Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0001626

Physical Location & Seq

Genomic Coordinates Forward (+)

60062145 .. 60064139

Gene Structure 1995 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G031870.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

ATGAAGGCTGCCAAAGGCAAAGGAACTGTGAAGAAGGACAAGAAAGAAGTATTGAAGCCTAAAGGTGGAAAGCGAAAGGCAGTGGCTGAGGTTAACAAGAGCAGCGGAAAATTGGCCAAGAACTCAAAATCGGCCAAAAAGGACCCTAACAAACCAAAGAAGCCTGCTAGTGCTTTTTTTGTTTTTCTTGAAGAGTTCAGAATAACTTACAAGCAAGAGCACCCGAATGTGAAAGCTGTGTCAGCTGTGGGGAAAGCTGGCGGAGCAAAGTGGAAATCTATGTCTGCTGCAGAGAAAGCTCCATATGAAGCTAAAGCAGCTAAAAGGAAAACGGAGTATGAAAAACTTATGAATGCCTACAACACTAAACAGGAGGATACGGATGGTGATGATGATGAAGAACCTGAAAAACCAAAAGCCAGCGTGACCCATGAAGATGAGGAGAGTGGGGAGGAAGATGATGAAGATGACGATGATGAGGATGATGAAGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03410 ko04140 ko04217 map03410 map04140 map04217

Pfam Domains

Protein Families

HMG_box

Protein Analysis

164

Amino Acids

18.12

Weight (kDa)

5.9

Isoelectric Point (pI)

35.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HMG_box_2	PF09011	49 - 121	1.7e-12	HMG-box domain
HMG_box	PF00505	52 - 121	8.6e-21	HMG (high mobility group) box
HMG_WDHD1	PF24815	55 - 105	4.2e-10	WDHD1 HMG box

