Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002662.1

Orthogroup ID

OG0004801

Physical Location & Seq

Genomic Coordinates Forward (+)

46601 .. 50550

Gene Structure 3950 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002662.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 984 bp

atgggtttgcttcttactggcattggtgataaggttatgcgcctttggtcattggaaagctataaatgtgtgggagaatatcccattccagacaaagtccctttagttgactttgattttgatgagagcaagattgttggtttggtcggcagtcgtatatgcatatggaggcggaatgggataagaagtatatttccctcgcgtgagggcacctttccaaagggcttatgcatgcgttactgcgatccggatgctgtggttggctgtgtggatgggacagctcgtgtatttgacatgtacagtcaacaatgttctcaaatcgttaaaatgcatgctggtccagtgacatgcttatgtttgagtgatgatcagttgatacttagcggttcttctcttggcagtatcacggtgtccagacttttatctgatcagctggttgcagaattaagatcgacacattccacagacataaggactttgtgttacaacccctcatctcaccggctgttcgctggatcaactgatggatatgtattttgttgggaccttaggacaaggagatgtttatgggagacacgagtgagtccaaatgtggtatattcaatgcaacacctgagaaatgatgcatcaagcttggtggttggtggaatagatggtgtgctacgtatactgaatcagaacacagttggaagtggcacagtccaaagaatgacaggacgaaggctttcacaaaatgcctcaattgatagcattcctagaagcagtcgacctcccatcacttgcttagtggtcgggatgaagaaggttatcaccacacacaataataacttgaaatcaagcacctggagcaaaactccagtctcagagaaagatggtttaccagtttggtacttcacaacacctggggttaagcaggatgttcattttcttgctttccaacaccaggcattcttgattagatgcccaatatgcaatctgttttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

F-box F-box-like WD40

Protein Analysis

327

Amino Acids

36.39

Weight (kDa)

8.93

Isoelectric Point (pI)

