Prupe.2G024000_v2.0.a1

F-box WD-40 repeat-containing protein

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
Physical Location & Seq
Forward (+)
2386807 .. 2392264
5458 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G024000.1

Sequence Viewer

Length: 1302 bp
ATGGATCTCTCTCTCGCCGGCGACAAGAAGAGGCCGCGCAGAAGCTCAAGAGCAAGAGCTCCGACCACAGTCGGCTCTTTCCAACAGGACATCCTTTGCATCATCTTCTCTTTTCTCGACTGCTTCGACCTCGCAAGTTGTTCCGTCGTATGCAAATCCTGGAGTGCGATTATCAACAAGTCTAAGTTGCTCCAATTGCTTTACCGCAAGCAATGGCAGACGGGTCTTTTGGGTTCCAGCAATTGGTCTAAAGAATGTCCTGAGAAATCTTGGAAGGATTATTTGGAGGAGATGGCTGTGGAGCGTCATAGACTGGCATTACAGGAAGGTCGAATTCGTGTTGATCACTTGAGGGGTCACTCTGTTGGGGGTGAACAGTGTCGAACGAAGATGGGGTTGCTTCTTACTGGCGTCGGTGATAAGGTTATGCGTCTTTGGTCATTGGAGAGCTATAAATGTGTAGGGGAATATCCCATTCCAGACAGAGTCCGTTTAGTTGACTTTGATTTTGATGAGAGCAAGATTGTTGGCTTGGTTGGCACTCGTATATGCATATGGAGGCAGAATGGGATAAGTAGAATATTTCCCTCGCATGAGGGAACCTTTTCGAAGGGTTTATGCATGCGTTACTGCGATCCTGAGGCTGTGGTCGGCTGTGAGGATGGGACAGTTCGTGTATTTGACATGTACAGTAGAAAATGTTCTCAAATCATTAGGGCACATGAGGGGCCAGTAAAATGCTTATGTTTGAGTGATGATCAGTTGATACTTAGTGGTTCTTCTCTTGGCGATGTCGCATTATCTGCACTTTCATCTGGCGAGCGGGTAGTGAAGTTACGATCACAAGATTCCTCAGGCATAAAGACTTTATGTTTCAACCCATGCTCTCACCAAGTATTTGCTGGAACTGCTACTGGATATGGACTTTGTTGGGACCTAAGGATGGGACTTTTGTGGAAGACACGAGTTAGTCAAAATAGTGTATATTCAATGCAACACCAGAGAAATGATGCATCAACTTTGGCTGTTGGTGGAATAGACGGTGTGCTACGTCTACTGAATCAGAACACAGGTGAAGTAATTTCAAGATGCATCTTGGATGGTTATTTATCACCAAGTTCACAAAACACACTTGGGGCTACACAAAGAACGAGGGGAAGAAGGCTTTCAGAAGATACCGCCATTGACAGCATTCTCAGAAGCTGTCGACCTCCCATTACGTGCTTGGCTGTAGGGATGAAGAAGGTTATCACCACACACAACAGCAAGTACATCAGAATCTGGAAATTTGACAGGGGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

434

Amino Acids

48.39

Weight (kDa)

9.16

Isoelectric Point (pI)

