Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001626

Physical Location & Seq

Genomic Coordinates Reverse (-)

19246936 .. 19249200

Gene Structure 2265 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G51880.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGAAAACAGCAAAGGGGAAAGATAAAGTTAAGACCACAAAGGAAGCCTTGAAGCCAGTTGATGACAGAAAGGTGGGAAAGAGGAAGGCACCGGCTGAGAAGCCTACTAAACGAGAGACTCGTAAAGAGAAGAAGGCTAAAAAGGACCCAAACAAACCAAAAAGAGCTCCTAGTGCCTTCTTTGTCTTTCTAGAAGATTTTAGGGTCACGTTCAAGAAAGAAAATCCAAATGTGAAGGCCGTCTCTGCTGTTGGGAAAGCTGGAGGGCAGAAATGGAAGTCAATGTCTCAAGCTGAAAAAGCTCCATATGAAGAGAAAGCTGCAAAAAGGAAAGCTGAATATGAGAAGCAAATGGATGCATACAACAAAAACTTGGAGGAAGGGAGTGATGAATCTGAAAAGTCTAGATCTGAGATAAATGATGAAGATGAAGCCAGTGGGGAGGAAGAACTATTAGAGAAGGAAGCGGCAGGTGATGATGAAGAAGAAGAAGAGGAAGAAGATGACGATGATGATGACGACGAGGAAGAAGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000785 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003700 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006325 GO:0006333 GO:0006355 GO:0006996 GO:0008150 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0030527 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051276 GO:0060255 GO:0065007 GO:0071840 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03410 ko04140 ko04217 map03410 map04140 map04217

Pfam Domains

Protein Families

HMG_box

Protein Analysis

178

Amino Acids

20.26

Weight (kDa)

4.91

Isoelectric Point (pI)

56.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HMG_box_2	PF09011	50 - 122	2.8e-16	HMG-box domain
HMG_box	PF00505	53 - 122	3.3e-23	HMG (high mobility group) box
HMG_WDHD1	PF24815	58 - 106	6.4e-12	WDHD1 HMG box

