AT3G52030

A Receptor for Ubiquitination Targets

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0004801
Physical Location & Seq
Forward (+)
19301778 .. 19304253
2476 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G52030.1

Sequence Viewer

Length: 1365 bp
ATGGGGAGAACAGAGACCGGCGACGAATCGTCGGCGAGAAAGATGCGACGTAAAGTACCCACGTCGATCGAATCTCTAGACGCCGATATACTGTGCATCATCTTCTCTTTTCTTGATTTGTTCGACCTCGTTCATTGTACCGTCGTCTGCAATTCCTGGAATGCTGTTATCAAAAGGCTGAAGCTGCTACAAGCTTCTTGCCGGAAGATGCACCATCTCGGTTCCGACTCTCCCAGTAGCTCCACGTCACTTGATCGTCCAGCTGAGATAGATGTGGAGGATTTTGCGATGAAGCATCACAAGATGGCATTGTTAAGGGGTCGAATCGAAATTGAGCGATGGGAAGCTCATTCTCACCGGGTTTCTCAGTGTCGAATGAAGAAAGGTTTGCTTCTTACTGGTGTCGGTGATAAGGTTATGCGCCTCTGGTCATTAAAAAGCTACAAATGCATGGAAGAATACTCCCTTCCTGATGCTTCTTCCTTGATTGACTTCGATTTTGATGAGAGTAAGAAATTGGAAGTTGTATCTCTAGCATGGGAGTATTTTGATTCTGTTGTTGTTGTTGTTGTTGAGATTGTTGGCTTGGTTGGTACCCGCATTAGCATATGGAGGAGAAATGGACAAAGAAGCATTTTTCCATCTCGTGCAGGCACCTTTCCTAAAGGCCTTTGTATGCGTTACATTGACCCAGAAGCTGTAGTTGGATGCGAGGATGGAACAGCTCGTGTATTTGATATGTACAGTAAGACATGTTCACAGATCATTAGGACTCAGGGTGGGCCAATAACATGCTTATCTCTAAGCGATAATCAACTATTTCTTAGTGGGTCGTCACTCGGGAGAGTAACAGTATCTGACCCTTTGATGGATCAACCAGTGGCCACTCTTAAATCCACGATAACTGCAGGAGGTATACAGACAATCTGTTTTAACCAAGGCACTAATCTCGCCTTCATTGGAACAACTGGTGGATATGTTTCATGCTGGGACCTCAGGAAAATGGATAGATTGTGGGAAAAACGAGTGAGTCCTAATGTCGTGTACTCAATACAACAGCTAAGGAATGACACATCGGTTATGGTAGCTGGTGGAATAGACGGTGTGCTGCGTATGATTGATCAGAAGAGTGGAAGGGTTTTATCTAGAGTTATAATGGACGATAAATTCTCCACAACATCAACAAGGAACAACCAAGTGGTGATAGAGAAAAGAAGAGGAAAAAGAGTTTCTCAAGACATGGAGATTGATAAAATCGAAAGGAAAGTTCGGCCTCAAATCAGTTGCATAGCAATGGGGATGAAGAAGATGGTAACGGCTCACAATGGTAAATGCATAAGTGTATGGAAGTTCAATCTCTCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04120 map04120
Pfam Domains
Protein Families
F-box F-box-like WD40

Protein Analysis

454

Amino Acids

50.97

Weight (kDa)

9.17

Isoelectric Point (pI)

