Rh1AG362200

High mobility group B protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0001626
Physical Location & Seq
Forward (+)
59683907 .. 59701097
17191 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG362200.1

Sequence Viewer

Length: 507 bp
ATGAAGGCTGCCAAAGGCAAAGGAACTGTGAAGAAGGACAAGAAAGAAGTATTGAAGCCTGTTGACGACAGAAAGGTTGGAAAGCGAAAGGCAGTGGCTGAGGTTAACAAGAGCAGCGGAAAATTGGCCAAGAACTCAAAATCGGCCAAAAAGGACCCTAACAAACCAAAGAAGCCTGCTAGTGCTTTTTTTGTTTTTCTTGAAGAGTTCAGAATAACTTACAAGCAAGAGCACCCGAATGTGAAAGCTGTGTCAGCTGTGGGGAAAGCTGGCGGAGCAAAGTGGAAATCTATGTCTGCTGCAGAGAAAGCTCCATATGAAGCTAAAGCAGCTAAAAGGAAAACGGAGTATGAAAAACTTATGAATGCCTACAACACTAAACAGGAGGATACGGATGGTGATGATGATGAAGAACCTGAAAAACCAAAAGCCAGCGTGACCCATGAAGATGAGGAGAGTGGGGAGAATTTTGCATTAGTGTATCGATCCGAGAAATATGAAGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03410 ko04140 ko04217 map03410 map04140 map04217
Pfam Domains
Protein Families
HMG_box

Protein Analysis

168

Amino Acids

18.72

Weight (kDa)

9.4

Isoelectric Point (pI)

