Rorug01G0353500

High mobility group B protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0001626
Physical Location & Seq
Reverse (-)
47054219 .. 47055016
798 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0353500.1

Sequence Viewer

Length: 564 bp
ATGGCGAGCCTATCACCTTCTTCATCTCCGCGACTCCCAAACCCATTCCCACTCTCATCACCACCCAAAACCCACAACCCCAAACCCCTCCTTTCCTTCCCCACCCGAGCCACCGACCCGGAAACACCCCCATCCGACCCGGCCCCAGAACCCGGCTCCGACTTCGACGACCGTCTCAGCCAGGTCCGGCTCCGCTACCGCAGCGGCACCGGCAAGAAAGCCGAGGCCCGGAAGACCAAGAAGTCCAAGTCCTCCGGGTCCGGGTCGTCCGGGTCCAACGTCTTCCTCCCGCCGGTGCCGCTCAAGGAACCCGTGTCGGGCGGGTTGAAGGTGGACTTCGGGTTCAGCCCGTATAGCGAGCGGGTCAACGGGCGGGTCGCGCTTCTGGGTTTGGCGGCGTTGCTGCTGGTGGAGCTGGCGACGGGGAAGAGCGTGCTGAAATTTCATACGCCGCCGGTGGTGCTCATTCAGGTTTACTTTGTGGCGGCGGCGACGGCGGTTTATATTAAGTATGAGAAAGAGAAGGTCAGTGTTTGGCCTCAGTCTCCACCACTCAAAGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03410 ko04140 ko04217 map03410 map04140 map04217
Pfam Domains
Protein Families
HMG_box

Protein Analysis

187

Amino Acids

20.05

Weight (kDa)

9.87

Isoelectric Point (pI)

