Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0004801

Physical Location & Seq

Genomic Coordinates Reverse (-)

1478883 .. 1481649

Gene Structure 2767 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1016900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

ATGAGTTATTGCGATCCTGAGGCTGTGGTTGGATGCGAGGATGGGACAGGTCGTGTATTTGACATGTACAGTAAAAAATCACATGCAGGGCCAGTAACATGCTTATGTTTGAGTGATGATCAGTTGATACTTAGTGGTTCATCTCTTGGTGGCATAAAGACTTTGTGTTTCAACCCGGGCTCTCACTTAGTATTTGCTGGATACGCTGTTGGATTTGCATTATGCTGTGACATTAGGGTATCATCTTTGCAACACATGAGAAATGATGCATCAACATTGGCGGTTGGTGGAATAGACGGTGTGCTTCGTCTTCTGAACCAAAAAACAGGTGAAGTAATCTCAAGTTGCGTCTTGGATGGATATTTGTCATCAAGTTCTCGAAACACGATTGGGGCTACCCAAAGAATGAGAGGAACGAGGCTTTCAGAAGATACCCCCGTTGAGAGCATTCTTAGTACCAGACGGGCTCCGATTACGTGTTTGACTGTCGGGATGAGGAAGGTTATCACCACGCACTACGATAAGTACATCAGAATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

F-box F-box-like WD40

Protein Analysis

180

Amino Acids

19.22

Weight (kDa)

8.08

Isoelectric Point (pI)

