Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0001626

Physical Location & Seq

Genomic Coordinates Reverse (-)

6924704 .. 6927730

Gene Structure 3027 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g11530.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

ATGAGACCTGCCAAGGCTAAGGGGGGAGCAAGAGCCCTGAAACCTGTCGACGATGGGAGAGTTGGTAAACGAAAGGCTGCTGCTCCAGTTGATAAGGGTGGCAAAGGAAAGGCCAAGCAGACGAAGAAGGCCAAGAAAGACCCCAACAAGCCTAAGAAGCCACCTAGTGCCTTTTTTGTGTTCCTTGCTGAGTTCAGGGTAGATTTCAAGAAAAAGAACCCCAATGTGAAAGGGGTAGCAGCTGTTGGAAAAGCTGGAGGAGAGAAGTGGAGATCTATGACTGATGCTGAAAAAGCTCCTTATGAAGCTCAGTCTGCAAAAGCAAAGACCGAGTATGAAAAACAGATGAAAATCTATGACAAAAAGCAGAGTGCACCTGATGATGGTGATGAAGAGTCAGAGAGGTCAAGATCTGAAGTGCATGATGAAGACGATGAAGCTAGTGGGGAGGAGGCGCAGCCGAAAGCGGAGGAAGCAGAGGAGGAAGAGGTGGATGACGAGGATGAAGGGGAGGATGAAGGTGAAGATGAGGAAGATGATGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000785 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003700 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006325 GO:0006333 GO:0006355 GO:0006996 GO:0008150 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0030527 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051276 GO:0060255 GO:0065007 GO:0071840 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03410 ko04140 ko04217 map03410 map04140 map04217

Pfam Domains

Protein Families

HMG_box

Protein Analysis

182

Amino Acids

19.9

Weight (kDa)

4.95

Isoelectric Point (pI)

49.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HMG_box_2	PF09011	48 - 120	1e-13	HMG-box domain
HMG_box	PF00505	51 - 119	3.9e-21	HMG (high mobility group) box
HMG_WDHD1	PF24815	54 - 102	5.9e-11	WDHD1 HMG box