42.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004801)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G52030 AT3G52030
fragaria_vesca	FvH4_2g17910 FvH4_7g01770 FvH4_7g01770 FvH4_7g01770 FvH4_7g01770 FvH4_7g01770 FvH4_7g01770 FvH4_7g01770 FvH4_7g01770 FvH4_7g01770 FvH4_7g01770 FvH4_7g01770 FvH4_7g01770
malus_domestica	MD07G1016900.v1.1 MD07G1023200.v1.1
prunus_persica	Prupe.2G024000_v2.0.a1
pyrus_communis	pycom07g01760
rosa_chinensis	RchiOBHm_Chr1g0318361
rosa_laevigata	RLG00000030542
rosa_multiflora	Rmu_sc0002662.1_g000010 Rmu_sc0003936.1_g000037
rosa_roxburghii	Rroxscaffold_4G00329280
rosa_rugosa	Rorug01G0020800 Rorug01G0020900
rosa_samantha	Rh1AG032900 Rh1BG028800 Rh1CG031300 Rh1DG038200
rosa_wichuraiana	Rw1G002640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	209
AccI	GTMKAC	2 cut(s)	667, 766
AccII	CGCG	1 cut(s)	202
AccIII	TCCGGA	1 cut(s)	247
AciI	CCGC	2 cut(s)	172, 384
AclWI	GGATC	2 cut(s)	239, 523
AfaI	GTAC	2 cut(s)	299, 890
AfiI	CCNNNNNNNGG	1 cut(s)	943
AflIII	ACRYGT	1 cut(s)	294
AgsI	TTSAA	2 cut(s)	603, 832
AjnI	CCWGG	3 cut(s)	842, 901, 942
AluBI	AGCT	4 cut(s)	60, 281, 433, 633
AluI	AGCT	4 cut(s)	60, 281, 433, 633
Alw26I	GTCTC	2 cut(s)	566, 865
AlwI	GGATC	2 cut(s)	239, 523
Aor13HI	TCCGGA	1 cut(s)	247
ArsI	GACNNNNNNTTYG	4 cut(s)	101, 133, 843, 875
Asp700I	GAANNNNTTC	1 cut(s)	724
AspLEI	GCGC	1 cut(s)	42
AspS9I	GGNCC	2 cut(s)	338, 544
AsuHPI	GGTGA	3 cut(s)	38, 491, 802
AvaII	GGWCC	2 cut(s)	338, 544
AxyI	CCTNAGG	1 cut(s)	548
BaeGI	GKGCMC	1 cut(s)	212
BanI	GGYRCC	1 cut(s)	209
BauI	CACGAG	2 cut(s)	282, 576
BccI	CCATC	5 cut(s)	266, 518, 647, 782, 866
BcgI	CGANNNNNNTGC	2 cut(s)	233, 267
BciT130I	CCWGG	3 cut(s)	844, 903, 944
BclI	TGATCA	2 cut(s)	367, 427
BcoDI	GTCTC	2 cut(s)	566, 865
BfaI	CTAG	1 cut(s)	756
Bme1390I	CCNGG	3 cut(s)	844, 903, 944
Bme18I	GGWCC	2 cut(s)	338, 544
BmgT120I	GGNCC	2 cut(s)	338, 544
BmiI	GGNNCC	2 cut(s)	211, 545
BmrFI	CCNGG	3 cut(s)	844, 903, 944
BmsI	GCATC	4 cut(s)	241, 613, 635, 950
BplI	GAGNNNNNCTC	2 cut(s)	838, 870
BpmI	CTGGAG	2 cut(s)	840, 865
BsaAI	YACGTR	1 cut(s)	665
BsaJI	CCNNGG	1 cut(s)	902
BsaWI	WCCGGW	1 cut(s)	247
Bsc4I	CCNNNNNNNGG	1 cut(s)	943
Bse118I	RCCGGY	1 cut(s)	501
Bse1I	ACTGG	4 cut(s)	22, 341, 857, 881
Bse21I	CCTNAGG	1 cut(s)	548
BseAI	TCCGGA	1 cut(s)	247
BseBI	CCWGG	3 cut(s)	844, 903, 944
BseDI	CCNNGG	1 cut(s)	902
BseGI	GGATG	4 cut(s)	256, 277, 801, 922
BseLI	CCNNNNNNNGG	1 cut(s)	943
BseMII	CTCAG	2 cut(s)	605, 876
BseNI	ACTGG	4 cut(s)	22, 341, 857, 881
BseSI	GKGCMC	1 cut(s)	212
Bsh1236I	CGCG	1 cut(s)	202
BshNI	GGYRCC	1 cut(s)	209
BsiSI	CCGG	2 cut(s)	248, 502
BslFI	GGGAC	3 cut(s)	83, 289, 557
BslI	CCNNNNNNNGG	1 cut(s)	943
BsmAI	GTCTC	2 cut(s)	566, 865
BsmFI	GGGAC	3 cut(s)	83, 289, 557
BsmI	GAATGC	2 cut(s)	750, 947
Bsp1286I	GDGCHC	1 cut(s)	212
Bsp13I	TCCGGA	1 cut(s)	247
Bsp1407I	TGTACA	1 cut(s)	297
Bsp143I	GATC	5 cut(s)	244, 367, 427, 449, 515
BspACI	CCGC	2 cut(s)	172, 384
BspCNI	CTCAG	2 cut(s)	606, 875
BspEI	TCCGGA	1 cut(s)	247
BspFNI	CGCG	1 cut(s)	202
BspLI	GGNNCC	2 cut(s)	211, 545