50.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 24 - 63 1e-07 F-box domain
Beta-prop_ACSF4 PF13570 225 - 414 5.2e-08 Beta-alanine-activating enzyme, beta-propeller
Beta-prop_WDR3_1st PF25173 233 - 372 2.2e-08 WDR3 first beta-propeller domain
WD40_Prp19 PF24814 233 - 336 3.2e-06 Prp19 WD40 domain
Beta-prop_THOC3 PF25174 234 - 379 2.5e-09 THOC3 beta-propeller domain
WD40_CDC20-Fz PF24807 234 - 384 4.1e-08 CDC20/Fizzy WD40 domain
Beta-prop_WDR36-Utp21_1st PF25171 234 - 371 4e-06 WDR36/Utp21 first beta-propeller
Beta-prop_WDR5 PF25175 237 - 393 3.4e-08 WDR5 beta-propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1154
Acc65I GGTACC 1 cut(s) 593
AccB1I GGYRCC 2 cut(s) 593, 653
AccI GTMKAC 1 cut(s) 916
AciI CCGC 1 cut(s) 598
AclWI GGATC 1 cut(s) 879
AcoI YGGCCR 1 cut(s) 882
AcsI RAATTY 1 cut(s) 1166
AcuI CTGAAG 1 cut(s) 200
AcyI GRCGYC 1 cut(s) 81
AfaI GTAC 5 cut(s) 57, 139, 595, 743, 1046
AfiI CCNNNNNNNGG 1 cut(s) 868
AflIII ACRYGT 1 cut(s) 752
AgsI TTSAA 1 cut(s) 1354
AhdI GACNNNNNGTC 1 cut(s) 28
AjiI CACGTC 2 cut(s) 63, 246
AjnI CCWGG 1 cut(s) 155
AjuI GAANNNNNNNTTGG 2 cut(s) 687, 719
Alw26I GTCTC 1 cut(s) 8
AlwI GGATC 1 cut(s) 879
AlwNI CAGNNNCTG 2 cut(s) 698, 857
Ama87I CYCGRG 1 cut(s) 839
AoxI GGCC 4 cut(s) 667, 782, 882, 1271
ApeKI GCWGC 2 cut(s) 184, 1108
ApoI RAATTY 1 cut(s) 1166
ArsI GACNNNNNNTTYG 2 cut(s) 482, 514
Asp718I GGTACC 1 cut(s) 593
AspLEI GCGC 1 cut(s) 423
AspS9I GGNCC 2 cut(s) 782, 991
AsuC2I CCSGG 1 cut(s) 359
AsuHPI GGTGA 3 cut(s) 347, 419, 1213
AvaI CYCGRG 1 cut(s) 839
AvaII GGWCC 1 cut(s) 991
AxyI CCTNAGG 1 cut(s) 995
BalI TGGCCA 1 cut(s) 884
BanI GGYRCC 2 cut(s) 593, 653
BauI CACGAG 2 cut(s) 645, 726
BbvI GCAGC 2 cut(s) 171, 1095
BccI CCATC 7 cut(s) 222, 298, 333, 649, 710, 862, 1303
BceAI ACGGC 1 cut(s) 1332
BcgI CGANNNNNNTGC 4 cut(s) 25, 59, 931, 965
BciT130I CCWGG 1 cut(s) 157
BclI TGATCA 1 cut(s) 1120
BcnI CCSGG 1 cut(s) 359
BcoDI GTCTC 1 cut(s) 8
BfaI CTAG 3 cut(s) 77, 533, 1146
BfmI CTRYAG 2 cut(s) 699, 906
BisI GCNGC 2 cut(s) 185, 1109
BlsI GCNGC 2 cut(s) 186, 1110
Bme1390I CCNGG 2 cut(s) 157, 359
Bme18I GGWCC 1 cut(s) 991
BmeRI GACNNNNNGTC 1 cut(s) 28
BmeT110I CYCGRG 1 cut(s) 839
BmgBI CACGTC 2 cut(s) 63, 246
