1 cut(s)	259
Sse9I	AATT	1 cut(s)	182
SspMI	CTAG	1 cut(s)	260
SstI	GAGCTC	1 cut(s)	132
StyD4I	CCNGG	3 cut(s)	271, 337, 352
TaaI	ACNGT	2 cut(s)	322, 374
TaqI	TCGA	4 cut(s)	77, 186, 297, 348
TaqII	GACCGA	1 cut(s)	206
TasI	AATT	1 cut(s)	182
TfiI	GAWTC	2 cut(s)	42, 391
TseI	GCWGC	1 cut(s)	142
TspGWI	ACGGA	1 cut(s)	167
XspI	CTAG	1 cut(s)	260

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.