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001626)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51880 AT3G51880 AT3G51880 AT3G51880 AT3G51880
fragaria_vesca	FvH4_6g11530 FvH4_6g11530 FvH4_6g11530 FvH4_6g11530 FvH4_7g24360 FvH4_7g24360 FvH4_7g24360
malus_domestica	MD01G1132900.v1.1 MD07G1220600.v1.1
prunus_persica	Prupe.2G249000_v2.0.a1 Prupe.2G249000_v2.0.a1 Prupe.6G276300_v2.0.a1 Prupe.6G276300_v2.0.a1 Prupe.6G276300_v2.0.a1 Prupe.6G276300_v2.0.a1
pyrus_communis	pycom01g16950 pycom07g19960
rosa_chinensis	RchiOBHm_Chr1g0370021 RchiOBHm_Chr3g0463231
rosa_laevigata	RLG00000024799
rosa_multiflora	Rmu_co8427781.1_g000001 Rmu_sc0005056.1_g000014 Rmu_sc0008079.1_g000019 Rmu_sc0022743.1_g000005 Rmu_sc0022743.1_g000006
rosa_roxburghii	Rroxscaffold_4G00286860 Rroxscaffold_4G00287170 Rroxscaffold_6G00416770
rosa_rugosa	Rorug01G0353500 Rorug03G0062700 Rorug03G0062700 Rorug03G0062700 Rorug03G0062800 Rorug03G0062800
rosa_samantha	Rh1AG362200 Rh1BG325400 Rh1CG338700 Rh1DG355900 Rh3AG120800 Rh3BG125300 Rh3CG127300 Rh3DG126500
rosa_wichuraiana	Rw1G031870 Rw3G010260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	105, 261
AcoI	YGGCCR	2 cut(s)	114, 132
AfiI	CCNNNNNNNGG	1 cut(s)	65
AgsI	TTSAA	2 cut(s)	55, 191
AluBI	AGCT	6 cut(s)	236, 245, 257, 299, 311, 320
AluI	AGCT	6 cut(s)	236, 245, 257, 299, 311, 320
Alw21I	GWGCWC	1 cut(s)	222
AlwNI	CAGNNNCTG	1 cut(s)	86
AoxI	GGCC	2 cut(s)	114, 132
ApeKI	GCWGC	4 cut(s)	8, 102, 287, 317
AspS9I	GGNCC	1 cut(s)	142
AsuHPI	GGTGA	1 cut(s)	398
AvaII	GGWCC	1 cut(s)	142
BalI	TGGCCA	1 cut(s)	116
Bbv12I	GWGCWC	1 cut(s)	222
BbvCI	CCTCAGC	1 cut(s)	87
BbvI	GCAGC	3 cut(s)	114, 274, 329
BccI	CCATC	1 cut(s)	377
BciVI	GTATCC	1 cut(s)	370
BfaI	CTAG	1 cut(s)	168
BfmI	CTRYAG	1 cut(s)	288
BfuI	GTATCC	1 cut(s)	370
BisI	GCNGC	4 cut(s)	9, 103, 288, 318
BlsI	GCNGC	4 cut(s)	10, 104, 289, 319
Bme18I	GGWCC	1 cut(s)	142
BmgT120I	GGNCC	1 cut(s)	142
BmiI	GGNNCC	1 cut(s)	144
Bpu10I	CCTNAGC	1 cut(s)	87
Bsc4I	CCNNNNNNNGG	1 cut(s)	65
BseGI	GGATG	2 cut(s)	388, 487
BseLI	CCNNNNNNNGG	1 cut(s)	65
BseMII	CTCAG	1 cut(s)	78
BseRI	GAGGAG	1 cut(s)	455
BseXI	GCAGC	3 cut(s)	114, 274, 329
BshFI	GGCC	2 cut(s)	116, 134
BsiHKAI	GWGCWC	1 cut(s)	222
BslI	CCNNNNNNNGG	1 cut(s)	65
BsmI	GAATGC	1 cut(s)	358
BsnI	GGCC	2 cut(s)	116, 134
Bsp1286I	GDGCHC	1 cut(s)	222
BspACI	CCGC	2 cut(s)	105, 261
BspANI	GGCC	2 cut(s)	116, 134
BspCNI	CTCAG	1 cut(s)	79
BspLI	GGNNCC	1 cut(s)	144
BspMAI	CTGCAG	1 cut(s)	292
Bst4CI	ACNGT	1 cut(s)	28
Bst6I	CTCTTC	1 cut(s)	186
BstC8I	GCNNGC	3 cut(s)	165, 259, 421
BstDEI	CTNAG	1 cut(s)	87
BstF5I	GGATG	2 cut(s)	388, 487
BstMWI	GCNNNNNNNGC	4 cut(s)	242, 263, 296, 317
BstSFI	CTRYAG	1 cut(s)	288
BstV1I	GCAGC	3 cut(s)	114, 274, 329
BsuI	GTATCC	1 cut(s)	370
BsuRI	GGCC	2 cut(s)	116, 134
BtsCI	GGATG	2 cut(s)	388, 487
BtsI	GCAGTG	1 cut(s)	87
BtsIMutI	CAGTG	1 cut(s)	87
