Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0001626

Physical Location & Seq

Genomic Coordinates Forward (+)

39206010 .. 39207783

Gene Structure 1774 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000024799

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGAGGGCTGCCAAGGCTAAGGCGGGAGCAAGAGCCCTGAAACCTGTCGATGATGGGAGAGTTGGGAAACGAAAGGCTGCTGCTGCTCCAGTTGATAAGAGTAGCAAAGGTAAGGCCAAGCAGACGAAGAAGGCCAAGAAAGACCCCAACAAGCCTAAGAGGCCACCTAGTGCCTTTTTCGTGTTCCTTGGTCAGTTCAGGGAAGAGTTCAAGAAAAAGAACCCTAATGTGAAAGGGGTAGCAGCTGTTGGAAAAGCTGGAGGAGAAAAGTGGAGATCCCTGTCTGATGCTGAAAAAGCTCCATATGAAGCTGAGTCTGCAAAAGCGAAGACTGAGTATGAAAAGCAGCTGAAAATCTATGACAAAAAGCAGAGTGCAGCTGATGATGGTGATGAAGAGTCAGAGAGGTCAAGATCTGAAGTGCATGATGAAGACGATGAGGCTAGTGGGGAGGAGGCGCAGCCAAAAGCGGAGGAAGCAGAGGAGGAAGAGGTGGGTGACGAAGATGAAGGGGAGGACGAGGGTGAAGAAGAGGAAGATGACGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000785 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003700 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006325 GO:0006333 GO:0006355 GO:0006996 GO:0008150 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0030527 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051276 GO:0060255 GO:0065007 GO:0071840 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03410 ko04140 ko04217 map03410 map04140 map04217

Pfam Domains

Protein Families

HMG_box

Protein Analysis

183

Amino Acids

19.96

Weight (kDa)

4.97

Isoelectric Point (pI)

54.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HMG_box_2	PF09011	49 - 120	6.2e-15	HMG-box domain
HMG_box	PF00505	52 - 120	3.2e-22	HMG (high mobility group) box
HMG_WDHD1	PF24815	55 - 102	5.1e-11	WDHD1 HMG box

