Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8427781.1

Orthogroup ID

OG0001626

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1292

Gene Structure 1292 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8427781.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 560 bp

acgctaatctcggaacaatgagggctgccaaggctaaggcgggagcaagagccctgaaacctgtcgatgatgggagagttgggaaacgaaaggctgctgctgctccagttgataagagtagcaaaggaaaggccaagcagacaaagaaggccaagaaagaccccaacaagcctaagaggccacctagtgcctttttcgtgttccttggtcagttcagggaagagttcaagaaaaagaaccctaatgtgaaaggggtagcagctgttggaaaagctggaggagaaaagtggagatccctgtctgatgctgaaaaagctccatatgaagctgagtctgcaaaagcaaagactgagtatgaaaagcagctgaaaatctatgacaaaaagcagagtgcacctgatgatggtgatgaagagtcagagaggtcaagatctgaagtgcatgatgaagacgatgaggctagtggggaggtagtcctatatatactacttttgcttggactttggttcttctttcttctcatggcaataccctttattttagtcatgagaagcgcataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000785 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003700 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006325 GO:0006333 GO:0006355 GO:0006996 GO:0008150 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0030527 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051276 GO:0060255 GO:0065007 GO:0071840 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03410 ko04140 ko04217 map03410 map04140 map04217

Pfam Domains

Protein Families

HMG_box

Protein Analysis

185

Amino Acids

20.37

Weight (kDa)

9.66

Isoelectric Point (pI)