39.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 243
AccBSI CCGCTC 1 cut(s) 823
AccI GTMKAC 2 cut(s) 1054, 1207
AccII CGCG 1 cut(s) 37
AciI CCGC 4 cut(s) 35, 205, 823, 1179
AclWI GGATC 2 cut(s) 12, 629
AcsI RAATTY 2 cut(s) 333, 1286
AcyI GRCGYC 1 cut(s) 411
AfaI GTAC 2 cut(s) 689, 1271
AfiI CCNNNNNNNGG 2 cut(s) 243, 943
AflIII ACRYGT 1 cut(s) 684
AgsI TTSAA 3 cut(s) 877, 990, 1086
AjnI CCWGG 1 cut(s) 158
AjuI GAANNNNNNNTTGG 2 cut(s) 266, 298
AluBI AGCT 4 cut(s) 45, 59, 450, 1203
AluI AGCT 4 cut(s) 45, 59, 450, 1203
Alw21I GWGCWC 1 cut(s) 61
AlwI GGATC 2 cut(s) 12, 629
AlwNI CAGNNNCTG 3 cut(s) 1203, 1281, 1299
AoxI GGCC 2 cut(s) 32, 728
ApoI RAATTY 2 cut(s) 333, 1286
ArsI GACNNNNNNTTYG 4 cut(s) 211, 243, 491, 523
Asp700I GAANNNNTTC 3 cut(s) 604, 700, 1165
AspLEI GCGC 1 cut(s) 39
AspS9I GGNCC 2 cut(s) 728, 934
AsuHPI GGTGA 6 cut(s) 383, 428, 881, 1085, 1104, 1243
AsuII TTCGAA 1 cut(s) 608
AvaII GGWCC 1 cut(s) 934
AxyI CCTNAGG 3 cut(s) 639, 853, 938
BaeGI GKGCMC 1 cut(s) 721
BanII GRGCYC 1 cut(s) 61
BauI CACGAG 1 cut(s) 963
BbsI GAAGAC 1 cut(s) 965
Bbv12I GWGCWC 1 cut(s) 61
BccI CCATC 5 cut(s) 286, 385, 656, 937, 1094
BciT130I CCWGG 1 cut(s) 160
BclI TGATCA 2 cut(s) 343, 757
BfmI CTRYAG 1 cut(s) 1230
BisI GCNGC 1 cut(s) 35
BlsI GCNGC 1 cut(s) 36
Bme1390I CCNGG 1 cut(s) 160
Bme18I GGWCC 1 cut(s) 934
BmgT120I GGNCC 2 cut(s) 728, 934
BmiI GGNNCC 4 cut(s) 235, 601, 729, 935
BmrFI CCNGG 1 cut(s) 160
BmsI GCATC 5 cut(s) 108, 1000, 1022, 1079, 1101
BoxI GACNNNNGTC 1 cut(s) 68
BpiI GAAGAC 1 cut(s) 965
BpmI CTGGAG 1 cut(s) 181
Bpu14I TTCGAA 1 cut(s) 608
BpuEI CTTGAG 2 cut(s) 31, 370
BsaAI YACGTR 1 cut(s) 1221
BsaHI GRCGYC 1 cut(s) 411
Bsc4I CCNNNNNNNGG 2 cut(s) 243, 943
Bse118I RCCGGY 1 cut(s) 17
Bse1I ACTGG 4 cut(s) 318, 412, 731, 919
Bse21I CCTNAGG 3 cut(s) 639, 853, 938
Bse3DI GCAATG 1 cut(s) 218
BseBI CCWGG 1 cut(s) 160
BseGI GGATG 5 cut(s) 90, 667, 948, 1105, 1242
BseLI CCNNNNNNNGG 2 cut(s) 243, 943
BseMI GCAATG 1 cut(s) 218
BseMII CTCAG 4 cut(s) 252, 630, 867, 1210
BseNI ACTGG 4 cut(s) 318, 412, 731, 919
BseRI GAGGAG 1 cut(s) 302
BseSI GKGCMC 1 cut(s) 721
BsgI GTGCAG 1 cut(s) 789
Bsh1236I CGCG 1 cut(s) 37
BshFI GGCC 2 cut(s) 34, 730
BsiHKAI GWGCWC 1 cut(s) 61
BsiSI CCGG 1 cut(s) 18
BslFI GGGAC 3 cut(s) 679, 947, 960
BslI CCNNNNNNNGG 2 cut(s) 243, 943
BsmFI GGGAC 3 cut(s) 679, 947, 960
BsmI GAATGC 1 cut(s) 1191
BsnI GGCC 2 cut(s) 34, 730
Bsp119I TTCGAA 1 cut(s) 608
Bsp1286I GDGCHC 2 cut(s) 61, 721
Bsp1407I TGTACA 1 cut(s) 687
Bsp143I GATC 5 cut(s) 4, 343, 634, 757, 839
BspACI CCGC 4 cut(s) 35, 205, 823, 1179
BspANI GGCC 2 cut(s) 34, 730