BspPI	GGATC	2 cut(s)	239, 523
BspT107I	GGYRCC	1 cut(s)	209
BsrFI	RCCGGY	1 cut(s)	501
BsrGI	TGTACA	1 cut(s)	297
BsrI	ACTGG	4 cut(s)	22, 341, 857, 881
BssAI	RCCGGY	1 cut(s)	501
BssECI	CCNNGG	1 cut(s)	902
BssMI	GATC	5 cut(s)	244, 367, 427, 449, 515
BssNAI	GTATAC	1 cut(s)	668
BssSI	CACGAG	2 cut(s)	282, 576
Bst1107I	GTATAC	1 cut(s)	668
Bst2BI	CACGAG	2 cut(s)	282, 576
Bst2UI	CCWGG	3 cut(s)	844, 903, 944
Bst4CI	ACNGT	4 cut(s)	302, 409, 685, 700
BstAUI	TGTACA	1 cut(s)	297
BstBAI	YACGTR	1 cut(s)	665
BstC8I	GCNNGC	2 cut(s)	233, 333
BstDEI	CTNAG	5 cut(s)	380, 548, 614, 784, 862
BstF5I	GGATG	4 cut(s)	256, 277, 801, 922
BstFNI	CGCG	1 cut(s)	202
BstHHI	GCGC	1 cut(s)	42
BstKTI	GATC	5 cut(s)	247, 370, 430, 452, 518
BstMAI	GTCTC	2 cut(s)	566, 865
BstMBI	GATC	5 cut(s)	244, 367, 427, 449, 515
BstMWI	GCNNNNNNNGC	2 cut(s)	846, 969
BstNI	CCWGG	3 cut(s)	844, 903, 944
BstNSI	RCATGY	4 cut(s)	235, 298, 335, 351
BstSCI	CCNGG	3 cut(s)	842, 901, 942
BstSLI	GKGCMC	1 cut(s)	212
BstSNI	TACGTA	1 cut(s)	665
BstUI	CGCG	1 cut(s)	202
BstZ17I	GTATAC	1 cut(s)	668
Bsu36I	CCTNAGG	1 cut(s)	548
BtsCI	GGATG	4 cut(s)	256, 277, 801, 922
BtsIMutI	CAGTG	1 cut(s)	348
Cac8I	GCNNGC	2 cut(s)	233, 333
CfoI	GCGC	1 cut(s)	42
Cfr10I	RCCGGY	1 cut(s)	501
Cfr13I	GGNCC	2 cut(s)	338, 544
Csp6I	GTAC	2 cut(s)	298, 889
CspCI	CAANNNNNGTGG	2 cut(s)	618, 653
CviAII	CATG	4 cut(s)	232, 295, 332, 348
CviJI	RGCY	8 cut(s)	60, 225, 264, 281, 433, 505, 633, 724
CviKI_1	RGCY	8 cut(s)	60, 225, 264, 281, 433, 505, 633, 724
CviQI	GTAC	2 cut(s)	298, 889
DdeI	CTNAG	5 cut(s)	380, 548, 614, 784, 862
DpnI	GATC	5 cut(s)	246, 369, 429, 451, 517
DpnII	GATC	5 cut(s)	244, 367, 427, 449, 515
EciI	GGCGGA	1 cut(s)	187
Eco105I	TACGTA	1 cut(s)	665
Eco47I	GGWCC	2 cut(s)	338, 544
Eco81I	CCTNAGG	1 cut(s)	548
EcoO109I	RGGNCCY	1 cut(s)	544
EcoRII	CCWGG	3 cut(s)	842, 901, 942
EcoT22I	ATGCAT	4 cut(s)	164, 233, 333, 628
FaeI	CATG	4 cut(s)	235, 298, 335, 351
FaqI	GGGAC	3 cut(s)	83, 289, 557
FatI	CATG	4 cut(s)	231, 294, 331, 347
FauNDI	CATATG	1 cut(s)	164
FbaI	TGATCA	2 cut(s)	367, 427
FblI	GTMKAC	2 cut(s)	667, 766
FokI	GGATG	4 cut(s)	263, 284, 808, 929
FspBI	CTAG	1 cut(s)	756
GlaI	GCGC	1 cut(s)	41
GsuI	CTGGAG	2 cut(s)	840, 865
HapII	CCGG	2 cut(s)	248, 502
HhaI	GCGC	1 cut(s)	42
Hin1II	CATG	4 cut(s)	235, 298, 335, 351
Hin6I	GCGC	1 cut(s)	40
HinP1I	GCGC	1 cut(s)	40
HincII	GTYRAC	3 cut(s)	109, 305, 767
HindII	GTYRAC	3 cut(s)	109, 305, 767
HindIII	AAGCTT	1 cut(s)	631
HinfI	GANTC	2 cut(s)	583, 673
HpaII	CCGG	2 cut(s)	248, 502
HphI	GGTGA	3 cut(s)	38, 491, 802
Hpy166II	GTNNAC	5 cut(s)	109, 305, 668, 767, 878
Hpy188I	TCNGA	3 cut(s)	427, 678, 865
Hpy188III	TCNNGA	5 cut(s)	89, 248, 414, 793, 952
Hpy8I	GTNNAC	5 cut(s)	109, 305, 668, 767, 878
HpyAV	CCTTC	2 cut(s)	714, 796
HpyCH4III	ACNGT	4 cut(s)	302, 409, 685, 700
HpyCH4IV	ACGT	1 cut(s)	664
HpyCH4V	TGCA	7 cut(s)	162, 231, 331, 440, 607, 626, 972
HpyF10VI	GCNNNNNNNGC	2 cut(s)	846, 969
HpyF3I	CTNAG	5 cut(s)	380, 548, 614, 784, 862
HpySE526I	ACGT	1 cut(s)	664
Hsp92II	CATG	4 cut(s)	235, 298, 335, 351