48.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 241
AccB1I GGYRCC 2 cut(s) 206, 295
AccBSI CCGCTC 2 cut(s) 301, 361
AccII CGCG 2 cut(s) 31, 380
AcsI RAATTY 1 cut(s) 440
AfiI CCNNNNNNNGG 5 cut(s) 152, 228, 261, 292, 317
AgsI TTSAA 1 cut(s) 328
AjnI CCWGG 1 cut(s) 180
AloI GAACNNNNNNTCC 2 cut(s) 326, 358
AluBI AGCT 1 cut(s) 415
AluI AGCT 1 cut(s) 415
Alw21I GWGCWC 1 cut(s) 465
Alw26I GTCTC 2 cut(s) 179, 549
Ama87I CYCGRG 1 cut(s) 105
AoxI GGCC 3 cut(s) 141, 225, 536
ApeKI GCWGC 2 cut(s) 201, 403
ApoI RAATTY 1 cut(s) 440
AspLEI GCGC 1 cut(s) 382
AspS9I GGNCC 5 cut(s) 142, 184, 226, 258, 273
AsuC2I CCSGG 7 cut(s) 119, 140, 153, 229, 256, 262, 271
AsuHPI GGTGA 2 cut(s) 6, 51
AvaI CYCGRG 1 cut(s) 105
AvaII GGWCC 3 cut(s) 184, 258, 273
BanI GGYRCC 2 cut(s) 206, 295
BbsI GAAGAC 2 cut(s) 239, 274
Bbv12I GWGCWC 1 cut(s) 465
BbvI GCAGC 2 cut(s) 213, 390
BccI CCATC 1 cut(s) 139
BceAI ACGGC 1 cut(s) 510
BciT130I CCWGG 1 cut(s) 182
BcnI CCSGG 7 cut(s) 119, 140, 153, 229, 256, 262, 271
BcoDI GTCTC 2 cut(s) 179, 549
BisI GCNGC 8 cut(s) 202, 205, 299, 396, 404, 452, 486, 489
BlsI GCNGC 8 cut(s) 203, 206, 300, 397, 405, 453, 487, 490
Bme1390I CCNGG 8 cut(s) 119, 140, 153, 182, 229, 256, 262, 271
Bme18I GGWCC 3 cut(s) 184, 258, 273
BmeT110I CYCGRG 1 cut(s) 105
BmgT120I GGNCC 5 cut(s) 142, 184, 226, 258, 273
BmiI GGNNCC 8 cut(s) 144, 157, 191, 208, 259, 274, 297, 309
BmrFI CCNGG 8 cut(s) 119, 140, 153, 182, 229, 256, 262, 271
BoxI GACNNNNGTC 1 cut(s) 171
BpiI GAAGAC 2 cut(s) 239, 274
BpuEI CTTGAG 1 cut(s) 287
BpuMI CCSGG 7 cut(s) 119, 140, 153, 229, 256, 262, 271
BsaJI CCNNGG 1 cut(s) 222
Bsc4I CCNNNNNNNGG 5 cut(s) 152, 228, 261, 292, 317
Bse118I RCCGGY 3 cut(s) 209, 292, 454
BseBI CCWGG 1 cut(s) 182
BseDI CCNNGG 1 cut(s) 222
BseGI GGATG 1 cut(s) 131
BseLI CCNNNNNNNGG 5 cut(s) 152, 228, 261, 292, 317
BseMII CTCAG 2 cut(s) 190, 554
BseXI GCAGC 2 cut(s) 213, 390
Bsh1236I CGCG 2 cut(s) 31, 380
Bsh1285I CGRYCG 1 cut(s) 172
BshFI GGCC 3 cut(s) 143, 227, 538
BshNI GGYRCC 2 cut(s) 206, 295
BsiEI CGRYCG 1 cut(s) 172
BsiHKAI GWGCWC 1 cut(s) 465
BsiHKCI CYCGRG 1 cut(s) 105
BslI CCNNNNNNNGG 5 cut(s) 152, 228, 261, 292, 317
BsmAI GTCTC 2 cut(s) 179, 549
BsmBI CGTCTC 1 cut(s) 179
BsnI GGCC 3 cut(s) 143, 227, 538
BsoBI CYCGRG 1 cut(s) 105
Bsp1286I GDGCHC 1 cut(s) 465
BspANI GGCC 3 cut(s) 143, 227, 538
BspCNI CTCAG 2 cut(s) 189, 553
BspFNI CGCG 2 cut(s) 31, 380
BspLI GGNNCC 8 cut(s) 144, 157, 191, 208, 259, 274, 297, 309
BspQI GCTCTTC 1 cut(s) 422
BspT107I GGYRCC 2 cut(s) 206, 295
BsrBI CCGCTC 2 cut(s) 301, 361
BsrFI RCCGGY 3 cut(s) 209, 292, 454
BssAI RCCGGY 3 cut(s) 209, 292, 454
BssECI CCNNGG 1 cut(s) 222
Bst2UI CCWGG 1 cut(s) 182
Bst4CI ACNGT 1 cut(s) 173
Bst6I CTCTTC 1 cut(s) 422
BstC8I GCNNGC 4 cut(s) 7, 359, 417, 434
BstDEI CTNAG 2 cut(s) 176, 540
BstF5I GGATG 1 cut(s) 131
BstFNI CGCG 2 cut(s) 31, 380
BstHHI GCGC 1 cut(s) 382
BstMAI GTCTC 2 cut(s) 179, 549
BstMCI CGRYCG 1 cut(s) 172
BstMWI GCNNNNNNNGC 8 cut(s) 201, 210, 298, 354, 379, 412, 460, 494
BstNI CCWGG 1 cut(s) 182
BstPAI GACNNNNGTC 1 cut(s) 171
BstSCI CCNGG 8 cut(s) 117, 138, 151, 180, 227, 254, 260, 269
BstUI CGCG 2 cut(s) 31, 380
BstV1I GCAGC 2 cut(s) 213, 390
BstV2I GAAGAC 2 cut(s) 239, 274
BsuRI GGCC 3 cut(s) 143, 227, 538
BtsCI GGATG 1 cut(s) 131
BtsIMutI CAGTG 1 cut(s) 535
