Prupe.2G249000_v2.0.a1

High mobility group B protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0001626
Physical Location & Seq
Forward (+)
26443996 .. 26447038
3043 bp
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UTR
Exon/CDS
Intron
Prupe.2G249000.2

Sequence Viewer

Length: 513 bp
ATGAAGGTTTCCAAGGGCAAAGGTCCTGTGAGGAAGGAGAAGAAAGAAGTCTTAAAGCCTGTAGTAGAGGACAGAAAGGTTGGAAAGCGAAAGGCAGCGATTGAGGCTGACAAGAGCCGCCGAAAACTTGCTAAGAATGCAAAATTGGGCAAGAAGGACCCTAACAAACCAAAGAGGCCTGCTAGTGCTTTCTTTGTTTTTCTAGAAGAGTTCAGAACGATTTACAAGCAAGAGCATCCGAATGTGAAAGCTGTGTCGGCTGTGGGGAAAGCTGGAGGAGAAAAGTGGAAATCTATGTCTCATGCGGAGAAAGCTCCATATGAAGCTAAAGCAGCGAAAAGGAAATCAGAGTATGAAAAGCTTATGAAAGCTTACAACAACAAAGAGGAGGACACGGATGATGAAGAAGAAGAAGTAGCTGAAAGGTCAAAACCCATTGTGAAGGATGATGAAGAAGAGGAGAGTGGAGAGGAAGACGATGAAGAAGAAGATGACGATGATGATGAAGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03410 ko04140 ko04217 map03410 map04140 map04217
Pfam Domains
Protein Families
HMG_box

Protein Analysis

171

Amino Acids

19.43

Weight (kDa)

5.57

Isoelectric Point (pI)

