MD07G1220600.v1.1

High mobility group B protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
OG0001626
Physical Location & Seq
Forward (+)
29786627 .. 29790176
3550 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1220600.v1.1.491

Sequence Viewer

Length: 543 bp
ATGCGATTCTTCCATCTAAAGCTGTCTGTTGAGAATGAAGGCTTCCAAAGGCAAGGGACCTGTGAGGAAGGACAAGAAAGAAGTATTAAAGCCTGTCGAGGAGATGTGGGAAAACGAAAGGCTGCGATTGAGGCTGACAAGAGTCGCCGAAAACTTGCTAAGAACGCAAAATTGGGCAAGAAGGACCCCAATAAACCAAAGAGACCAGCGAGTGCTTTCTTTGTTTTTCTAGAAGAGTTCAGGACGGTTTACAAGAAAGAGCATCCGAATGTGAAAGCTGTGTCAGCTGTGGGGAAAGCTGGTGGAGAAAAGTGGAAATCTATGTCAACTGCGGAGAAAGCTCCATATGAAGCTAAAGCAGCAAAAAGGAAAACGGAGTATGAAAAACTTATGAAAGCTTACAACAACAAAGAGGATGACGAGGAGGATGACGAGGAAGAAGTTGCTGAAAGGTCAAAACCCATTGCGAAGATTGTGGAAGAAGAAGAGAGTGCTGAGGAAGACGATGAAGAAGATGACGACGATGATGAAGATGAAGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03410 ko04140 ko04217 map03410 map04140 map04217
Pfam Domains
Protein Families
HMG_box

Protein Analysis

181

Amino Acids

20.58

Weight (kDa)

5.1

Isoelectric Point (pI)