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001626)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51880 AT3G51880 AT3G51880 AT3G51880 AT3G51880
fragaria_vesca	FvH4_6g11530 FvH4_6g11530 FvH4_6g11530 FvH4_6g11530 FvH4_7g24360 FvH4_7g24360 FvH4_7g24360
malus_domestica	MD01G1132900.v1.1 MD07G1220600.v1.1
prunus_persica	Prupe.2G249000_v2.0.a1 Prupe.2G249000_v2.0.a1 Prupe.6G276300_v2.0.a1 Prupe.6G276300_v2.0.a1 Prupe.6G276300_v2.0.a1 Prupe.6G276300_v2.0.a1
pyrus_communis	pycom01g16950 pycom07g19960
rosa_chinensis	RchiOBHm_Chr1g0370021 RchiOBHm_Chr3g0463231
rosa_laevigata	RLG00000024799
rosa_multiflora	Rmu_co8427781.1_g000001 Rmu_sc0005056.1_g000014 Rmu_sc0008079.1_g000019 Rmu_sc0022743.1_g000005 Rmu_sc0022743.1_g000006
rosa_roxburghii	Rroxscaffold_4G00286860 Rroxscaffold_4G00287170 Rroxscaffold_6G00416770
rosa_rugosa	Rorug01G0353500 Rorug03G0062700 Rorug03G0062700 Rorug03G0062700 Rorug03G0062800 Rorug03G0062800
rosa_samantha	Rh1AG362200 Rh1BG325400 Rh1CG338700 Rh1DG355900 Rh3AG120800 Rh3BG125300 Rh3CG127300 Rh3DG126500
rosa_wichuraiana	Rw1G031870 Rw3G010260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	23, 470
AclWI	GGATC	1 cut(s)	270
AcuI	CTGAAG	1 cut(s)	438
AdeI	CACNNNGTG	1 cut(s)	170
AgsI	TTSAA	1 cut(s)	211
AluBI	AGCT	6 cut(s)	245, 257, 299, 311, 349, 380
AluI	AGCT	6 cut(s)	245, 257, 299, 311, 349, 380
AlwI	GGATC	1 cut(s)	270
AoxI	GGCC	3 cut(s)	114, 132, 161
ApeKI	GCWGC	8 cut(s)	8, 77, 80, 83, 242, 346, 377, 460
AspLEI	GCGC	1 cut(s)	460
AsuHPI	GGTGA	3 cut(s)	401, 509, 536
BanII	GRGCYC	1 cut(s)	37
BbsI	GAAGAC	2 cut(s)	335, 438
BbvI	GCAGC	7 cut(s)	64, 67, 70, 254, 358, 389, 472
BccI	CCATC	2 cut(s)	47, 380
BfaI	CTAG	2 cut(s)	168, 444
BglI	GCCNNNNNGGC	1 cut(s)	160
BglII	AGATCT	1 cut(s)	413
BisI	GCNGC	8 cut(s)	9, 78, 81, 84, 243, 347, 378, 461
BlsI	GCNGC	8 cut(s)	10, 79, 82, 85, 244, 348, 379, 462
BmsI	GCATC	1 cut(s)	277
BpiI	GAAGAC	2 cut(s)	335, 438
BpmI	CTGGAG	2 cut(s)	72, 279
Bpu10I	CCTNAGC	1 cut(s)	18
BsaJI	CCNNGG	2 cut(s)	12, 187
Bse1I	ACTGG	1 cut(s)	89
BseDI	CCNNGG	2 cut(s)	12, 187
BseMII	CTCAG	2 cut(s)	303, 324
BseNI	ACTGG	1 cut(s)	89
BseRI	GAGGAG	3 cut(s)	276, 467, 497
BseXI	GCAGC	7 cut(s)	64, 67, 70, 254, 358, 389, 472
BsgI	GTGCAG	1 cut(s)	396
BshFI	GGCC	3 cut(s)	116, 134, 163
BsnI	GGCC	3 cut(s)	116, 134, 163
Bsp1286I	GDGCHC	1 cut(s)	37
Bsp143I	GATC	2 cut(s)	275, 413
BspACI	CCGC	2 cut(s)	23, 470
BspANI	GGCC	3 cut(s)	116, 134, 163
BspCNI	CTCAG	2 cut(s)	304, 325
BspPI	GGATC	1 cut(s)	270
BsrI	ACTGG	1 cut(s)	89
BssECI	CCNNGG	2 cut(s)	12, 187
BssMI	GATC	2 cut(s)	275, 413
BssT1I	CCWWGG	2 cut(s)	12, 187
Bst6I	CTCTTC	4 cut(s)	198, 390, 483, 525
BstDEI	CTNAG	4 cut(s)	18, 156, 312, 333
BstHHI	GCGC	1 cut(s)	460
BstKTI	GATC	2 cut(s)	278, 416
BstMBI	GATC	2 cut(s)	275, 413
BstMWI	GCNNNNNNNGC	6 cut(s)	14, 83, 160, 296, 317, 476