BmgT120I GGNCC 2 cut(s) 782, 991
BmiI GGNNCC 4 cut(s) 223, 595, 655, 992
BmrFI CCNGG 2 cut(s) 157, 359
BmrI ACTGGG 1 cut(s) 228
BmsI GCATC 6 cut(s) 33, 105, 198, 304, 463, 698
BmuI ACTGGG 1 cut(s) 228
Bpu10I CCTNAGC 1 cut(s) 1061
BpuEI CTTGAG 1 cut(s) 1218
BpuMI CCSGG 1 cut(s) 359
BsaHI GRCGYC 1 cut(s) 81
BsaI GGTCTC 1 cut(s) 8
BsaJI CCNNGG 1 cut(s) 937
Bsc4I CCNNNNNNNGG 1 cut(s) 868
Bse118I RCCGGY 1 cut(s) 17
Bse1I ACTGG 4 cut(s) 234, 403, 878, 973
Bse21I CCTNAGG 1 cut(s) 995
Bse3DI GCAATG 1 cut(s) 1299
BseBI CCWGG 1 cut(s) 157
BseDI CCNNGG 1 cut(s) 937
BseGI GGATG 3 cut(s) 713, 721, 1305
BseLI CCNNNNNNNGG 1 cut(s) 868
BseMI GCAATG 1 cut(s) 1299
BseMII CTCAG 4 cut(s) 255, 380, 788, 1009
BseNI ACTGG 4 cut(s) 234, 403, 878, 973
BseRI GAGGAG 1 cut(s) 628
BseXI GCAGC 2 cut(s) 171, 1095
BseYI CCCAGC 1 cut(s) 987
BsgI GTGCAG 1 cut(s) 669
Bsh1285I CGRYCG 1 cut(s) 69
BshFI GGCC 4 cut(s) 669, 784, 884, 1273
BshNI GGYRCC 2 cut(s) 593, 653
BsiEI CGRYCG 1 cut(s) 69
BsiHKCI CYCGRG 1 cut(s) 839
BsiSI CCGG 3 cut(s) 18, 202, 358
BslFI GGGAC 1 cut(s) 1004
BslI CCNNNNNNNGG 1 cut(s) 868
BsmAI GTCTC 1 cut(s) 8
BsmFI GGGAC 1 cut(s) 1004
BsmI GAATGC 1 cut(s) 166
BsnI GGCC 4 cut(s) 669, 784, 884, 1273
Bso31I GGTCTC 1 cut(s) 8
BsoBI CYCGRG 1 cut(s) 839
Bsp1407I TGTACA 1 cut(s) 741
Bsp143I GATC 5 cut(s) 66, 253, 762, 871, 1120
BspACI CCGC 1 cut(s) 598
BspANI GGCC 4 cut(s) 669, 784, 884, 1273
BspCNI CTCAG 4 cut(s) 256, 379, 787, 1008
BspLI GGNNCC 4 cut(s) 223, 595, 655, 992
BspMAI CTGCAG 1 cut(s) 910
BspPI GGATC 1 cut(s) 879
BspT107I GGYRCC 2 cut(s) 593, 653
BspTNI GGTCTC 1 cut(s) 8
BsrDI GCAATG 1 cut(s) 1299
BsrFI RCCGGY 1 cut(s) 17
BsrGI TGTACA 1 cut(s) 741
BsrI ACTGG 4 cut(s) 234, 403, 878, 973
BssAI RCCGGY 1 cut(s) 17
BssECI CCNNGG 1 cut(s) 937
BssMI GATC 5 cut(s) 66, 253, 762, 871, 1120
BssNAI GTATAC 1 cut(s) 917
BssNI GRCGYC 1 cut(s) 81
BssSI CACGAG 2 cut(s) 645, 726
BssT1I CCWWGG 1 cut(s) 937
Bst1107I GTATAC 1 cut(s) 917
Bst2BI CACGAG 2 cut(s) 645, 726
Bst2UI CCWGG 1 cut(s) 157
Bst4CI ACNGT 5 cut(s) 93, 142, 746, 853, 1103
Bst6I CTCTTC 2 cut(s) 1121, 1210
BstACI GRCGYC 1 cut(s) 81
BstAUI TGTACA 1 cut(s) 741
BstC8I GCNNGC 1 cut(s) 652
BstDEI CTNAG 7 cut(s) 264, 366, 774, 803, 824, 995, 1061