55.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HMG_box_2 PF09011 63 - 135 2.5e-13 HMG-box domain
HMG_box PF00505 66 - 135 1e-21 HMG (high mobility group) box
HMG_WDHD1 PF24815 69 - 119 2.3e-10 WDHD1 HMG box
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 332
AjuI GAANNNNNNNTTGG 2 cut(s) 155, 187
AluBI AGCT 7 cut(s) 22, 278, 287, 299, 341, 353, 398
AluI AGCT 7 cut(s) 22, 278, 287, 299, 341, 353, 398
Alw26I GTCTC 1 cut(s) 196
ApeKI GCWGC 2 cut(s) 122, 359
AspS9I GGNCC 2 cut(s) 57, 184
AvaII GGWCC 2 cut(s) 57, 184
BbsI GAAGAC 1 cut(s) 507
BbvCI CCTCAGC 1 cut(s) 495
BbvI GCAGC 2 cut(s) 109, 371
BccI CCATC 1 cut(s) 21
BcoDI GTCTC 1 cut(s) 196
BfaI CTAG 1 cut(s) 230
BisI GCNGC 2 cut(s) 123, 360
BlsI GCNGC 2 cut(s) 124, 361
Bme18I GGWCC 2 cut(s) 57, 184
BmgT120I GGNCC 2 cut(s) 57, 184
BmiI GGNNCC 2 cut(s) 58, 186
BmsI GCATC 1 cut(s) 271
BoxI GACNNNNGTC 1 cut(s) 141
BpiI GAAGAC 1 cut(s) 507
Bpu10I CCTNAGC 1 cut(s) 495
BsaI GGTCTC 1 cut(s) 196
Bse3DI GCAATG 1 cut(s) 462
BseGI GGATG 3 cut(s) 262, 421, 433
BseMI GCAATG 1 cut(s) 462
BseMII CTCAG 1 cut(s) 486
BseRI GAGGAG 2 cut(s) 114, 437
BseXI GCAGC 2 cut(s) 109, 371
BslFI GGGAC 1 cut(s) 70
BsmAI GTCTC 1 cut(s) 196
BsmFI GGGAC 1 cut(s) 70
Bso31I GGTCTC 1 cut(s) 196
BspACI CCGC 1 cut(s) 332
BspCNI CTCAG 1 cut(s) 487
BspLI GGNNCC 2 cut(s) 58, 186
BspTNI GGTCTC 1 cut(s) 196
BsrDI GCAATG 1 cut(s) 462
Bst4CI ACNGT 1 cut(s) 247
Bst6I CTCTTC 2 cut(s) 228, 480
BstDEI CTNAG 2 cut(s) 159, 495
BstF5I GGATG 3 cut(s) 262, 421, 433
BstMAI GTCTC 1 cut(s) 196
BstMWI GCNNNNNNNGC 5 cut(s) 131, 164, 284, 338, 359
BstPAI GACNNNNGTC 1 cut(s) 141
BstV1I GCAGC 2 cut(s) 109, 371
BstV2I GAAGAC 1 cut(s) 507
BtsCI GGATG 3 cut(s) 262, 421, 433
Cfr13I GGNCC 2 cut(s) 57, 184
DdeI CTNAG 2 cut(s) 159, 495
Eam1104I CTCTTC 2 cut(s) 228, 480
EarI CTCTTC 2 cut(s) 228, 480
Eco31I GGTCTC 1 cut(s) 196
Eco47I GGWCC 2 cut(s) 57, 184
EcoO109I RGGNCCY 2 cut(s) 57, 184
FaiI YATR 5 cut(s) 323, 346, 348, 381, 392
FaqI GGGAC 1 cut(s) 70
FauNDI CATATG 1 cut(s) 346
Fnu4HI GCNGC 2 cut(s) 123, 360
FokI GGATG 3 cut(s) 249, 428, 440
Fsp4HI GCNGC 2 cut(s) 123, 360
FspBI CTAG 1 cut(s) 230
GluI GCNGC 2 cut(s) 123, 360
HincII GTYRAC 1 cut(s) 327
HindII GTYRAC 1 cut(s) 327
HindIII AAGCTT 1 cut(s) 396
HinfI GANTC 2 cut(s) 6, 142
Hpy166II GTNNAC 2 cut(s) 250, 327
Hpy188I TCNGA 1 cut(s) 267
Hpy188III TCNNGA 2 cut(s) 230, 241
Hpy8I GTNNAC 2 cut(s) 250, 327
Hpy99I CGWCG 1 cut(s) 524
HpyAV CCTTC 3 cut(s) 32, 62, 175
HpyCH4III ACNGT 1 cut(s) 247
HpyF10VI GCNNNNNNNGC 5 cut(s) 131, 164, 284, 338, 359
HpyF3I CTNAG 2 cut(s) 159, 495
LmnI GCTCC 1 cut(s) 346
LpnPI CCDG 5 cut(s) 73, 106, 219, 226, 285
Lsp1109I GCAGC 2 cut(s) 109, 371
LweI GCATC 1 cut(s) 271
MaeI CTAG 1 cut(s) 230
MluCI AATT 1 cut(s) 170
MlyI GAGTC 1 cut(s) 151
MnlI CCTC 8 cut(s) 58, 92, 124, 406, 415, 418, 427, 490
MseI TTAA 1 cut(s) 87
MslI CAYNNNNRTG 1 cut(s) 267
MspA1I CMGCKG 1 cut(s) 287
MwoI GCNNNNNNNGC 5 cut(s) 131, 164, 284, 338, 359
NdeI CATATG 1 cut(s) 346
NlaIV GGNNCC 2 cut(s) 58, 186
PfeI GAWTC 1 cut(s) 6
PkrI GCNGC 2 cut(s) 124, 361
PleI GAGTC 1 cut(s) 150
PpsI GAGTC 1 cut(s) 150
PpuMI RGGWCCY 2 cut(s) 57, 184
PshAI GACNNNNGTC 1 cut(s) 141
Psp5II RGGWCCY 2 cut(s) 57, 184
PspN4I GGNNCC 2 cut(s) 58, 186
PspPI GGNCC 2 cut(s) 57, 184
PspPPI RGGWCCY 2 cut(s) 57, 184
PvuII CAGCTG 1 cut(s) 287
RseI CAYNNNNRTG 1 cut(s) 267
SaqAI TTAA 1 cut(s) 87
SatI GCNGC 2 cut(s) 123, 360
Sau96I GGNCC 2 cut(s) 57, 184
SchI GAGTC 1 cut(s) 151
SetI ASST 9 cut(s) 24, 62, 280, 289, 301, 343, 355, 400, 455
SfaNI GCATC 1 cut(s) 271
SinI GGWCC 2 cut(s) 57, 184
SmiMI CAYNNNNRTG 1 cut(s) 267
Sse9I AATT 1 cut(s) 170
SsiI CCGC 1 cut(s) 332
SspMI CTAG 1 cut(s) 230
TaaI ACNGT 1 cut(s) 247
TaqI TCGA 1 cut(s) 97
TasI AATT 1 cut(s) 170
TfiI GAWTC 1 cut(s) 6
Tru1I TTAA 1 cut(s) 87
Tru9I TTAA 1 cut(s) 87
TseI GCWGC 2 cut(s) 122, 359
TspDTI ATGAA 6 cut(s) 51, 363, 396, 407, 522, 543
TspGWI ACGGA 1 cut(s) 389
VpaK11BI GGWCC 2 cut(s) 57, 184
XbaI TCTAGA 1 cut(s) 229
XspI CTAG 1 cut(s) 230
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.