Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0001626

Physical Location & Seq

Genomic Coordinates Forward (+)

25999218 .. 26002168

Gene Structure 2951 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G276300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

ATGAGGGCTGCCAAAGGTAAGGGGGCAGCGAAGATCTCCAAGGAAGCTCTAAAGCCTGTGGATGATGGAAGGGTTGGGAAGCGGAAGGCTGCTGCCGCAGATGACAAGACTAGCAAACGAAAGGCCAGGAAGGAGAAAAGGGCCAAGAAAGACCCCAACAAACCTAAGAGGCCGCCTAGTGCCTTTTTCGTGTTCCTTGAGGAGTTCAGGAAGGAGTTCAAGAAAGAGAACCCTAATGTGAAGGGTGTAGCGGCTGTTGGAAAAGCTGGAGGAGACAAGTGGAAATCCCTGTCTGATGCAGAAAAAGCTCCATATGAAGCCAAGGCTGCAAAAAGGAAGGCTGAGTATGAAAAGCAGATGAAAGCCTACAACAAAAAGCAGGAGAGTGGGGCAGATGATGGTGATGAAGAGTCGGAGAGGTCAAGATCTGAGGTAAATGATGAAGAGGACGAGGCTAGTGGGGAGGAGGGGCAGCCCCCGGAAGAGGAGGAAGAAGAGGAAGTGGAGGATGAGGAAGAAGAGGAGGATGATGAAGATGATGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000785 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003700 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006325 GO:0006333 GO:0006355 GO:0006996 GO:0008150 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0030527 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051276 GO:0060255 GO:0065007 GO:0071840 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03410 ko04140 ko04217 map03410 map04140 map04217

Pfam Domains

Protein Families

HMG_box

Protein Analysis

182

Amino Acids

20.28

Weight (kDa)

4.97

Isoelectric Point (pI)