54.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 118, 305
AjuI GAANNNNNNNTTGG 2 cut(s) 128, 160
AluBI AGCT 7 cut(s) 251, 272, 314, 326, 361, 371, 419
AluI AGCT 7 cut(s) 251, 272, 314, 326, 361, 371, 419
Alw26I GTCTC 1 cut(s) 303
AoxI GGCC 1 cut(s) 176
ApeKI GCWGC 2 cut(s) 95, 332
AspS9I GGNCC 2 cut(s) 23, 157
AvaII GGWCC 2 cut(s) 23, 157
BbsI GAAGAC 1 cut(s) 480
BbvI GCAGC 2 cut(s) 107, 344
BcoDI GTCTC 1 cut(s) 303
BfaI CTAG 2 cut(s) 183, 203
BfmI CTRYAG 1 cut(s) 60
BisI GCNGC 3 cut(s) 96, 118, 333
BlsI GCNGC 3 cut(s) 97, 119, 334
Bme18I GGWCC 2 cut(s) 23, 157
BmgT120I GGNCC 2 cut(s) 23, 157
BmiI GGNNCC 1 cut(s) 159
BmsI GCATC 1 cut(s) 244
BpiI GAAGAC 1 cut(s) 480
BpmI CTGGAG 1 cut(s) 294
BsaJI CCNNGG 1 cut(s) 12
BseDI CCNNGG 1 cut(s) 12
BseGI GGATG 3 cut(s) 235, 403, 451
BseRI GAGGAG 3 cut(s) 291, 401, 473
BseXI GCAGC 2 cut(s) 107, 344
BshFI GGCC 1 cut(s) 178
BsmAI GTCTC 1 cut(s) 303
BsmI GAATGC 1 cut(s) 142
BsnI GGCC 1 cut(s) 178
BspACI CCGC 2 cut(s) 118, 305
BspANI GGCC 1 cut(s) 178
BspLI GGNNCC 1 cut(s) 159
BssECI CCNNGG 1 cut(s) 12
BssT1I CCWWGG 1 cut(s) 12
Bst6I CTCTTC 2 cut(s) 201, 450
BstC8I GCNNGC 1 cut(s) 180
BstDEI CTNAG 1 cut(s) 132
BstF5I GGATG 3 cut(s) 235, 403, 451
BstMAI GTCTC 1 cut(s) 303
BstMWI GCNNNNNNNGC 5 cut(s) 104, 137, 257, 311, 332
BstSFI CTRYAG 1 cut(s) 60
BstV1I GCAGC 2 cut(s) 107, 344
BstV2I GAAGAC 1 cut(s) 480
BsuRI GGCC 1 cut(s) 178
BtsCI GGATG 3 cut(s) 235, 403, 451
Cac8I GCNNGC 1 cut(s) 180
Cfr13I GGNCC 2 cut(s) 23, 157
CviAII CATG 1 cut(s) 302
DdeI CTNAG 1 cut(s) 132
Eam1104I CTCTTC 2 cut(s) 201, 450
EarI CTCTTC 2 cut(s) 201, 450
Eco130I CCWWGG 1 cut(s) 12
Eco147I AGGCCT 1 cut(s) 178
Eco47I GGWCC 2 cut(s) 23, 157
EcoO109I RGGNCCY 2 cut(s) 23, 157
EcoT14I CCWWGG 1 cut(s) 12
ErhI CCWWGG 1 cut(s) 12
FaeI CATG 1 cut(s) 305
FaiI YATR 6 cut(s) 296, 303, 319, 321, 354, 365
FatI CATG 1 cut(s) 301
FauNDI CATATG 1 cut(s) 319
Fnu4HI GCNGC 3 cut(s) 96, 118, 333
FokI GGATG 3 cut(s) 222, 410, 458
Fsp4HI GCNGC 3 cut(s) 96, 118, 333
FspBI CTAG 2 cut(s) 183, 203
GluI GCNGC 3 cut(s) 96, 118, 333
GsuI CTGGAG 1 cut(s) 294
HaeIII GGCC 1 cut(s) 178
Hin1II CATG 1 cut(s) 305
HindIII AAGCTT 2 cut(s) 359, 369
Hpy188I TCNGA 3 cut(s) 215, 240, 349
Hpy188III TCNNGA 1 cut(s) 203
HpyAV CCTTC 3 cut(s) 28, 148, 436
HpyCH4V TGCA 1 cut(s) 140
HpyF10VI GCNNNNNNNGC 5 cut(s) 104, 137, 257, 311, 332
HpyF3I CTNAG 1 cut(s) 132
Hsp92II CATG 1 cut(s) 305
LmnI GCTCC 1 cut(s) 319
LpnPI CCDG 4 cut(s) 39, 72, 192, 258
Lsp1109I GCAGC 2 cut(s) 107, 344
LweI GCATC 1 cut(s) 244
MaeI CTAG 2 cut(s) 183, 203
MluCI AATT 1 cut(s) 143
MmeI TCCRAC 1 cut(s) 61
MnlI CCTC 9 cut(s) 24, 61, 97, 168, 269, 379, 382, 451, 463
MseI TTAA 1 cut(s) 53
MslI CAYNNNNRTG 1 cut(s) 240
Mva1269I GAATGC 1 cut(s) 142
MwoI GCNNNNNNNGC 5 cut(s) 104, 137, 257, 311, 332
NdeI CATATG 1 cut(s) 319
NlaIII CATG 1 cut(s) 305
NlaIV GGNNCC 1 cut(s) 159
PceI AGGCCT 1 cut(s) 178
PctI GAATGC 1 cut(s) 142
PkrI GCNGC 3 cut(s) 97, 119, 334
PpuMI RGGWCCY 2 cut(s) 23, 157
Psp5II RGGWCCY 2 cut(s) 23, 157
PspN4I GGNNCC 1 cut(s) 159
PspPI GGNCC 2 cut(s) 23, 157
PspPPI RGGWCCY 2 cut(s) 23, 157
RseI CAYNNNNRTG 1 cut(s) 240
SaqAI TTAA 1 cut(s) 53
SatI GCNGC 3 cut(s) 96, 118, 333
Sau96I GGNCC 2 cut(s) 23, 157
SfaNI GCATC 1 cut(s) 244
SfcI CTRYAG 1 cut(s) 60
SinI GGWCC 2 cut(s) 23, 157
SmiMI CAYNNNNRTG 1 cut(s) 240
Sse9I AATT 1 cut(s) 143
SseBI AGGCCT 1 cut(s) 178
SsiI CCGC 2 cut(s) 118, 305
SspMI CTAG 2 cut(s) 183, 203
StuI AGGCCT 1 cut(s) 178
StyI CCWWGG 1 cut(s) 12
TasI AATT 1 cut(s) 143
TauI GCSGC 1 cut(s) 120
Tru1I TTAA 1 cut(s) 53
Tru9I TTAA 1 cut(s) 53
TseI GCWGC 2 cut(s) 95, 332
TspDTI ATGAA 7 cut(s) 17, 336, 369, 380, 417, 465, 495
TspGWI ACGGA 1 cut(s) 410
VpaK11BI GGWCC 2 cut(s) 23, 157
XbaI TCTAGA 1 cut(s) 202
XspI CTAG 2 cut(s) 183, 203
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.