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001626)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51880 AT3G51880 AT3G51880 AT3G51880 AT3G51880
fragaria_vesca	FvH4_6g11530 FvH4_6g11530 FvH4_6g11530 FvH4_6g11530 FvH4_7g24360 FvH4_7g24360 FvH4_7g24360
malus_domestica	MD01G1132900.v1.1 MD07G1220600.v1.1
prunus_persica	Prupe.2G249000_v2.0.a1 Prupe.2G249000_v2.0.a1 Prupe.6G276300_v2.0.a1 Prupe.6G276300_v2.0.a1 Prupe.6G276300_v2.0.a1 Prupe.6G276300_v2.0.a1
pyrus_communis	pycom01g16950 pycom07g19960
rosa_chinensis	RchiOBHm_Chr1g0370021 RchiOBHm_Chr3g0463231
rosa_laevigata	RLG00000024799
rosa_multiflora	Rmu_co8427781.1_g000001 Rmu_sc0005056.1_g000014 Rmu_sc0008079.1_g000019 Rmu_sc0022743.1_g000005 Rmu_sc0022743.1_g000006
rosa_roxburghii	Rroxscaffold_4G00286860 Rroxscaffold_4G00287170 Rroxscaffold_6G00416770
rosa_rugosa	Rorug01G0353500 Rorug03G0062700 Rorug03G0062700 Rorug03G0062700 Rorug03G0062800 Rorug03G0062800
rosa_samantha	Rh1AG362200 Rh1BG325400 Rh1CG338700 Rh1DG355900 Rh3AG120800 Rh3BG125300 Rh3CG127300 Rh3DG126500
rosa_wichuraiana	Rw1G031870 Rw3G010260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	461
Acc36I	ACCTGC	1 cut(s)	461
AccB1I	GGYRCC	1 cut(s)	88
AciI	CCGC	1 cut(s)	467
AgsI	TTSAA	2 cut(s)	52, 214
AluBI	AGCT	6 cut(s)	167, 260, 293, 302, 320, 335
AluI	AGCT	6 cut(s)	167, 260, 293, 302, 320, 335
Alw21I	GWGCWC	1 cut(s)	169
Alw26I	GTCTC	3 cut(s)	110, 247, 291
AoxI	GGCC	1 cut(s)	237
ApeKI	GCWGC	1 cut(s)	320
AspS9I	GGNCC	1 cut(s)	145
AsuHPI	GGTGA	1 cut(s)	485
AvaII	GGWCC	1 cut(s)	145
BanI	GGYRCC	1 cut(s)	88
BanII	GRGCYC	1 cut(s)	169
Bbv12I	GWGCWC	1 cut(s)	169
BbvI	GCAGC	1 cut(s)	307
BceAI	ACGGC	1 cut(s)	224
BcoDI	GTCTC	3 cut(s)	110, 247, 291
BfaI	CTAG	3 cut(s)	171, 191, 405
BfuAI	ACCTGC	1 cut(s)	461
BglII	AGATCT	1 cut(s)	407
BisI	GCNGC	2 cut(s)	321, 468
BlsI	GCNGC	2 cut(s)	322, 469
Bme18I	GGWCC	1 cut(s)	145
BmgT120I	GGNCC	1 cut(s)	145
BmiI	GGNNCC	2 cut(s)	90, 147
BmsI	GCATC	1 cut(s)	346
BpmI	CTGGAG	1 cut(s)	282
BpuEI	CTTGAG	1 cut(s)	273
Bse118I	RCCGGY	1 cut(s)	91
Bse1I	ACTGG	2 cut(s)	56, 435
BseGI	GGATG	1 cut(s)	361
BseMII	CTCAG	2 cut(s)	87, 402
BseNI	ACTGG	2 cut(s)	56, 435
BseXI	GCAGC	1 cut(s)	307
BshFI	GGCC	1 cut(s)	239
BshNI	GGYRCC	1 cut(s)	88
BsiHKAI	GWGCWC	1 cut(s)	169
BsiSI	CCGG	1 cut(s)	92
BsmAI	GTCTC	3 cut(s)	110, 247, 291
BsmBI	CGTCTC	1 cut(s)	247
BsnI	GGCC	1 cut(s)	239
Bsp1286I	GDGCHC	1 cut(s)	169
Bsp143I	GATC	1 cut(s)	407
BspACI	CCGC	1 cut(s)	467
BspANI	GGCC	1 cut(s)	239
BspCNI	CTCAG	2 cut(s)	88, 403
BspLI	GGNNCC	2 cut(s)	90, 147
BspMI	ACCTGC	1 cut(s)	461
BspT107I	GGYRCC	1 cut(s)	88
BsrFI	RCCGGY	1 cut(s)	91
BsrI	ACTGG	2 cut(s)	56, 435
BssAI	RCCGGY	1 cut(s)	91
BssMI	GATC	1 cut(s)	407
Bst6I	CTCTTC	2 cut(s)	306, 486
BstDEI	CTNAG	2 cut(s)	96, 411
BstF5I	GGATG	1 cut(s)	361
BstKTI	GATC	1 cut(s)	410
BstMAI	GTCTC	3 cut(s)	110, 247, 291
BstMBI	GATC	1 cut(s)	407
BstMWI	GCNNNNNNNGC	3 cut(s)	173, 245, 299
BstV1I	GCAGC	1 cut(s)	307
BstX2I	RGATCY	1 cut(s)	407
BstYI	RGATCY	1 cut(s)	407
BsuRI	GGCC	1 cut(s)	239
BtsCI	GGATG	1 cut(s)	361
BtsIMutI	CAGTG	1 cut(s)	442
BveI	ACCTGC	1 cut(s)	461