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001626)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51880 AT3G51880 AT3G51880 AT3G51880 AT3G51880
fragaria_vesca	FvH4_6g11530 FvH4_6g11530 FvH4_6g11530 FvH4_6g11530 FvH4_7g24360 FvH4_7g24360 FvH4_7g24360
malus_domestica	MD01G1132900.v1.1 MD07G1220600.v1.1
prunus_persica	Prupe.2G249000_v2.0.a1 Prupe.2G249000_v2.0.a1 Prupe.6G276300_v2.0.a1 Prupe.6G276300_v2.0.a1 Prupe.6G276300_v2.0.a1 Prupe.6G276300_v2.0.a1
pyrus_communis	pycom01g16950 pycom07g19960
rosa_chinensis	RchiOBHm_Chr1g0370021 RchiOBHm_Chr3g0463231
rosa_laevigata	RLG00000024799
rosa_multiflora	Rmu_co8427781.1_g000001 Rmu_sc0005056.1_g000014 Rmu_sc0008079.1_g000019 Rmu_sc0022743.1_g000005 Rmu_sc0022743.1_g000006
rosa_roxburghii	Rroxscaffold_4G00286860 Rroxscaffold_4G00287170 Rroxscaffold_6G00416770
rosa_rugosa	Rorug01G0353500 Rorug03G0062700 Rorug03G0062700 Rorug03G0062700 Rorug03G0062800 Rorug03G0062800
rosa_samantha	Rh1AG362200 Rh1BG325400 Rh1CG338700 Rh1DG355900 Rh3AG120800 Rh3BG125300 Rh3CG127300 Rh3DG126500
rosa_wichuraiana	Rw1G031870 Rw3G010260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	16
AccI	GTMKAC	1 cut(s)	48
AciI	CCGC	1 cut(s)	467
AcuI	CTGAAG	1 cut(s)	435
AdeI	CACNNNGTG	1 cut(s)	167
AfiI	CCNNNNNNNGG	1 cut(s)	383
AgsI	TTSAA	1 cut(s)	208
AluBI	AGCT	5 cut(s)	242, 254, 296, 308, 440
AluI	AGCT	5 cut(s)	242, 254, 296, 308, 440
Alw21I	GWGCWC	1 cut(s)	376
Alw44I	GTGCAC	1 cut(s)	372
AoxI	GGCC	2 cut(s)	111, 129
ApaLI	GTGCAC	1 cut(s)	372
ApeKI	GCWGC	4 cut(s)	77, 80, 239, 457
AspLEI	GCGC	1 cut(s)	457
AsuHPI	GGTGA	2 cut(s)	398, 533
BaeGI	GKGCMC	1 cut(s)	376
BanII	GRGCYC	1 cut(s)	37
BbsI	GAAGAC	1 cut(s)	435
Bbv12I	GWGCWC	1 cut(s)	376
BbvI	GCAGC	4 cut(s)	64, 67, 251, 469
BccI	CCATC	2 cut(s)	47, 377
BfaI	CTAG	2 cut(s)	165, 441
BfuAI	ACCTGC	1 cut(s)	16
BglII	AGATCT	2 cut(s)	272, 410
BisI	GCNGC	4 cut(s)	78, 81, 240, 458
BlsI	GCNGC	4 cut(s)	79, 82, 241, 459
BmsI	GCATC	1 cut(s)	274
BpiI	GAAGAC	1 cut(s)	435
BpmI	CTGGAG	2 cut(s)	69, 276
Bpu10I	CCTNAGC	1 cut(s)	18
BsaBI	GATNNNNATC	1 cut(s)	350
BsaJI	CCNNGG	1 cut(s)	12
BsaXI	ACNNNNNCTCC	2 cut(s)	49, 79
Bsc4I	CCNNNNNNNGG	1 cut(s)	383
Bse1I	ACTGG	1 cut(s)	86
Bse8I	GATNNNNATC	1 cut(s)	350
BseDI	CCNNGG	1 cut(s)	12
BseGI	GGATG	3 cut(s)	499, 508, 520
BseJI	GATNNNNATC	1 cut(s)	350
BseLI	CCNNNNNNNGG	1 cut(s)	383
BseMII	CTCAG	2 cut(s)	180, 323
BseNI	ACTGG	1 cut(s)	86
BseRI	GAGGAG	3 cut(s)	273, 464, 494
BseSI	GKGCMC	1 cut(s)	376
BseXI	GCAGC	4 cut(s)	64, 67, 251, 469
BshFI	GGCC	2 cut(s)	113, 131
BsiHKAI	GWGCWC	1 cut(s)	376
BslI	CCNNNNNNNGG	1 cut(s)	383
BsnI	GGCC	2 cut(s)	113, 131
Bsp1286I	GDGCHC	2 cut(s)	37, 376
Bsp143I	GATC	2 cut(s)	272, 410
BspACI	CCGC	1 cut(s)	467
BspANI	GGCC	2 cut(s)	113, 131
BspCNI	CTCAG	2 cut(s)	181, 322
BspMI	ACCTGC	1 cut(s)	16
BsrI	ACTGG	1 cut(s)	86
BssECI	CCNNGG	1 cut(s)	12
BssMI	GATC	2 cut(s)	272, 410
BssT1I	CCWWGG	1 cut(s)	12
Bst6I	CTCTTC	2 cut(s)	387, 480
BstDEI	CTNAG	4 cut(s)	18, 153, 189, 309
BstF5I	GGATG	3 cut(s)	499, 508, 520