Cac8I GCNNGC 4 cut(s) 7, 359, 417, 434
CfoI GCGC 1 cut(s) 382
Cfr10I RCCGGY 3 cut(s) 209, 292, 454
Cfr13I GGNCC 5 cut(s) 142, 184, 226, 258, 273
DdeI CTNAG 2 cut(s) 176, 540
DrdI GACNNNNNNGTC 1 cut(s) 241
DseDI GACNNNNNNGTC 1 cut(s) 241
Eam1104I CTCTTC 1 cut(s) 422
EarI CTCTTC 1 cut(s) 422
Eco47I GGWCC 3 cut(s) 184, 258, 273
Eco88I CYCGRG 1 cut(s) 105
EcoRII CCWGG 1 cut(s) 180
Esp3I CGTCTC 1 cut(s) 179
FaiI YATR 4 cut(s) 354, 447, 504, 513
FalI AAGNNNNNCTT 2 cut(s) 320, 352
FauI CCCGC 4 cut(s) 297, 314, 354, 366
Fnu4HI GCNGC 8 cut(s) 202, 205, 299, 396, 404, 452, 486, 489
FokI GGATG 1 cut(s) 118
Fsp4HI GCNGC 8 cut(s) 202, 205, 299, 396, 404, 452, 486, 489
GlaI GCGC 1 cut(s) 381
GluI GCNGC 8 cut(s) 202, 205, 299, 396, 404, 452, 486, 489
HaeIII GGCC 3 cut(s) 143, 227, 538
HhaI GCGC 1 cut(s) 382
Hin6I GCGC 1 cut(s) 380
HinP1I GCGC 1 cut(s) 380
HincII GTYRAC 1 cut(s) 367
HindII GTYRAC 1 cut(s) 367
HinfI GANTC 1 cut(s) 33
HphI GGTGA 2 cut(s) 6, 51
Hpy166II GTNNAC 3 cut(s) 334, 367, 475
Hpy188I TCNGA 2 cut(s) 136, 160
Hpy8I GTNNAC 3 cut(s) 334, 367, 475
Hpy99I CGWCG 3 cut(s) 170, 424, 496
HpyAV CCTTC 4 cut(s) 27, 106, 322, 517
HpyCH4III ACNGT 1 cut(s) 173
HpyCH4IV ACGT 1 cut(s) 279
HpyF10VI GCNNNNNNNGC 8 cut(s) 201, 210, 298, 354, 379, 412, 460, 494
HpyF3I CTNAG 2 cut(s) 176, 540
HpySE526I ACGT 1 cut(s) 279
HspAI GCGC 1 cut(s) 380
LguI GCTCTTC 1 cut(s) 422
LmnI GCTCC 3 cut(s) 161, 195, 412
Lsp1109I GCAGC 2 cut(s) 213, 390
MaeII ACGT 1 cut(s) 279
MbiI CCGCTC 2 cut(s) 301, 361
MboII GAAGA 4 cut(s) 12, 244, 274, 439
MhlI GDGCHC 1 cut(s) 465
MluCI AATT 1 cut(s) 440
MlyI GAGTC 1 cut(s) 27
MmeI TCCRAC 3 cut(s) 159, 183, 300
MnlI CCTC 5 cut(s) 98, 217, 262, 296, 549
MseI TTAA 1 cut(s) 507
MspA1I CMGCKG 1 cut(s) 204
MspR9I CCNGG 8 cut(s) 119, 140, 153, 182, 229, 256, 262, 271
MvaI CCWGG 1 cut(s) 182
MvnI CGCG 2 cut(s) 31, 380
MwoI GCNNNNNNNGC 8 cut(s) 201, 210, 298, 354, 379, 412, 460, 494
NciI CCSGG 7 cut(s) 119, 140, 153, 229, 256, 262, 271
NlaIV GGNNCC 8 cut(s) 144, 157, 191, 208, 259, 274, 297, 309
NmeAIII GCCGAG 1 cut(s) 247
PciSI GCTCTTC 1 cut(s) 422
PkrI GCNGC 8 cut(s) 203, 206, 300, 397, 405, 453, 487, 490
PleI GAGTC 1 cut(s) 27
PpsI GAGTC 1 cut(s) 27
PshAI GACNNNNGTC 1 cut(s) 171
Psp6I CCWGG 1 cut(s) 180
PspGI CCWGG 1 cut(s) 180
PspN4I GGNNCC 8 cut(s) 144, 157, 191, 208, 259, 274, 297, 309
PspPI GGNCC 5 cut(s) 142, 184, 226, 258, 273
SapI GCTCTTC 1 cut(s) 422
SaqAI TTAA 1 cut(s) 507
SatI GCNGC 8 cut(s) 202, 205, 299, 396, 404, 452, 486, 489
Sau96I GGNCC 5 cut(s) 142, 184, 226, 258, 273
SchI GAGTC 1 cut(s) 27
ScrFI CCNGG 8 cut(s) 119, 140, 153, 182, 229, 256, 262, 271
SduI GDGCHC 1 cut(s) 465
SetI ASST 7 cut(s) 19, 186, 282, 333, 417, 474, 528
SgrAI CRCCGGYG 2 cut(s) 292, 454
SinI GGWCC 3 cut(s) 184, 258, 273
SmlI CTYRAG 1 cut(s) 302
SmoI CTYRAG 1 cut(s) 302
Sse9I AATT 1 cut(s) 440
StyD4I CCNGG 8 cut(s) 117, 138, 151, 180, 227, 254, 260, 269
TaaI ACNGT 1 cut(s) 173
TaiI ACGT 1 cut(s) 282
TaqI TCGA 1 cut(s) 165
TasI AATT 1 cut(s) 440
TauI GCSGC 6 cut(s) 207, 301, 398, 454, 488, 491
Tru1I TTAA 1 cut(s) 507
Tru9I TTAA 1 cut(s) 507
TscAI CASTG 1 cut(s) 535
TseI GCWGC 2 cut(s) 201, 403
TspDTI ATGAA 2 cut(s) 12, 434
TspRI CASTG 1 cut(s) 535
VpaK11BI GGWCC 3 cut(s) 184, 258, 273
XapI RAATTY 1 cut(s) 440
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.