40.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004801)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G52030 AT3G52030
fragaria_vesca	FvH4_2g17910 FvH4_7g01770 FvH4_7g01770 FvH4_7g01770 FvH4_7g01770 FvH4_7g01770 FvH4_7g01770 FvH4_7g01770 FvH4_7g01770 FvH4_7g01770 FvH4_7g01770 FvH4_7g01770 FvH4_7g01770
malus_domestica	MD07G1016900.v1.1 MD07G1023200.v1.1
prunus_persica	Prupe.2G024000_v2.0.a1
pyrus_communis	pycom07g01760
rosa_chinensis	RchiOBHm_Chr1g0318361
rosa_laevigata	RLG00000030542
rosa_multiflora	Rmu_sc0002662.1_g000010 Rmu_sc0003936.1_g000037
rosa_roxburghii	Rroxscaffold_4G00329280
rosa_rugosa	Rorug01G0020800 Rorug01G0020900
rosa_samantha	Rh1AG032900 Rh1BG028800 Rh1CG031300 Rh1DG038200
rosa_wichuraiana	Rw1G002640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	281
AclWI	GGATC	1 cut(s)	8
AfaI	GTAC	3 cut(s)	68, 457, 527
AflIII	ACRYGT	2 cut(s)	63, 476
AgsI	TTSAA	1 cut(s)	172
AlwI	GGATC	1 cut(s)	8
AlwNI	CAGNNNCTG	1 cut(s)	537
Ama87I	CYCGRG	1 cut(s)	175
AoxI	GGCC	1 cut(s)	89
AspS9I	GGNCC	1 cut(s)	89
AsuC2I	CCSGG	2 cut(s)	176, 177
AsuHPI	GGTGA	2 cut(s)	341, 499
AvaI	CYCGRG	1 cut(s)	175
AxyI	CCTNAGG	1 cut(s)	18
BaeI	ACNNNNGTAYC	2 cut(s)	423, 456
BanII	GRGCYC	2 cut(s)	182, 469
BbsI	GAAGAC	1 cut(s)	302
BccI	CCATC	2 cut(s)	35, 350
BciVI	GTATCC	1 cut(s)	194
BclI	TGATCA	1 cut(s)	118
BcnI	CCSGG	2 cut(s)	176, 177
BfuI	GTATCC	1 cut(s)	194
Bme1390I	CCNGG	2 cut(s)	176, 177
BmeT110I	CYCGRG	1 cut(s)	175
BmgT120I	GGNCC	1 cut(s)	89
BmiI	GGNNCC	1 cut(s)	468
BmrFI	CCNGG	2 cut(s)	176, 177
BmsI	GCATC	3 cut(s)	23, 256, 278
BpiI	GAAGAC	1 cut(s)	302
BpuEI	CTTGAG	1 cut(s)	325
BpuMI	CCSGG	2 cut(s)	176, 177
BsaAI	YACGTR	1 cut(s)	477
BsaJI	CCNNGG	1 cut(s)	175
Bse1I	ACTGG	1 cut(s)	92
Bse21I	CCTNAGG	1 cut(s)	18
BseDI	CCNNGG	1 cut(s)	175
BseGI	GGATG	4 cut(s)	38, 46, 361, 498
BseMII	CTCAG	1 cut(s)	9
BseNI	ACTGG	1 cut(s)	92
BshFI	GGCC	1 cut(s)	91
BsiHKCI	CYCGRG	1 cut(s)	175
BsiSI	CCGG	1 cut(s)	176
BslFI	GGGAC	1 cut(s)	58
BsmFI	GGGAC	1 cut(s)	58
BsmI	GAATGC	1 cut(s)	447
BsnI	GGCC	1 cut(s)	91
BsoBI	CYCGRG	1 cut(s)	175
Bsp1286I	GDGCHC	2 cut(s)	182, 469
Bsp1407I	TGTACA	1 cut(s)	66
Bsp143I	GATC	2 cut(s)	13, 118
BspACI	CCGC	1 cut(s)	281
BspANI	GGCC	1 cut(s)	91
BspCNI	CTCAG	1 cut(s)	10
BspLI	GGNNCC	1 cut(s)	468
BspPI	GGATC	1 cut(s)	8
BsrGI	TGTACA	1 cut(s)	66
BsrI	ACTGG	1 cut(s)	92
BssECI	CCNNGG	1 cut(s)	175
BssMI	GATC	2 cut(s)	13, 118
Bst4CI	ACNGT	3 cut(s)	71, 299, 487
BstAUI	TGTACA	1 cut(s)	66
BstBAI	YACGTR	1 cut(s)	477
BstDEI	CTNAG	4 cut(s)	18, 131, 187, 452
BstF5I	GGATG	4 cut(s)	38, 46, 361, 498
BstKTI	GATC	2 cut(s)	16, 121
BstMBI	GATC	2 cut(s)	13, 118
BstMWI	GCNNNNNNNGC	1 cut(s)	203
BstNSI	RCATGY	3 cut(s)	67, 86, 102
BstSCI	CCNGG	2 cut(s)	174, 175
BstV2I	GAAGAC	1 cut(s)	302
Bsu36I	CCTNAGG	1 cut(s)	18
BsuI	GTATCC	1 cut(s)	194
BsuRI	GGCC	1 cut(s)	91
BtsCI	GGATG	4 cut(s)	38, 46, 361, 498
CaiI	CAGNNNCTG	1 cut(s)	537
Cfr13I	GGNCC	1 cut(s)	89
Cfr9I	CCCGGG	1 cut(s)	175
CseI	GACGC	1 cut(s)	337
Csp6I	GTAC	3 cut(s)	67, 456, 526