BstV1I	GCAGC	7 cut(s)	64, 67, 70, 254, 358, 389, 472
BstV2I	GAAGAC	2 cut(s)	335, 438
BstX2I	RGATCY	2 cut(s)	275, 413
BstYI	RGATCY	2 cut(s)	275, 413
BsuRI	GGCC	3 cut(s)	116, 134, 163
CfoI	GCGC	1 cut(s)	460
CviAII	CATG	1 cut(s)	425
DdeI	CTNAG	4 cut(s)	18, 156, 312, 333
DpnI	GATC	2 cut(s)	277, 415
DpnII	GATC	2 cut(s)	275, 413
DraIII	CACNNNGTG	1 cut(s)	170
Eam1104I	CTCTTC	4 cut(s)	198, 390, 483, 525
EarI	CTCTTC	4 cut(s)	198, 390, 483, 525
Eco130I	CCWWGG	2 cut(s)	12, 187
Eco24I	GRGCYC	1 cut(s)	37
Eco57I	CTGAAG	1 cut(s)	438
EcoT14I	CCWWGG	2 cut(s)	12, 187
EcoT38I	GRGCYC	1 cut(s)	37
ErhI	CCWWGG	2 cut(s)	12, 187
FaeI	CATG	1 cut(s)	428
FaiI	YATR	5 cut(s)	304, 306, 339, 360, 426
FatI	CATG	1 cut(s)	424
FauI	CCCGC	1 cut(s)	16
FauNDI	CATATG	1 cut(s)	304
Fnu4HI	GCNGC	8 cut(s)	9, 78, 81, 84, 243, 347, 378, 461
FriOI	GRGCYC	1 cut(s)	37
Fsp4HI	GCNGC	8 cut(s)	9, 78, 81, 84, 243, 347, 378, 461
FspBI	CTAG	2 cut(s)	168, 444
GlaI	GCGC	1 cut(s)	459
GluI	GCNGC	8 cut(s)	9, 78, 81, 84, 243, 347, 378, 461
GsuI	CTGGAG	2 cut(s)	72, 279
HaeIII	GGCC	3 cut(s)	116, 134, 163
HhaI	GCGC	1 cut(s)	460
Hin1II	CATG	1 cut(s)	428
Hin6I	GCGC	1 cut(s)	458
HinP1I	GCGC	1 cut(s)	458
HinfI	GANTC	2 cut(s)	314, 398
HphI	GGTGA	3 cut(s)	401, 509, 536
Hpy188I	TCNGA	3 cut(s)	286, 403, 418
Hpy188III	TCNNGA	2 cut(s)	211, 411
HpyAV	CCTTC	2 cut(s)	124, 503
HpyCH4V	TGCA	3 cut(s)	320, 377, 424
HpyF10VI	GCNNNNNNNGC	6 cut(s)	14, 83, 160, 296, 317, 476
HpyF3I	CTNAG	4 cut(s)	18, 156, 312, 333
Hsp92II	CATG	1 cut(s)	428
HspAI	GCGC	1 cut(s)	458
Kzo9I	GATC	2 cut(s)	275, 413
LmnI	GCTCC	3 cut(s)	26, 91, 304
LpnPI	CCDG	6 cut(s)	50, 57, 102, 184, 243, 293
Lsp1109I	GCAGC	7 cut(s)	64, 67, 70, 254, 358, 389, 472
LweI	GCATC	1 cut(s)	277
MaeI	CTAG	2 cut(s)	168, 444
MaeIII	GTNAC	1 cut(s)	497
MalI	GATC	2 cut(s)	277, 415
MboI	GATC	2 cut(s)	275, 413
MflI	RGATCY	2 cut(s)	275, 413
MhlI	GDGCHC	1 cut(s)	37
MlyI	GAGTC	2 cut(s)	323, 407
MmeI	TCCRAC	1 cut(s)	229
MspA1I	CMGCKG	3 cut(s)	245, 349, 380
MwoI	GCNNNNNNNGC	6 cut(s)	14, 83, 160, 296, 317, 476
NdeI	CATATG	1 cut(s)	304
NdeII	GATC	2 cut(s)	275, 413
NlaIII	CATG	1 cut(s)	428
NmuCI	GTSAC	1 cut(s)	497
PkrI	GCNGC	8 cut(s)	10, 79, 82, 85, 244, 348, 379, 462
PleI	GAGTC	2 cut(s)	322, 406
PpsI	GAGTC	2 cut(s)	322, 406
PsuI	RGATCY	2 cut(s)	275, 413
PvuII	CAGCTG	3 cut(s)	245, 349, 380
SatI	GCNGC	8 cut(s)	9, 78, 81, 84, 243, 347, 378, 461
Sau3AI	GATC	2 cut(s)	275, 413
SchI	GAGTC	2 cut(s)	323, 407
SduI	GDGCHC	1 cut(s)	37
SfaNI	GCATC	1 cut(s)	277
SsiI	CCGC	2 cut(s)	23, 470
SspMI	CTAG	2 cut(s)	168, 444
StyI	CCWWGG	2 cut(s)	12, 187
TaqI	TCGA	1 cut(s)	48
TseFI	GTSAC	1 cut(s)	497
TseI	GCWGC	8 cut(s)	8, 77, 80, 83, 242, 346, 377, 460
Tsp45I	GTSAC	1 cut(s)	497
TspDTI	ATGAA	5 cut(s)	321, 354, 408, 444, 522
XspI	CTAG	2 cut(s)	168, 444

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.