44.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001626)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51880 AT3G51880 AT3G51880 AT3G51880 AT3G51880
fragaria_vesca	FvH4_6g11530 FvH4_6g11530 FvH4_6g11530 FvH4_6g11530 FvH4_7g24360 FvH4_7g24360 FvH4_7g24360
malus_domestica	MD01G1132900.v1.1 MD07G1220600.v1.1
prunus_persica	Prupe.2G249000_v2.0.a1 Prupe.2G249000_v2.0.a1 Prupe.6G276300_v2.0.a1 Prupe.6G276300_v2.0.a1 Prupe.6G276300_v2.0.a1 Prupe.6G276300_v2.0.a1
pyrus_communis	pycom01g16950 pycom07g19960
rosa_chinensis	RchiOBHm_Chr1g0370021 RchiOBHm_Chr3g0463231
rosa_laevigata	RLG00000024799
rosa_multiflora	Rmu_co8427781.1_g000001 Rmu_sc0005056.1_g000014 Rmu_sc0008079.1_g000019 Rmu_sc0022743.1_g000005 Rmu_sc0022743.1_g000006
rosa_roxburghii	Rroxscaffold_4G00286860 Rroxscaffold_4G00287170 Rroxscaffold_6G00416770
rosa_rugosa	Rorug01G0353500 Rorug03G0062700 Rorug03G0062700 Rorug03G0062700 Rorug03G0062800 Rorug03G0062800
rosa_samantha	Rh1AG362200 Rh1BG325400 Rh1CG338700 Rh1DG355900 Rh3AG120800 Rh3BG125300 Rh3CG127300 Rh3DG126500
rosa_wichuraiana	Rw1G031870 Rw3G010260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	40
AclWI	GGATC	1 cut(s)	287
AcuI	CTGAAG	1 cut(s)	455
AdeI	CACNNNGTG	1 cut(s)	187
AfiI	CCNNNNNNNGG	1 cut(s)	403
AgsI	TTSAA	1 cut(s)	228
AluBI	AGCT	5 cut(s)	262, 274, 316, 328, 366
AluI	AGCT	5 cut(s)	262, 274, 316, 328, 366
Alw21I	GWGCWC	1 cut(s)	396
Alw44I	GTGCAC	1 cut(s)	392
AlwI	GGATC	1 cut(s)	287
AoxI	GGCC	3 cut(s)	131, 149, 178
ApaLI	GTGCAC	1 cut(s)	392
ApeKI	GCWGC	6 cut(s)	25, 94, 97, 100, 259, 363
AspLEI	GCGC	1 cut(s)	556
AsuHPI	GGTGA	1 cut(s)	418
BaeGI	GKGCMC	1 cut(s)	396
BanII	GRGCYC	1 cut(s)	54
BbsI	GAAGAC	1 cut(s)	455
Bbv12I	GWGCWC	1 cut(s)	396
BbvI	GCAGC	6 cut(s)	12, 81, 84, 87, 271, 375
BccI	CCATC	2 cut(s)	64, 397
BfaI	CTAG	2 cut(s)	185, 461
BglI	GCCNNNNNGGC	1 cut(s)	177
BglII	AGATCT	1 cut(s)	430
BisI	GCNGC	6 cut(s)	26, 95, 98, 101, 260, 364
BlsI	GCNGC	6 cut(s)	27, 96, 99, 102, 261, 365
BmsI	GCATC	1 cut(s)	294
BpiI	GAAGAC	1 cut(s)	455
BpmI	CTGGAG	2 cut(s)	89, 296
Bpu10I	CCTNAGC	1 cut(s)	35
BsaJI	CCNNGG	2 cut(s)	29, 204
Bsc4I	CCNNNNNNNGG	1 cut(s)	403
Bse1I	ACTGG	1 cut(s)	106
BseDI	CCNNGG	2 cut(s)	29, 204
BseLI	CCNNNNNNNGG	1 cut(s)	403
BseMII	CTCAG	2 cut(s)	320, 341
BseNI	ACTGG	1 cut(s)	106
BseRI	GAGGAG	1 cut(s)	293
BseSI	GKGCMC	1 cut(s)	396
BseXI	GCAGC	6 cut(s)	12, 81, 84, 87, 271, 375
BshFI	GGCC	3 cut(s)	133, 151, 180
BsiHKAI	GWGCWC	1 cut(s)	396
BslI	CCNNNNNNNGG	1 cut(s)	403
BsnI	GGCC	3 cut(s)	133, 151, 180
Bsp1286I	GDGCHC	2 cut(s)	54, 396
Bsp143I	GATC	2 cut(s)	292, 430
BspACI	CCGC	1 cut(s)	40
BspANI	GGCC	3 cut(s)	133, 151, 180
BspCNI	CTCAG	2 cut(s)	321, 342
BspHI	TCATGA	1 cut(s)	545
BspPI	GGATC	1 cut(s)	287
BsrI	ACTGG	1 cut(s)	106
BssECI	CCNNGG	2 cut(s)	29, 204
BssMI	GATC	2 cut(s)	292, 430
BssT1I	CCWWGG	2 cut(s)	29, 204
Bst6I	CTCTTC	2 cut(s)	215, 407
BstDEI	CTNAG	4 cut(s)	35, 173, 329, 350
BstHHI	GCGC	1 cut(s)	556
BstKTI	GATC	2 cut(s)	295, 433