Cac8I	GCNNGC	3 cut(s)	165, 259, 421
CaiI	CAGNNNCTG	1 cut(s)	86
Cfr13I	GGNCC	1 cut(s)	142
CviAII	CATG	1 cut(s)	431
DdeI	CTNAG	1 cut(s)	87
EaeI	YGGCCR	2 cut(s)	114, 132
Eam1104I	CTCTTC	1 cut(s)	186
EarI	CTCTTC	1 cut(s)	186
EciI	GGCGGA	1 cut(s)	276
Eco47I	GGWCC	1 cut(s)	142
EcoO109I	RGGNCCY	1 cut(s)	142
FaeI	CATG	1 cut(s)	434
FaiI	YATR	6 cut(s)	281, 304, 306, 339, 350, 432
FatI	CATG	1 cut(s)	430
FauNDI	CATATG	1 cut(s)	304
Fnu4HI	GCNGC	4 cut(s)	9, 103, 288, 318
FokI	GGATG	1 cut(s)	395
Fsp4HI	GCNGC	4 cut(s)	9, 103, 288, 318
FspBI	CTAG	1 cut(s)	168
GluI	GCNGC	4 cut(s)	9, 103, 288, 318
HaeIII	GGCC	2 cut(s)	116, 134
Hin1II	CATG	1 cut(s)	434
HincII	GTYRAC	1 cut(s)	94
HindII	GTYRAC	1 cut(s)	94
HpaI	GTTAAC	1 cut(s)	94
HphI	GGTGA	1 cut(s)	398
Hpy166II	GTNNAC	1 cut(s)	94
Hpy188I	TCNGA	1 cut(s)	200
Hpy188III	TCNNGA	1 cut(s)	188
Hpy8I	GTNNAC	1 cut(s)	94
HpyAV	CCTTC	1 cut(s)	28
HpyCH4III	ACNGT	1 cut(s)	28
HpyCH4V	TGCA	1 cut(s)	290
HpyF10VI	GCNNNNNNNGC	4 cut(s)	242, 263, 296, 317
HpyF3I	CTNAG	1 cut(s)	87
Hsp92II	CATG	1 cut(s)	434
KspAI	GTTAAC	1 cut(s)	94
LmnI	GCTCC	2 cut(s)	263, 304
LpnPI	CCDG	5 cut(s)	177, 243, 356, 417, 433
Lsp1109I	GCAGC	3 cut(s)	114, 274, 329
MaeI	CTAG	1 cut(s)	168
MaeIII	GTNAC	1 cut(s)	424
MboII	GAAGA	6 cut(s)	43, 203, 410, 446, 467, 476
MhlI	GDGCHC	1 cut(s)	222
MlsI	TGGCCA	1 cut(s)	116
MluCI	AATT	1 cut(s)	110
MluNI	TGGCCA	1 cut(s)	116
MnlI	CCTC	5 cut(s)	82, 367, 433, 445, 472
Mox20I	TGGCCA	1 cut(s)	116
MscI	TGGCCA	1 cut(s)	116
MseI	TTAA	1 cut(s)	93
MslI	CAYNNNNRTG	2 cut(s)	225, 435
Msp20I	TGGCCA	1 cut(s)	116
MspA1I	CMGCKG	2 cut(s)	105, 245
Mva1269I	GAATGC	1 cut(s)	358
MwoI	GCNNNNNNNGC	4 cut(s)	242, 263, 296, 317
NdeI	CATATG	1 cut(s)	304
NlaIII	CATG	1 cut(s)	434
NlaIV	GGNNCC	1 cut(s)	144
NmuCI	GTSAC	1 cut(s)	424
PctI	GAATGC	1 cut(s)	358
PkrI	GCNGC	4 cut(s)	10, 104, 289, 319
PpuMI	RGGWCCY	1 cut(s)	142
Psp5II	RGGWCCY	1 cut(s)	142
PspN4I	GGNNCC	1 cut(s)	144
PspPI	GGNCC	1 cut(s)	142
PspPPI	RGGWCCY	1 cut(s)	142
PstI	CTGCAG	1 cut(s)	292
PstNI	CAGNNNCTG	1 cut(s)	86
PvuII	CAGCTG	1 cut(s)	245
RseI	CAYNNNNRTG	2 cut(s)	225, 435
SaqAI	TTAA	1 cut(s)	93
SatI	GCNGC	4 cut(s)	9, 103, 288, 318
Sau96I	GGNCC	1 cut(s)	142
SduI	GDGCHC	1 cut(s)	222
SetI	ASST	9 cut(s)	67, 93, 238, 247, 259, 301, 313, 322, 406
SfcI	CTRYAG	1 cut(s)	288
SinI	GGWCC	1 cut(s)	142
SmiMI	CAYNNNNRTG	2 cut(s)	225, 435
Sse9I	AATT	1 cut(s)	110
SsiI	CCGC	2 cut(s)	105, 261
SspMI	CTAG	1 cut(s)	168
TaaI	ACNGT	1 cut(s)	28
TasI	AATT	1 cut(s)	110
Tru1I	TTAA	1 cut(s)	93
Tru9I	TTAA	1 cut(s)	93
TscAI	CASTG	1 cut(s)	87
TseFI	GTSAC	1 cut(s)	424
TseI	GCWGC	4 cut(s)	8, 102, 287, 317
Tsp45I	GTSAC	1 cut(s)	424
TspDTI	ATGAA	7 cut(s)	17, 321, 354, 365, 411, 447, 477
TspGWI	ACGGA	2 cut(s)	347, 395
TspRI	CASTG	1 cut(s)	87
VpaK11BI	GGWCC	1 cut(s)	142
XspI	CTAG	1 cut(s)	168

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.