Cfr10I	RCCGGY	1 cut(s)	91
Cfr13I	GGNCC	1 cut(s)	145
DdeI	CTNAG	2 cut(s)	96, 411
DpnI	GATC	1 cut(s)	409
DpnII	GATC	1 cut(s)	407
Eam1104I	CTCTTC	2 cut(s)	306, 486
EarI	CTCTTC	2 cut(s)	306, 486
Ecl136II	GAGCTC	1 cut(s)	167
Eco24I	GRGCYC	1 cut(s)	169
Eco47I	GGWCC	1 cut(s)	145
Eco53kI	GAGCTC	1 cut(s)	167
EcoICRI	GAGCTC	1 cut(s)	167
EcoO109I	RGGNCCY	1 cut(s)	145
EcoT22I	ATGCAT	1 cut(s)	361
EcoT38I	GRGCYC	1 cut(s)	169
Esp3I	CGTCTC	1 cut(s)	247
FaiI	YATR	4 cut(s)	307, 309, 342, 361
FalI	AAGNNNNNCTT	2 cut(s)	32, 64
FauNDI	CATATG	1 cut(s)	307
Fnu4HI	GCNGC	2 cut(s)	321, 468
FokI	GGATG	1 cut(s)	368
FriOI	GRGCYC	1 cut(s)	169
Fsp4HI	GCNGC	2 cut(s)	321, 468
FspBI	CTAG	3 cut(s)	171, 191, 405
GluI	GCNGC	2 cut(s)	321, 468
GsuI	CTGGAG	1 cut(s)	282
HaeIII	GGCC	1 cut(s)	239
HapII	CCGG	1 cut(s)	92
HinfI	GANTC	2 cut(s)	118, 392
HpaII	CCGG	1 cut(s)	92
HphI	GGTGA	1 cut(s)	485
Hpy188I	TCNGA	2 cut(s)	397, 412
Hpy188III	TCNNGA	3 cut(s)	191, 214, 405
Hpy99I	CGWCG	1 cut(s)	524
HpyAV	CCTTC	6 cut(s)	79, 127, 187, 229, 374, 454
HpyCH4IV	ACGT	1 cut(s)	209
HpyCH4V	TGCA	2 cut(s)	323, 359
HpyF10VI	GCNNNNNNNGC	3 cut(s)	173, 245, 299
HpyF3I	CTNAG	2 cut(s)	96, 411
HpySE526I	ACGT	1 cut(s)	209
Kzo9I	GATC	1 cut(s)	407
LmnI	GCTCC	2 cut(s)	172, 307
LpnPI	CCDG	5 cut(s)	69, 105, 246, 448, 456
Lsp1109I	GCAGC	1 cut(s)	307
LweI	GCATC	1 cut(s)	346
MaeI	CTAG	3 cut(s)	171, 191, 405
MaeII	ACGT	1 cut(s)	209
MaeIII	GTNAC	1 cut(s)	205
MalI	GATC	1 cut(s)	409
MboI	GATC	1 cut(s)	407
MflI	RGATCY	1 cut(s)	407
MhlI	GDGCHC	1 cut(s)	169
MlyI	GAGTC	1 cut(s)	112
MnlI	CCTC	6 cut(s)	75, 257, 370, 436, 487, 517
Mph1103I	ATGCAT	1 cut(s)	361
MseI	TTAA	1 cut(s)	30
MspI	CCGG	1 cut(s)	92
MwoI	GCNNNNNNNGC	3 cut(s)	173, 245, 299
NdeI	CATATG	1 cut(s)	307
NdeII	GATC	1 cut(s)	407
NlaIV	GGNNCC	2 cut(s)	90, 147
NmuCI	GTSAC	1 cut(s)	205
NsiI	ATGCAT	1 cut(s)	361
PaqCI	CACCTGC	1 cut(s)	461
PcsI	WCGNNNNNNNCGW	1 cut(s)	118
PfeI	GAWTC	1 cut(s)	392
PkrI	GCNGC	2 cut(s)	322, 469
PleI	GAGTC	1 cut(s)	112
PpsI	GAGTC	1 cut(s)	112
PpuMI	RGGWCCY	1 cut(s)	145
Psp124BI	GAGCTC	1 cut(s)	169
Psp5II	RGGWCCY	1 cut(s)	145
PspN4I	GGNNCC	2 cut(s)	90, 147
PspPI	GGNCC	1 cut(s)	145
PspPPI	RGGWCCY	1 cut(s)	145
PsuI	RGATCY	1 cut(s)	407
SacI	GAGCTC	1 cut(s)	169
SaqAI	TTAA	1 cut(s)	30
SatI	GCNGC	2 cut(s)	321, 468
Sau3AI	GATC	1 cut(s)	407
Sau96I	GGNCC	1 cut(s)	145
SchI	GAGTC	1 cut(s)	112
SduI	GDGCHC	1 cut(s)	169
SetI	ASST	9 cut(s)	75, 169, 212, 262, 295, 304, 322, 337, 475
SfaNI	GCATC	1 cut(s)	346
SinI	GGWCC	1 cut(s)	145
SmlI	CTYRAG	1 cut(s)	288
SmoI	CTYRAG	1 cut(s)	288
SsiI	CCGC	1 cut(s)	467
SspMI	CTAG	3 cut(s)	171, 191, 405
SstI	GAGCTC	1 cut(s)	169
TaiI	ACGT	1 cut(s)	212
TauI	GCSGC	1 cut(s)	470
TfiI	GAWTC	1 cut(s)	392
Tru1I	TTAA	1 cut(s)	30
Tru9I	TTAA	1 cut(s)	30
TscAI	CASTG	1 cut(s)	442
TseFI	GTSAC	1 cut(s)	205
TseI	GCWGC	1 cut(s)	320
Tsp45I	GTSAC	1 cut(s)	205
TspDTI	ATGAA	6 cut(s)	17, 324, 405, 438, 444, 495
TspRI	CASTG	1 cut(s)	442
VpaK11BI	GGWCC	1 cut(s)	145
XbaI	TCTAGA	2 cut(s)	190, 404
XspI	CTAG	3 cut(s)	171, 191, 405
Zsp2I	ATGCAT	1 cut(s)	361

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.