BstF5I GGATG 3 cut(s) 713, 721, 1305
BstHHI GCGC 1 cut(s) 423
BstKTI GATC 5 cut(s) 69, 256, 765, 874, 1123
BstMAI GTCTC 1 cut(s) 8
BstMBI GATC 5 cut(s) 66, 253, 762, 871, 1120
BstMCI CGRYCG 1 cut(s) 69
BstMWI GCNNNNNNNGC 2 cut(s) 184, 447
BstNI CCWGG 1 cut(s) 157
BstNSI RCATGY 2 cut(s) 756, 795
BstSCI CCNGG 2 cut(s) 155, 357
BstSFI CTRYAG 2 cut(s) 699, 906
BstV1I GCAGC 2 cut(s) 171, 1095
BstZ17I GTATAC 1 cut(s) 917
Bsu36I CCTNAGG 1 cut(s) 995
BsuRI GGCC 4 cut(s) 669, 784, 884, 1273
BtgZI GCGATG 2 cut(s) 302, 352
BtrI CACGTC 2 cut(s) 63, 246
BtsCI GGATG 3 cut(s) 713, 721, 1305
BtsIMutI CAGTG 2 cut(s) 374, 885
Cac8I GCNNGC 1 cut(s) 652
CaiI CAGNNNCTG 2 cut(s) 698, 857
CfoI GCGC 1 cut(s) 423
Cfr10I RCCGGY 1 cut(s) 17
Cfr13I GGNCC 2 cut(s) 782, 991
CseI GACGC 1 cut(s) 89
Csp6I GTAC 5 cut(s) 56, 138, 594, 742, 1045
CspCI CAANNNNNGTGG 2 cut(s) 232, 267
CviAII CATG 6 cut(s) 451, 537, 753, 792, 984, 1240
CviQI GTAC 5 cut(s) 56, 138, 594, 742, 1045
DdeI CTNAG 7 cut(s) 264, 366, 774, 803, 824, 995, 1061
DpnI GATC 5 cut(s) 68, 255, 764, 873, 1122
DpnII GATC 5 cut(s) 66, 253, 762, 871, 1120
DriI GACNNNNNGTC 1 cut(s) 28
EaeI YGGCCR 1 cut(s) 882
Eam1104I CTCTTC 2 cut(s) 1121, 1210
Eam1105I GACNNNNNGTC 1 cut(s) 28
EarI CTCTTC 2 cut(s) 1121, 1210
Eco130I CCWWGG 1 cut(s) 937
Eco147I AGGCCT 1 cut(s) 669
Eco31I GGTCTC 1 cut(s) 8
Eco47I GGWCC 1 cut(s) 991
Eco57I CTGAAG 1 cut(s) 200
Eco81I CCTNAGG 1 cut(s) 995
Eco88I CYCGRG 1 cut(s) 839
EcoO109I RGGNCCY 1 cut(s) 991
EcoRII CCWGG 1 cut(s) 155
EcoT14I CCWWGG 1 cut(s) 937
EcoT22I ATGCAT 2 cut(s) 452, 1337
ErhI CCWWGG 1 cut(s) 937
FaeI CATG 6 cut(s) 454, 540, 756, 795, 987, 1243
FalI AAGNNNNNCTT 2 cut(s) 375, 407
FaqI GGGAC 1 cut(s) 1004
FatI CATG 6 cut(s) 450, 536, 752, 791, 983, 1239
FauI CCCGC 1 cut(s) 605
FauNDI CATATG 1 cut(s) 608
FbaI TGATCA 1 cut(s) 1120
FblI GTMKAC 1 cut(s) 916
Fnu4HI GCNGC 2 cut(s) 185, 1109
FokI GGATG 3 cut(s) 720, 728, 1312
Fsp4HI GCNGC 2 cut(s) 185, 1109
FspBI CTAG 3 cut(s) 77, 533, 1146
GlaI GCGC 1 cut(s) 422
GluI GCNGC 2 cut(s) 185, 1109
GsaI CCCAGC 1 cut(s) 991
HaeIII GGCC 4 cut(s) 669, 784, 884, 1273
HapII CCGG 3 cut(s) 18, 202, 358
HgaI GACGC 1 cut(s) 89
HhaI GCGC 1 cut(s) 423
Hin1I GRCGYC 1 cut(s) 81