HspAI	GCGC	1 cut(s)	40
Kpn2I	TCCGGA	1 cut(s)	247
Ksp22I	TGATCA	2 cut(s)	367, 427
Kzo9I	GATC	5 cut(s)	244, 367, 427, 449, 515
LmnI	GCTCC	1 cut(s)	846
LweI	GCATC	4 cut(s)	241, 613, 635, 950
MaeI	CTAG	1 cut(s)	756
MaeII	ACGT	1 cut(s)	664
MaeIII	GTNAC	3 cut(s)	236, 343, 482
MalI	GATC	5 cut(s)	246, 369, 429, 451, 517
MboI	GATC	5 cut(s)	244, 367, 427, 449, 515
MboII	GAAGA	2 cut(s)	381, 811
MfeI	CAATTG	1 cut(s)	741
MhlI	GDGCHC	1 cut(s)	212
MluCI	AATT	2 cut(s)	443, 741
MlyI	GAGTC	1 cut(s)	592
MmeI	TCCRAC	2 cut(s)	667, 961
MnlI	CCTC	6 cut(s)	162, 199, 208, 502, 748, 780
Mph1103I	ATGCAT	4 cut(s)	164, 233, 333, 628
MroI	TCCGGA	1 cut(s)	247
MroXI	GAANNNNTTC	1 cut(s)	724
MseI	TTAA	3 cut(s)	324, 446, 909
MslI	CAYNNNNRTG	1 cut(s)	352
MspA1I	CMGCKG	1 cut(s)	433
MspI	CCGG	2 cut(s)	248, 502
MspR9I	CCNGG	3 cut(s)	844, 903, 944
MunI	CAATTG	1 cut(s)	741
Mva1269I	GAATGC	2 cut(s)	750, 947
MvaI	CCWGG	3 cut(s)	844, 903, 944
MvnI	CGCG	1 cut(s)	202
MwoI	GCNNNNNNNGC	2 cut(s)	846, 969
NdeI	CATATG	1 cut(s)	164
NdeII	GATC	5 cut(s)	244, 367, 427, 449, 515
NlaIII	CATG	4 cut(s)	235, 298, 335, 351
NlaIV	GGNNCC	2 cut(s)	211, 545
NmuCI	GTSAC	1 cut(s)	343
NsiI	ATGCAT	4 cut(s)	164, 233, 333, 628
NspI	RCATGY	4 cut(s)	235, 298, 335, 351
PaeI	GCATGC	2 cut(s)	235, 335
PciI	ACATGT	1 cut(s)	294
PctI	GAATGC	2 cut(s)	750, 947
PdmI	GAANNNNTTC	1 cut(s)	724
PfeI	GAWTC	1 cut(s)	673
PflFI	GACNNNGTC	1 cut(s)	95
PleI	GAGTC	1 cut(s)	591
PpsI	GAGTC	1 cut(s)	591
Ppu21I	YACGTR	1 cut(s)	665
PpuMI	RGGWCCY	1 cut(s)	544
PscI	ACATGT	1 cut(s)	294
Psp5II	RGGWCCY	1 cut(s)	544
Psp6I	CCWGG	3 cut(s)	842, 901, 942
PspGI	CCWGG	3 cut(s)	842, 901, 942
PspN4I	GGNNCC	2 cut(s)	211, 545
PspPI	GGNCC	2 cut(s)	338, 544
PspPPI	RGGWCCY	1 cut(s)	544
PsyI	GACNNNGTC	1 cut(s)	95
PvuII	CAGCTG	1 cut(s)	433
RsaI	GTAC	2 cut(s)	299, 890
RsaNI	GTAC	2 cut(s)	298, 889
RseI	CAYNNNNRTG	1 cut(s)	352
SalI	GTCGAC	1 cut(s)	765
SaqAI	TTAA	3 cut(s)	324, 446, 909
Sau3AI	GATC	5 cut(s)	244, 367, 427, 449, 515
Sau96I	GGNCC	2 cut(s)	338, 544
SchI	GAGTC	1 cut(s)	592
ScrFI	CCNGG	3 cut(s)	844, 903, 944
SduI	GDGCHC	1 cut(s)	212
SfaNI	GCATC	4 cut(s)	241, 613, 635, 950
SinI	GGWCC	2 cut(s)	338, 544
SmiMI	CAYNNNNRTG	1 cut(s)	352
SnaBI	TACGTA	1 cut(s)	665
SphI	GCATGC	2 cut(s)	235, 335
Sse9I	AATT	2 cut(s)	443, 741
SsiI	CCGC	2 cut(s)	172, 384
SspMI	CTAG	1 cut(s)	756
StyD4I	CCNGG	3 cut(s)	842, 901, 942
TaaI	ACNGT	4 cut(s)	302, 409, 685, 700
TaiI	ACGT	1 cut(s)	667
TaqI	TCGA	2 cut(s)	452, 766
TasI	AATT	2 cut(s)	443, 741
TatI	WGTACW	1 cut(s)	297
TfiI	GAWTC	1 cut(s)	673
Tru1I	TTAA	3 cut(s)	324, 446, 909
Tru9I	TTAA	3 cut(s)	324, 446, 909
TscAI	CASTG	1 cut(s)	348
TseFI	GTSAC	1 cut(s)	343
Tsp45I	GTSAC	1 cut(s)	343
TspDTI	ATGAA	2 cut(s)	812, 911
TspRI	CASTG	1 cut(s)	348
Tth111I	GACNNNGTC	1 cut(s)	95
VpaK11BI	GGWCC	2 cut(s)	338, 544
XceI	RCATGY	4 cut(s)	235, 298, 335, 351
XmiI	GTMKAC	2 cut(s)	667, 766
XmnI	GAANNNNTTC	1 cut(s)	724
XspI	CTAG	1 cut(s)	756
Zsp2I	ATGCAT	4 cut(s)	164, 233, 333, 628

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.