62.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001626)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51880 AT3G51880 AT3G51880 AT3G51880 AT3G51880
fragaria_vesca	FvH4_6g11530 FvH4_6g11530 FvH4_6g11530 FvH4_6g11530 FvH4_7g24360 FvH4_7g24360 FvH4_7g24360
malus_domestica	MD01G1132900.v1.1 MD07G1220600.v1.1
prunus_persica	Prupe.2G249000_v2.0.a1 Prupe.2G249000_v2.0.a1 Prupe.6G276300_v2.0.a1 Prupe.6G276300_v2.0.a1 Prupe.6G276300_v2.0.a1 Prupe.6G276300_v2.0.a1
pyrus_communis	pycom01g16950 pycom07g19960
rosa_chinensis	RchiOBHm_Chr1g0370021 RchiOBHm_Chr3g0463231
rosa_laevigata	RLG00000024799
rosa_multiflora	Rmu_co8427781.1_g000001 Rmu_sc0005056.1_g000014 Rmu_sc0008079.1_g000019 Rmu_sc0022743.1_g000005 Rmu_sc0022743.1_g000006
rosa_roxburghii	Rroxscaffold_4G00286860 Rroxscaffold_4G00287170 Rroxscaffold_6G00416770
rosa_rugosa	Rorug01G0353500 Rorug03G0062700 Rorug03G0062700 Rorug03G0062700 Rorug03G0062800 Rorug03G0062800
rosa_samantha	Rh1AG362200 Rh1BG325400 Rh1CG338700 Rh1DG355900 Rh3AG120800 Rh3BG125300 Rh3CG127300 Rh3DG126500
rosa_wichuraiana	Rw1G031870 Rw3G010260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	82, 96, 173, 251
AfiI	CCNNNNNNNGG	1 cut(s)	484
AgsI	TTSAA	1 cut(s)	220
AjnI	CCWGG	1 cut(s)	125
AluBI	AGCT	3 cut(s)	47, 266, 308
AluI	AGCT	3 cut(s)	47, 266, 308
Alw26I	GTCTC	1 cut(s)	267
AoxI	GGCC	3 cut(s)	123, 141, 170
ApeKI	GCWGC	6 cut(s)	8, 26, 89, 92, 326, 472
Asp700I	GAANNNNTTC	1 cut(s)	215
AspS9I	GGNCC	1 cut(s)	141
AsuC2I	CCSGG	1 cut(s)	479
AsuHPI	GGTGA	1 cut(s)	413
BbvI	GCAGC	5 cut(s)	38, 76, 79, 313, 484
BccI	CCATC	2 cut(s)	59, 392
BciT130I	CCWGG	1 cut(s)	127
BcnI	CCSGG	1 cut(s)	479
BcoDI	GTCTC	1 cut(s)	267
BfaI	CTAG	3 cut(s)	111, 177, 456
BglII	AGATCT	2 cut(s)	33, 425
BisI	GCNGC	9 cut(s)	9, 27, 90, 93, 96, 173, 252, 327, 473
BlsI	GCNGC	9 cut(s)	10, 28, 91, 94, 97, 174, 253, 328, 474
Bme1390I	CCNGG	2 cut(s)	127, 479
BmgT120I	GGNCC	1 cut(s)	141
BmrFI	CCNGG	2 cut(s)	127, 479
BmsI	GCATC	1 cut(s)	286
BpmI	CTGGAG	1 cut(s)	288
BpuEI	CTTGAG	1 cut(s)	218
BpuMI	CCSGG	1 cut(s)	479
BsaJI	CCNNGG	3 cut(s)	39, 321, 477
Bsc4I	CCNNNNNNNGG	1 cut(s)	484
BseBI	CCWGG	1 cut(s)	127
BseDI	CCNNGG	3 cut(s)	39, 321, 477
BseGI	GGATG	3 cut(s)	67, 514, 532
BseLI	CCNNNNNNNGG	1 cut(s)	484
BseMII	CTCAG	2 cut(s)	333, 420
BseRI	GAGGAG	5 cut(s)	215, 285, 479, 500, 536
BseXI	GCAGC	5 cut(s)	38, 76, 79, 313, 484
BshFI	GGCC	3 cut(s)	125, 143, 172
BsiSI	CCGG	1 cut(s)	479
BslI	CCNNNNNNNGG	1 cut(s)	484
BsmAI	GTCTC	1 cut(s)	267
BsnI	GGCC	3 cut(s)	125, 143, 172
Bsp143I	GATC	2 cut(s)	33, 425
BspACI	CCGC	4 cut(s)	82, 96, 173, 251
BspANI	GGCC	3 cut(s)	125, 143, 172
BspCNI	CTCAG	2 cut(s)	334, 421
BssECI	CCNNGG	3 cut(s)	39, 321, 477
BssMI	GATC	2 cut(s)	33, 425
BssT1I	CCWWGG	2 cut(s)	39, 321
Bst2UI	CCWGG	1 cut(s)	127
Bst6I	CTCTTC	5 cut(s)	402, 438, 477, 489, 513
BstDEI	CTNAG	3 cut(s)	165, 342, 429
BstF5I	GGATG	3 cut(s)	67, 514, 532
BstKTI	GATC	2 cut(s)	36, 428