Hin1II CATG 6 cut(s) 454, 540, 756, 795, 987, 1243
Hin6I GCGC 1 cut(s) 421
HinP1I GCGC 1 cut(s) 421
HindIII AAGCTT 1 cut(s) 192
HinfI GANTC 7 cut(s) 26, 71, 227, 324, 551, 772, 1030
HpaII CCGG 3 cut(s) 18, 202, 358
HphI GGTGA 3 cut(s) 347, 419, 1213
Hpy166II GTNNAC 3 cut(s) 758, 917, 1045
Hpy188I TCNGA 3 cut(s) 226, 859, 1125
Hpy188III TCNNGA 7 cut(s) 77, 113, 470, 841, 997, 1146, 1235
Hpy8I GTNNAC 3 cut(s) 758, 917, 1045
Hpy99I CGWCG 5 cut(s) 26, 34, 51, 67, 146
HpyAV CCTTC 3 cut(s) 476, 964, 1128
HpyCH4III ACNGT 5 cut(s) 93, 142, 746, 853, 1103
HpyCH4IV ACGT 3 cut(s) 49, 62, 245
HpyCH4V TGCA 8 cut(s) 96, 150, 211, 450, 650, 908, 1287, 1335
HpyF10VI GCNNNNNNNGC 2 cut(s) 184, 447
HpyF3I CTNAG 7 cut(s) 264, 366, 774, 803, 824, 995, 1061
HpySE526I ACGT 3 cut(s) 49, 62, 245
Hsp92I GRCGYC 1 cut(s) 81
Hsp92II CATG 6 cut(s) 454, 540, 756, 795, 987, 1243
HspAI GCGC 1 cut(s) 421
KpnI GGTACC 1 cut(s) 597
Ksp22I TGATCA 1 cut(s) 1120
Kzo9I GATC 5 cut(s) 66, 253, 762, 871, 1120
LmnI GCTCC 1 cut(s) 245
Lsp1109I GCAGC 2 cut(s) 171, 1095
LweI GCATC 6 cut(s) 33, 105, 198, 304, 463, 698
MaeI CTAG 3 cut(s) 77, 533, 1146
MaeII ACGT 3 cut(s) 49, 62, 245
MaeIII GTNAC 5 cut(s) 246, 680, 834, 847, 1312
MalI GATC 5 cut(s) 68, 255, 764, 873, 1122
MboI GATC 5 cut(s) 66, 253, 762, 871, 1120
MboII GAAGA 9 cut(s) 94, 217, 391, 467, 471, 1138, 1227, 1315, 1318
MlsI TGGCCA 1 cut(s) 884
MluCI AATT 4 cut(s) 151, 330, 515, 1166
MluNI TGGCCA 1 cut(s) 884
MlyI GAGTC 3 cut(s) 221, 766, 1039
MmeI TCCRAC 2 cut(s) 249, 685
MnlI CCTC 9 cut(s) 137, 271, 434, 606, 706, 905, 1004, 1211, 1284
Mox20I TGGCCA 1 cut(s) 884
Mph1103I ATGCAT 2 cut(s) 452, 1337
MscI TGGCCA 1 cut(s) 884
MseI TTAA 4 cut(s) 314, 434, 891, 933
MslI CAYNNNNRTG 1 cut(s) 1292
Msp20I TGGCCA 1 cut(s) 884
MspA1I CMGCKG 1 cut(s) 263
MspI CCGG 3 cut(s) 18, 202, 358
MspR9I CCNGG 2 cut(s) 157, 359
Mva1269I GAATGC 1 cut(s) 166
MvaI CCWGG 1 cut(s) 157
MwoI GCNNNNNNNGC 2 cut(s) 184, 447
NciI CCSGG 1 cut(s) 359
NdeI CATATG 1 cut(s) 608
NdeII GATC 5 cut(s) 66, 253, 762, 871, 1120
NlaIII CATG 6 cut(s) 454, 540, 756, 795, 987, 1243
NlaIV GGNNCC 4 cut(s) 223, 595, 655, 992
NmuCI GTSAC 2 cut(s) 246, 834
NsiI ATGCAT 2 cut(s) 452, 1337
NspI RCATGY 2 cut(s) 756, 795