29.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HMG_box_2 PF09011 53 - 125 1.8e-12 HMG-box domain
HMG_box PF00505 56 - 125 9.1e-21 HMG (high mobility group) box
HMG_WDHD1 PF24815 59 - 109 4.4e-10 WDHD1 HMG box
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 117, 273
AclWI GGATC 1 cut(s) 480
AcoI YGGCCR 2 cut(s) 126, 144
AcsI RAATTY 1 cut(s) 466
AgsI TTSAA 2 cut(s) 55, 203
AluBI AGCT 6 cut(s) 248, 257, 269, 311, 323, 332
AluI AGCT 6 cut(s) 248, 257, 269, 311, 323, 332
Alw21I GWGCWC 1 cut(s) 234
AlwI GGATC 1 cut(s) 480
AlwNI CAGNNNCTG 1 cut(s) 98
AoxI GGCC 2 cut(s) 126, 144
ApeKI GCWGC 4 cut(s) 8, 114, 299, 329
ApoI RAATTY 1 cut(s) 466
AspS9I GGNCC 1 cut(s) 154
AsuHPI GGTGA 1 cut(s) 410
AvaII GGWCC 1 cut(s) 154
BalI TGGCCA 1 cut(s) 128
Bbv12I GWGCWC 1 cut(s) 234
BbvCI CCTCAGC 1 cut(s) 99
BbvI GCAGC 3 cut(s) 126, 286, 341
BccI CCATC 1 cut(s) 389
BciVI GTATCC 1 cut(s) 382
BfaI CTAG 1 cut(s) 180
BfmI CTRYAG 1 cut(s) 300
BfuI GTATCC 1 cut(s) 382
BisI GCNGC 4 cut(s) 9, 115, 300, 330
BlsI GCNGC 4 cut(s) 10, 116, 301, 331
Bme18I GGWCC 1 cut(s) 154
BmgT120I GGNCC 1 cut(s) 154
BmiI GGNNCC 1 cut(s) 156
Bpu10I CCTNAGC 1 cut(s) 99
Bsa29I ATCGAT 1 cut(s) 484
BseCI ATCGAT 1 cut(s) 484
BseGI GGATG 1 cut(s) 400
BseMII CTCAG 1 cut(s) 90
BseRI GAGGAG 1 cut(s) 467
BseXI GCAGC 3 cut(s) 126, 286, 341
BshFI GGCC 2 cut(s) 128, 146
BshVI ATCGAT 1 cut(s) 484
BsiHKAI GWGCWC 1 cut(s) 234
BsmI GAATGC 1 cut(s) 370
BsnI GGCC 2 cut(s) 128, 146
Bsp1286I GDGCHC 1 cut(s) 234
Bsp143I GATC 1 cut(s) 485
BspACI CCGC 2 cut(s) 117, 273
BspANI GGCC 2 cut(s) 128, 146
BspCNI CTCAG 1 cut(s) 91
BspDI ATCGAT 1 cut(s) 484
BspLI GGNNCC 1 cut(s) 156
BspMAI CTGCAG 1 cut(s) 304
BspPI GGATC 1 cut(s) 480
BssMI GATC 1 cut(s) 485
Bst4CI ACNGT 1 cut(s) 28
Bst6I CTCTTC 1 cut(s) 198
BstC8I GCNNGC 3 cut(s) 177, 271, 433
BstDEI CTNAG 1 cut(s) 99
BstF5I GGATG 1 cut(s) 400
BstKTI GATC 1 cut(s) 488
BstMBI GATC 1 cut(s) 485
BstMWI GCNNNNNNNGC 4 cut(s) 254, 275, 308, 329
BstSFI CTRYAG 1 cut(s) 300
BstV1I GCAGC 3 cut(s) 126, 286, 341
Bsu15I ATCGAT 1 cut(s) 484
BsuI GTATCC 1 cut(s) 382
BsuRI GGCC 2 cut(s) 128, 146
BsuTUI ATCGAT 1 cut(s) 484
BtsCI GGATG 1 cut(s) 400
BtsI GCAGTG 1 cut(s) 99
BtsIMutI CAGTG 1 cut(s) 99
Cac8I GCNNGC 3 cut(s) 177, 271, 433
CaiI CAGNNNCTG 1 cut(s) 98
Cfr13I GGNCC 1 cut(s) 154
ClaI ATCGAT 1 cut(s) 484
CviAII CATG 1 cut(s) 443
DdeI CTNAG 1 cut(s) 99
DpnI GATC 1 cut(s) 487
DpnII GATC 1 cut(s) 485
EaeI YGGCCR 2 cut(s) 126, 144
Eam1104I CTCTTC 1 cut(s) 198
EarI CTCTTC 1 cut(s) 198
EciI GGCGGA 1 cut(s) 288
Eco47I GGWCC 1 cut(s) 154
EcoO109I RGGNCCY 1 cut(s) 154
FaeI CATG 1 cut(s) 446
FaiI YATR 7 cut(s) 293, 316, 318, 351, 362, 444, 498