CviAII	CATG	4 cut(s)	64, 83, 99, 256
CviJI	RGCY	6 cut(s)	23, 91, 180, 395, 421, 467
CviKI_1	RGCY	6 cut(s)	23, 91, 180, 395, 421, 467
CviQI	GTAC	3 cut(s)	67, 456, 526
DdeI	CTNAG	4 cut(s)	18, 131, 187, 452
DpnI	GATC	2 cut(s)	15, 120
DpnII	GATC	2 cut(s)	13, 118
Eco24I	GRGCYC	2 cut(s)	182, 469
Eco81I	CCTNAGG	1 cut(s)	18
Eco88I	CYCGRG	1 cut(s)	175
EcoT22I	ATGCAT	1 cut(s)	271
EcoT38I	GRGCYC	2 cut(s)	182, 469
FaeI	CATG	4 cut(s)	67, 86, 102, 259
FaiI	YATR	7 cut(s)	65, 84, 100, 106, 155, 223, 257
FaqI	GGGAC	1 cut(s)	58
FatI	CATG	4 cut(s)	63, 82, 98, 255
FbaI	TGATCA	1 cut(s)	118
FokI	GGATG	4 cut(s)	45, 53, 368, 505
FriOI	GRGCYC	2 cut(s)	182, 469
HaeIII	GGCC	1 cut(s)	91
HapII	CCGG	1 cut(s)	176
HgaI	GACGC	1 cut(s)	337
Hin1II	CATG	4 cut(s)	67, 86, 102, 259
HinfI	GANTC	1 cut(s)	534
HpaII	CCGG	1 cut(s)	176
HphI	GGTGA	2 cut(s)	341, 499
Hpy188I	TCNGA	5 cut(s)	315, 427, 471, 533, 539
Hpy188III	TCNNGA	3 cut(s)	17, 378, 490
HpyAV	CCTTC	1 cut(s)	493
HpyCH4III	ACNGT	3 cut(s)	71, 299, 487
HpyCH4IV	ACGT	1 cut(s)	476
HpyCH4V	TGCA	4 cut(s)	86, 218, 250, 269
HpyF10VI	GCNNNNNNNGC	1 cut(s)	203
HpyF3I	CTNAG	4 cut(s)	18, 131, 187, 452
HpySE526I	ACGT	1 cut(s)	476
Hsp92II	CATG	4 cut(s)	67, 86, 102, 259
Ksp22I	TGATCA	1 cut(s)	118
Kzo9I	GATC	2 cut(s)	13, 118
LmnI	GCTCC	1 cut(s)	472
LpnPI	CCDG	8 cut(s)	30, 33, 72, 105, 183, 189, 312, 472
LweI	GCATC	3 cut(s)	23, 256, 278
MaeII	ACGT	1 cut(s)	476
MaeIII	GTNAC	2 cut(s)	94, 227
MalI	GATC	2 cut(s)	15, 120
MboI	GATC	2 cut(s)	13, 118
MboII	GAAGA	2 cut(s)	302, 440
MhlI	GDGCHC	2 cut(s)	182, 469
MmeI	TCCRAC	2 cut(s)	10, 190
MnlI	CCTC	5 cut(s)	13, 31, 404, 411, 489
Mph1103I	ATGCAT	1 cut(s)	271
MslI	CAYNNNNRTG	1 cut(s)	103
MspI	CCGG	1 cut(s)	176
MspR9I	CCNGG	2 cut(s)	176, 177
Mva1269I	GAATGC	1 cut(s)	447
MwoI	GCNNNNNNNGC	1 cut(s)	203
NciI	CCSGG	2 cut(s)	176, 177
NdeII	GATC	2 cut(s)	13, 118
NlaIII	CATG	4 cut(s)	67, 86, 102, 259
NlaIV	GGNNCC	1 cut(s)	468
NmuCI	GTSAC	1 cut(s)	227
NsiI	ATGCAT	1 cut(s)	271
NspI	RCATGY	3 cut(s)	67, 86, 102
PciI	ACATGT	1 cut(s)	63
PctI	GAATGC	1 cut(s)	447
PfeI	GAWTC	1 cut(s)	534
Ppu21I	YACGTR	1 cut(s)	477
PscI	ACATGT	1 cut(s)	63
PspN4I	GGNNCC	1 cut(s)	468
PspPI	GGNCC	1 cut(s)	89
PstNI	CAGNNNCTG	1 cut(s)	537
RsaI	GTAC	3 cut(s)	68, 457, 527
RsaNI	GTAC	3 cut(s)	67, 456, 526
RseI	CAYNNNNRTG	1 cut(s)	103
Sau3AI	GATC	2 cut(s)	13, 118
Sau96I	GGNCC	1 cut(s)	89
ScrFI	CCNGG	2 cut(s)	176, 177
SduI	GDGCHC	2 cut(s)	182, 469
SetI	ASST	4 cut(s)	52, 331, 479, 504
SfaNI	GCATC	3 cut(s)	23, 256, 278
SmaI	CCCGGG	1 cut(s)	177
SmiMI	CAYNNNNRTG	1 cut(s)	103
SmlI	CTYRAG	1 cut(s)	340
SmoI	CTYRAG	1 cut(s)	340
SsiI	CCGC	1 cut(s)	281
StyD4I	CCNGG	2 cut(s)	174, 175
TaaI	ACNGT	3 cut(s)	71, 299, 487
TaiI	ACGT	1 cut(s)	479
TaqI	TCGA	1 cut(s)	379
TatI	WGTACW	2 cut(s)	66, 525
TfiI	GAWTC	1 cut(s)	534
TseFI	GTSAC	1 cut(s)	227
Tsp45I	GTSAC	1 cut(s)	227
TspDTI	ATGAA	1 cut(s)	129
TspMI	CCCGGG	1 cut(s)	175
XceI	RCATGY	3 cut(s)	67, 86, 102
XmaI	CCCGGG	1 cut(s)	175
Zsp2I	ATGCAT	1 cut(s)	271

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.