BstMBI	GATC	2 cut(s)	292, 430
BstMWI	GCNNNNNNNGC	5 cut(s)	31, 100, 177, 313, 334
BstSLI	GKGCMC	1 cut(s)	396
BstV1I	GCAGC	6 cut(s)	12, 81, 84, 87, 271, 375
BstV2I	GAAGAC	1 cut(s)	455
BstX2I	RGATCY	2 cut(s)	292, 430
BstYI	RGATCY	2 cut(s)	292, 430
BsuRI	GGCC	3 cut(s)	133, 151, 180
CciI	TCATGA	1 cut(s)	545
CfoI	GCGC	1 cut(s)	556
CviAII	CATG	3 cut(s)	442, 522, 546
DdeI	CTNAG	4 cut(s)	35, 173, 329, 350
DpnI	GATC	2 cut(s)	294, 432
DpnII	GATC	2 cut(s)	292, 430
DraIII	CACNNNGTG	1 cut(s)	187
Eam1104I	CTCTTC	2 cut(s)	215, 407
EarI	CTCTTC	2 cut(s)	215, 407
Eco130I	CCWWGG	2 cut(s)	29, 204
Eco24I	GRGCYC	1 cut(s)	54
Eco57I	CTGAAG	1 cut(s)	455
EcoT14I	CCWWGG	2 cut(s)	29, 204
EcoT38I	GRGCYC	1 cut(s)	54
ErhI	CCWWGG	2 cut(s)	29, 204
FaeI	CATG	3 cut(s)	445, 525, 549
FatI	CATG	3 cut(s)	441, 521, 545
FauI	CCCGC	1 cut(s)	33
FauNDI	CATATG	1 cut(s)	321
Fnu4HI	GCNGC	6 cut(s)	26, 95, 98, 101, 260, 364
FriOI	GRGCYC	1 cut(s)	54
Fsp4HI	GCNGC	6 cut(s)	26, 95, 98, 101, 260, 364
FspBI	CTAG	2 cut(s)	185, 461
GlaI	GCGC	1 cut(s)	555
GluI	GCNGC	6 cut(s)	26, 95, 98, 101, 260, 364
GsuI	CTGGAG	2 cut(s)	89, 296
HaeIII	GGCC	3 cut(s)	133, 151, 180
HhaI	GCGC	1 cut(s)	556
Hin1II	CATG	3 cut(s)	445, 525, 549
Hin6I	GCGC	1 cut(s)	554
HinP1I	GCGC	1 cut(s)	554
HinfI	GANTC	2 cut(s)	331, 415
HphI	GGTGA	1 cut(s)	418
Hpy166II	GTNNAC	1 cut(s)	394
Hpy188I	TCNGA	4 cut(s)	13, 303, 420, 435
Hpy188III	TCNNGA	3 cut(s)	228, 428, 546
Hpy8I	GTNNAC	1 cut(s)	394
HpyAV	CCTTC	1 cut(s)	141
HpyCH4V	TGCA	3 cut(s)	337, 394, 441
HpyF10VI	GCNNNNNNNGC	5 cut(s)	31, 100, 177, 313, 334
HpyF3I	CTNAG	4 cut(s)	35, 173, 329, 350
Hsp92II	CATG	3 cut(s)	445, 525, 549
HspAI	GCGC	1 cut(s)	554
Kzo9I	GATC	2 cut(s)	292, 430
LmnI	GCTCC	3 cut(s)	43, 108, 321
LpnPI	CCDG	7 cut(s)	67, 74, 119, 201, 260, 310, 410
Lsp1109I	GCAGC	6 cut(s)	12, 81, 84, 87, 271, 375
LweI	GCATC	1 cut(s)	294
MaeI	CTAG	2 cut(s)	185, 461
MalI	GATC	2 cut(s)	294, 432
MboI	GATC	2 cut(s)	292, 430
MboII	GAAGA	5 cut(s)	232, 424, 460, 501, 508
MflI	RGATCY	2 cut(s)	292, 430
MhlI	GDGCHC	2 cut(s)	54, 396
MlyI	GAGTC	2 cut(s)	340, 424
MmeI	TCCRAC	1 cut(s)	246
MnlI	CCTC	6 cut(s)	14, 170, 271, 416, 450, 462
MspA1I	CMGCKG	2 cut(s)	262, 366
MwoI	GCNNNNNNNGC	5 cut(s)	31, 100, 177, 313, 334
NdeI	CATATG	1 cut(s)	321
NdeII	GATC	2 cut(s)	292, 430
NlaIII	CATG	3 cut(s)	445, 525, 549
PagI	TCATGA	1 cut(s)	545
PkrI	GCNGC	6 cut(s)	27, 96, 99, 102, 261, 365
PleI	GAGTC	2 cut(s)	339, 423
PpsI	GAGTC	2 cut(s)	339, 423
PsuI	RGATCY	2 cut(s)	292, 430
PvuII	CAGCTG	2 cut(s)	262, 366
SatI	GCNGC	6 cut(s)	26, 95, 98, 101, 260, 364
Sau3AI	GATC	2 cut(s)	292, 430
SchI	GAGTC	2 cut(s)	340, 424
SduI	GDGCHC	2 cut(s)	54, 396
SfaNI	GCATC	1 cut(s)	294
SsiI	CCGC	1 cut(s)	40
SspMI	CTAG	2 cut(s)	185, 461
StyI	CCWWGG	2 cut(s)	29, 204
TaqI	TCGA	1 cut(s)	65
TseI	GCWGC	6 cut(s)	25, 94, 97, 100, 259, 363
TspDTI	ATGAA	4 cut(s)	338, 371, 425, 461
VneI	GTGCAC	1 cut(s)	392
XspI	CTAG	2 cut(s)	185, 461

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.