FatI CATG 1 cut(s) 442
FauNDI CATATG 1 cut(s) 316
Fnu4HI GCNGC 4 cut(s) 9, 115, 300, 330
FokI GGATG 1 cut(s) 407
Fsp4HI GCNGC 4 cut(s) 9, 115, 300, 330
FspBI CTAG 1 cut(s) 180
GluI GCNGC 4 cut(s) 9, 115, 300, 330
HaeIII GGCC 2 cut(s) 128, 146
Hin1II CATG 1 cut(s) 446
HincII GTYRAC 2 cut(s) 64, 106
HindII GTYRAC 2 cut(s) 64, 106
HpaI GTTAAC 1 cut(s) 106
HphI GGTGA 1 cut(s) 410
Hpy166II GTNNAC 2 cut(s) 64, 106
Hpy188I TCNGA 2 cut(s) 212, 490
Hpy188III TCNNGA 1 cut(s) 200
Hpy8I GTNNAC 2 cut(s) 64, 106
HpyAV CCTTC 1 cut(s) 28
HpyCH4III ACNGT 1 cut(s) 28
HpyCH4V TGCA 2 cut(s) 302, 473
HpyF10VI GCNNNNNNNGC 4 cut(s) 254, 275, 308, 329
HpyF3I CTNAG 1 cut(s) 99
Hsp92II CATG 1 cut(s) 446
KspAI GTTAAC 1 cut(s) 106
Kzo9I GATC 1 cut(s) 485
LmnI GCTCC 2 cut(s) 275, 316
LpnPI CCDG 6 cut(s) 72, 189, 255, 368, 429, 445
Lsp1109I GCAGC 3 cut(s) 126, 286, 341
MaeI CTAG 1 cut(s) 180
MaeIII GTNAC 1 cut(s) 436
MalI GATC 1 cut(s) 487
MboI GATC 1 cut(s) 485
MboII GAAGA 4 cut(s) 43, 215, 422, 458
MhlI GDGCHC 1 cut(s) 234
MlsI TGGCCA 1 cut(s) 128
MluCI AATT 2 cut(s) 122, 466
MluNI TGGCCA 1 cut(s) 128
MmeI TCCRAC 1 cut(s) 58
MnlI CCTC 3 cut(s) 94, 379, 445
Mox20I TGGCCA 1 cut(s) 128
MscI TGGCCA 1 cut(s) 128
MseI TTAA 1 cut(s) 105
MslI CAYNNNNRTG 2 cut(s) 237, 447
Msp20I TGGCCA 1 cut(s) 128
MspA1I CMGCKG 2 cut(s) 117, 257
Mva1269I GAATGC 1 cut(s) 370
MwoI GCNNNNNNNGC 4 cut(s) 254, 275, 308, 329
NdeI CATATG 1 cut(s) 316
NdeII GATC 1 cut(s) 485
NlaIII CATG 1 cut(s) 446
NlaIV GGNNCC 1 cut(s) 156
NmuCI GTSAC 1 cut(s) 436
PctI GAATGC 1 cut(s) 370
PkrI GCNGC 4 cut(s) 10, 116, 301, 331
PpuMI RGGWCCY 1 cut(s) 154
Psp5II RGGWCCY 1 cut(s) 154
PspN4I GGNNCC 1 cut(s) 156
PspPI GGNCC 1 cut(s) 154
PspPPI RGGWCCY 1 cut(s) 154
PstI CTGCAG 1 cut(s) 304
PstNI CAGNNNCTG 1 cut(s) 98
PvuII CAGCTG 1 cut(s) 257
RseI CAYNNNNRTG 2 cut(s) 237, 447
SaqAI TTAA 1 cut(s) 105
SatI GCNGC 4 cut(s) 9, 115, 300, 330
Sau3AI GATC 1 cut(s) 485
Sau96I GGNCC 1 cut(s) 154
SduI GDGCHC 1 cut(s) 234
SetI ASST 9 cut(s) 78, 105, 250, 259, 271, 313, 325, 334, 418
SfcI CTRYAG 1 cut(s) 300
SinI GGWCC 1 cut(s) 154
SmiMI CAYNNNNRTG 2 cut(s) 237, 447
Sse9I AATT 2 cut(s) 122, 466
SsiI CCGC 2 cut(s) 117, 273
SspMI CTAG 1 cut(s) 180
TaaI ACNGT 1 cut(s) 28
TaqI TCGA 1 cut(s) 484
TasI AATT 2 cut(s) 122, 466
Tru1I TTAA 1 cut(s) 105
Tru9I TTAA 1 cut(s) 105
TscAI CASTG 1 cut(s) 99
TseFI GTSAC 1 cut(s) 436
TseI GCWGC 4 cut(s) 8, 114, 299, 329
Tsp45I GTSAC 1 cut(s) 436
TspDTI ATGAA 6 cut(s) 17, 333, 366, 377, 423, 459
TspGWI ACGGA 2 cut(s) 359, 407
TspRI CASTG 1 cut(s) 99
VpaK11BI GGWCC 1 cut(s) 154
XapI RAATTY 1 cut(s) 466
XspI CTAG 1 cut(s) 180
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.