BstHHI	GCGC	1 cut(s)	457
BstKTI	GATC	2 cut(s)	275, 413
BstMBI	GATC	2 cut(s)	272, 410
BstMWI	GCNNNNNNNGC	4 cut(s)	157, 293, 314, 473
BstSLI	GKGCMC	1 cut(s)	376
BstV1I	GCAGC	4 cut(s)	64, 67, 251, 469
BstV2I	GAAGAC	1 cut(s)	435
BstX2I	RGATCY	2 cut(s)	272, 410
BstYI	RGATCY	2 cut(s)	272, 410
BsuRI	GGCC	2 cut(s)	113, 131
BtsCI	GGATG	3 cut(s)	499, 508, 520
BveI	ACCTGC	1 cut(s)	16
CfoI	GCGC	1 cut(s)	457
CviAII	CATG	1 cut(s)	422
DdeI	CTNAG	4 cut(s)	18, 153, 189, 309
DpnI	GATC	2 cut(s)	274, 412
DpnII	GATC	2 cut(s)	272, 410
DraIII	CACNNNGTG	1 cut(s)	167
Eam1104I	CTCTTC	2 cut(s)	387, 480
EarI	CTCTTC	2 cut(s)	387, 480
Eco130I	CCWWGG	1 cut(s)	12
Eco24I	GRGCYC	1 cut(s)	37
Eco57I	CTGAAG	1 cut(s)	435
EcoT14I	CCWWGG	1 cut(s)	12
EcoT38I	GRGCYC	1 cut(s)	37
ErhI	CCWWGG	1 cut(s)	12
FaeI	CATG	1 cut(s)	425
FaiI	YATR	5 cut(s)	278, 303, 336, 357, 423
FatI	CATG	1 cut(s)	421
FblI	GTMKAC	1 cut(s)	48
Fnu4HI	GCNGC	4 cut(s)	78, 81, 240, 458
FokI	GGATG	3 cut(s)	506, 515, 527
FriOI	GRGCYC	1 cut(s)	37
Fsp4HI	GCNGC	4 cut(s)	78, 81, 240, 458
FspBI	CTAG	2 cut(s)	165, 441
GlaI	GCGC	1 cut(s)	456
GluI	GCNGC	4 cut(s)	78, 81, 240, 458
GsuI	CTGGAG	2 cut(s)	69, 276
HaeIII	GGCC	2 cut(s)	113, 131
HhaI	GCGC	1 cut(s)	457
Hin1II	CATG	1 cut(s)	425
Hin6I	GCGC	1 cut(s)	455
HinP1I	GCGC	1 cut(s)	455
HincII	GTYRAC	1 cut(s)	49
HindII	GTYRAC	1 cut(s)	49
HinfI	GANTC	1 cut(s)	395
HphI	GGTGA	2 cut(s)	398, 533
Hpy166II	GTNNAC	3 cut(s)	49, 68, 374
Hpy188I	TCNGA	2 cut(s)	400, 415
Hpy188III	TCNNGA	2 cut(s)	208, 408
Hpy8I	GTNNAC	3 cut(s)	49, 68, 374
Hpy99I	CGWCG	1 cut(s)	53
HpyAV	CCTTC	3 cut(s)	121, 500, 512
HpyCH4V	TGCA	3 cut(s)	317, 374, 421
HpyF10VI	GCNNNNNNNGC	4 cut(s)	157, 293, 314, 473
HpyF3I	CTNAG	4 cut(s)	18, 153, 189, 309
Hsp92II	CATG	1 cut(s)	425
HspAI	GCGC	1 cut(s)	455
Kzo9I	GATC	2 cut(s)	272, 410
LmnI	GCTCC	3 cut(s)	26, 88, 301
LpnPI	CCDG	7 cut(s)	21, 50, 57, 99, 181, 240, 390
Lsp1109I	GCAGC	4 cut(s)	64, 67, 251, 469
LweI	GCATC	1 cut(s)	274
MaeI	CTAG	2 cut(s)	165, 441
MalI	GATC	2 cut(s)	274, 412
MboI	GATC	2 cut(s)	272, 410
MboII	GAAGA	6 cut(s)	136, 404, 440, 497, 536, 545
MflI	RGATCY	2 cut(s)	272, 410
MhlI	GDGCHC	2 cut(s)	37, 376
MlyI	GAGTC	1 cut(s)	404
MmeI	TCCRAC	1 cut(s)	226
MspA1I	CMGCKG	1 cut(s)	242
MwoI	GCNNNNNNNGC	4 cut(s)	157, 293, 314, 473
NdeII	GATC	2 cut(s)	272, 410
NlaIII	CATG	1 cut(s)	425
PkrI	GCNGC	4 cut(s)	79, 82, 241, 459
PleI	GAGTC	1 cut(s)	403
PpsI	GAGTC	1 cut(s)	403
PsuI	RGATCY	2 cut(s)	272, 410
PvuII	CAGCTG	1 cut(s)	242
SalI	GTCGAC	1 cut(s)	47
SatI	GCNGC	4 cut(s)	78, 81, 240, 458
Sau3AI	GATC	2 cut(s)	272, 410
SchI	GAGTC	1 cut(s)	404
SduI	GDGCHC	2 cut(s)	37, 376
SfaNI	GCATC	1 cut(s)	274
SsiI	CCGC	1 cut(s)	467
SspMI	CTAG	2 cut(s)	165, 441
StyI	CCWWGG	1 cut(s)	12
TaqI	TCGA	1 cut(s)	48
TaqII	GACCGA	1 cut(s)	344
TseI	GCWGC	4 cut(s)	77, 80, 239, 457
TspDTI	ATGAA	8 cut(s)	318, 351, 362, 405, 441, 450, 519, 531
VneI	GTGCAC	1 cut(s)	372
XmiI	GTMKAC	1 cut(s)	48
XspI	CTAG	2 cut(s)	165, 441

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.