BstMAI	GTCTC	1 cut(s)	267
BstMBI	GATC	2 cut(s)	33, 425
BstMWI	GCNNNNNNNGC	3 cut(s)	95, 305, 326
BstNI	CCWGG	1 cut(s)	127
BstSCI	CCNGG	2 cut(s)	125, 477
BstV1I	GCAGC	5 cut(s)	38, 76, 79, 313, 484
BstX2I	RGATCY	2 cut(s)	33, 425
BstYI	RGATCY	2 cut(s)	33, 425
BsuRI	GGCC	3 cut(s)	125, 143, 172
BtsCI	GGATG	3 cut(s)	67, 514, 532
Cfr13I	GGNCC	1 cut(s)	141
DdeI	CTNAG	3 cut(s)	165, 342, 429
DpnI	GATC	2 cut(s)	35, 427
DpnII	GATC	2 cut(s)	33, 425
Eam1104I	CTCTTC	5 cut(s)	402, 438, 477, 489, 513
EarI	CTCTTC	5 cut(s)	402, 438, 477, 489, 513
Eco130I	CCWWGG	2 cut(s)	39, 321
EcoRII	CCWGG	1 cut(s)	125
EcoT14I	CCWWGG	2 cut(s)	39, 321
ErhI	CCWWGG	2 cut(s)	39, 321
FaiI	YATR	3 cut(s)	313, 315, 348
FauNDI	CATATG	1 cut(s)	313
Fnu4HI	GCNGC	9 cut(s)	9, 27, 90, 93, 96, 173, 252, 327, 473
FokI	GGATG	3 cut(s)	74, 521, 539
Fsp4HI	GCNGC	9 cut(s)	9, 27, 90, 93, 96, 173, 252, 327, 473
FspBI	CTAG	3 cut(s)	111, 177, 456
GluI	GCNGC	9 cut(s)	9, 27, 90, 93, 96, 173, 252, 327, 473
GsuI	CTGGAG	1 cut(s)	288
HaeIII	GGCC	3 cut(s)	125, 143, 172
HapII	CCGG	1 cut(s)	479
HinfI	GANTC	1 cut(s)	410
HpaII	CCGG	1 cut(s)	479
HphI	GGTGA	1 cut(s)	413
Hpy188I	TCNGA	3 cut(s)	295, 415, 430
Hpy188III	TCNNGA	3 cut(s)	208, 220, 423
HpyAV	CCTTC	6 cut(s)	63, 79, 124, 205, 235, 331
HpyCH4V	TGCA	2 cut(s)	299, 329
HpyF10VI	GCNNNNNNNGC	3 cut(s)	95, 305, 326
HpyF3I	CTNAG	3 cut(s)	165, 342, 429
Kzo9I	GATC	2 cut(s)	33, 425
LmnI	GCTCC	1 cut(s)	313
LpnPI	CCDG	8 cut(s)	69, 112, 139, 193, 252, 302, 365, 492
Lsp1109I	GCAGC	5 cut(s)	38, 76, 79, 313, 484
LweI	GCATC	1 cut(s)	286
MaeI	CTAG	3 cut(s)	111, 177, 456
MalI	GATC	2 cut(s)	35, 427
MboI	GATC	2 cut(s)	33, 425
MboII	GAAGA	9 cut(s)	43, 419, 455, 494, 503, 506, 527, 530, 545
MflI	RGATCY	2 cut(s)	33, 425
MlyI	GAGTC	1 cut(s)	419
MmeI	TCCRAC	2 cut(s)	238, 393
MroXI	GAANNNNTTC	1 cut(s)	215
MspI	CCGG	1 cut(s)	479
MspR9I	CCNGG	2 cut(s)	127, 479
MvaI	CCWGG	1 cut(s)	127
MwoI	GCNNNNNNNGC	3 cut(s)	95, 305, 326
NciI	CCSGG	1 cut(s)	479
NdeI	CATATG	1 cut(s)	313
NdeII	GATC	2 cut(s)	33, 425
PdmI	GAANNNNTTC	1 cut(s)	215
PkrI	GCNGC	9 cut(s)	10, 28, 91, 94, 97, 174, 253, 328, 474
PleI	GAGTC	1 cut(s)	418
PpsI	GAGTC	1 cut(s)	418
Psp6I	CCWGG	1 cut(s)	125
PspGI	CCWGG	1 cut(s)	125
PspPI	GGNCC	1 cut(s)	141
PsuI	RGATCY	2 cut(s)	33, 425
SatI	GCNGC	9 cut(s)	9, 27, 90, 93, 96, 173, 252, 327, 473
Sau3AI	GATC	2 cut(s)	33, 425
Sau96I	GGNCC	1 cut(s)	141
SchI	GAGTC	1 cut(s)	419
ScrFI	CCNGG	2 cut(s)	127, 479
SetI	ASST	7 cut(s)	19, 49, 166, 268, 310, 422, 435
SfaNI	GCATC	1 cut(s)	286
SmlI	CTYRAG	1 cut(s)	197
SmoI	CTYRAG	1 cut(s)	197
SsiI	CCGC	4 cut(s)	82, 96, 173, 251
SspMI	CTAG	3 cut(s)	111, 177, 456
StyD4I	CCNGG	2 cut(s)	125, 477
StyI	CCWWGG	2 cut(s)	39, 321
TauI	GCSGC	3 cut(s)	98, 175, 254
TseI	GCWGC	6 cut(s)	8, 26, 89, 92, 326, 472
TspDTI	ATGAA	6 cut(s)	330, 363, 374, 420, 456, 546
XmnI	GAANNNNTTC	1 cut(s)	215
XspI	CTAG	3 cut(s)	111, 177, 456

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.