PceI AGGCCT 1 cut(s) 669
PciI ACATGT 1 cut(s) 752
PctI GAATGC 1 cut(s) 166
PfeI GAWTC 4 cut(s) 26, 71, 324, 551
PfoI TCCNGGA 1 cut(s) 155
PkrI GCNGC 2 cut(s) 186, 1110
Ple19I CGATCG 1 cut(s) 69
PleI GAGTC 3 cut(s) 221, 766, 1038
PpsI GAGTC 3 cut(s) 221, 766, 1038
PpuMI RGGWCCY 1 cut(s) 991
PscI ACATGT 1 cut(s) 752
PsiI TTATAA 1 cut(s) 1154
Psp5II RGGWCCY 1 cut(s) 991
Psp6I CCWGG 1 cut(s) 155
PspFI CCCAGC 1 cut(s) 987
PspGI CCWGG 1 cut(s) 155
PspN4I GGNNCC 4 cut(s) 223, 595, 655, 992
PspPI GGNCC 2 cut(s) 782, 991
PspPPI RGGWCCY 1 cut(s) 991
PsrI GAACNNNNNNTAC 2 cut(s) 739, 771
PstI CTGCAG 1 cut(s) 910
PstNI CAGNNNCTG 2 cut(s) 698, 857
PvuI CGATCG 1 cut(s) 69
PvuII CAGCTG 1 cut(s) 263
RsaI GTAC 5 cut(s) 57, 139, 595, 743, 1046
RsaNI GTAC 5 cut(s) 56, 138, 594, 742, 1045
RseI CAYNNNNRTG 1 cut(s) 1292
SaqAI TTAA 4 cut(s) 314, 434, 891, 933
SatI GCNGC 2 cut(s) 185, 1109
Sau3AI GATC 5 cut(s) 66, 253, 762, 871, 1120
Sau96I GGNCC 2 cut(s) 782, 991
SchI GAGTC 3 cut(s) 221, 766, 1039
ScrFI CCNGG 2 cut(s) 157, 359
SfaNI GCATC 6 cut(s) 33, 105, 198, 304, 463, 698
SfcI CTRYAG 2 cut(s) 699, 906
SinI GGWCC 1 cut(s) 991
SmiMI CAYNNNNRTG 1 cut(s) 1292
SmlI CTYRAG 1 cut(s) 1233
SmoI CTYRAG 1 cut(s) 1233
Sse9I AATT 4 cut(s) 151, 330, 515, 1166
SseBI AGGCCT 1 cut(s) 669
SsiI CCGC 1 cut(s) 598
SspMI CTAG 3 cut(s) 77, 533, 1146
StuI AGGCCT 1 cut(s) 669
StyD4I CCNGG 2 cut(s) 155, 357
StyI CCWWGG 1 cut(s) 937
TaaI ACNGT 5 cut(s) 93, 142, 746, 853, 1103
TaiI ACGT 3 cut(s) 52, 65, 248
TaqI TCGA 8 cut(s) 65, 69, 123, 322, 327, 373, 495, 1257
TasI AATT 4 cut(s) 151, 330, 515, 1166
TatI WGTACW 2 cut(s) 741, 1044
TfiI GAWTC 4 cut(s) 26, 71, 324, 551
Tru1I TTAA 4 cut(s) 314, 434, 891, 933
Tru9I TTAA 4 cut(s) 314, 434, 891, 933
TscAI CASTG 2 cut(s) 374, 885
TseFI GTSAC 2 cut(s) 246, 834
TseI GCWGC 2 cut(s) 184, 1108
Tsp45I GTSAC 2 cut(s) 246, 834
TspDTI ATGAA 6 cut(s) 122, 305, 392, 946, 972, 1316
TspRI CASTG 2 cut(s) 374, 885
VpaK11BI GGWCC 1 cut(s) 991
XapI RAATTY 1 cut(s) 1166
XbaI TCTAGA 2 cut(s) 76, 1145
XceI RCATGY 2 cut(s) 756, 795
XmiI GTMKAC 1 cut(s) 916
XspI CTAG 3 cut(s) 77, 533, 1146
Zsp2I ATGCAT 2 cut(s) 452, 1337
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.