BspCNI CTCAG 4 cut(s) 253, 631, 866, 1209
BspFNI CGCG 1 cut(s) 37
BspLI GGNNCC 4 cut(s) 235, 601, 729, 935
BspPI GGATC 2 cut(s) 12, 629
BspT104I TTCGAA 1 cut(s) 608
BsrBI CCGCTC 1 cut(s) 823
BsrDI GCAATG 1 cut(s) 218
BsrFI RCCGGY 1 cut(s) 17
BsrGI TGTACA 1 cut(s) 687
BsrI ACTGG 4 cut(s) 318, 412, 731, 919
BssAI RCCGGY 1 cut(s) 17
BssMI GATC 5 cut(s) 4, 343, 634, 757, 839
BssNI GRCGYC 1 cut(s) 411
BssSI CACGAG 1 cut(s) 963
Bst2BI CACGAG 1 cut(s) 963
Bst2UI CCWGG 1 cut(s) 160
Bst4CI ACNGT 5 cut(s) 70, 378, 670, 692, 1043
Bst6I CTCTTC 1 cut(s) 23
BstACI GRCGYC 1 cut(s) 411
BstAPI GCANNNNNTGC 1 cut(s) 803
BstAUI TGTACA 1 cut(s) 687
BstBAI YACGTR 1 cut(s) 1221
BstBI TTCGAA 1 cut(s) 608
BstC8I GCNNGC 4 cut(s) 19, 209, 623, 821
BstDEI CTNAG 7 cut(s) 183, 261, 639, 770, 853, 938, 1196
BstF5I GGATG 5 cut(s) 90, 667, 948, 1105, 1242
BstFNI CGCG 1 cut(s) 37
BstHHI GCGC 1 cut(s) 39
BstKTI GATC 5 cut(s) 7, 346, 637, 760, 842
BstMBI GATC 5 cut(s) 4, 343, 634, 757, 839
BstMWI GCNNNNNNNGC 4 cut(s) 196, 537, 803, 908
BstNI CCWGG 1 cut(s) 160
BstNSI RCATGY 2 cut(s) 625, 688
BstPAI GACNNNNGTC 1 cut(s) 68
BstSCI CCNGG 1 cut(s) 158
BstSFI CTRYAG 1 cut(s) 1230
BstSLI GKGCMC 1 cut(s) 721
BstUI CGCG 1 cut(s) 37
BstV2I GAAGAC 1 cut(s) 965
BstX2I RGATCY 1 cut(s) 4
BstYI RGATCY 1 cut(s) 4
Bsu36I CCTNAGG 3 cut(s) 639, 853, 938
BsuRI GGCC 2 cut(s) 34, 730
BtgZI GCGATG 1 cut(s) 804
BtsCI GGATG 5 cut(s) 90, 667, 948, 1105, 1242
BtsIMutI CAGTG 1 cut(s) 383
Cac8I GCNNGC 4 cut(s) 19, 209, 623, 821
CaiI CAGNNNCTG 3 cut(s) 1203, 1281, 1299
CfoI GCGC 1 cut(s) 39
Cfr10I RCCGGY 1 cut(s) 17
Cfr13I GGNCC 2 cut(s) 728, 934
CseI GACGC 3 cut(s) 293, 400, 419
Csp6I GTAC 2 cut(s) 688, 1270
CviAII CATG 5 cut(s) 593, 622, 685, 722, 882
CviQI GTAC 2 cut(s) 688, 1270
DdeI CTNAG 7 cut(s) 183, 261, 639, 770, 853, 938, 1196
DpnI GATC 5 cut(s) 6, 345, 636, 759, 841
DpnII GATC 5 cut(s) 4, 343, 634, 757, 839
Eam1104I CTCTTC 1 cut(s) 23
EarI CTCTTC 1 cut(s) 23
Ecl136II GAGCTC 1 cut(s) 59
Eco24I GRGCYC 1 cut(s) 61
Eco47I GGWCC 1 cut(s) 934
Eco53kI GAGCTC 1 cut(s) 59
Eco81I CCTNAGG 3 cut(s) 639, 853, 938
EcoICRI GAGCTC 1 cut(s) 59
EcoO109I RGGNCCY 1 cut(s) 934
EcoRI GAATTC 1 cut(s) 333
EcoRII CCWGG 1 cut(s) 158
EcoT22I ATGCAT 4 cut(s) 554, 623, 1015, 1094
EcoT38I GRGCYC 1 cut(s) 61
FaeI CATG 5 cut(s) 596, 625, 688, 725, 885
FaqI GGGAC 3 cut(s) 679, 947, 960
FatI CATG 5 cut(s) 592, 621, 684, 721, 881
FauI CCCGC 1 cut(s) 816
FauNDI CATATG 1 cut(s) 554
FbaI TGATCA 2 cut(s) 343, 757
FblI GTMKAC 2 cut(s) 1054, 1207
Fnu4HI GCNGC 1 cut(s) 35
FokI GGATG 5 cut(s) 77, 674, 955, 1112, 1249
FriOI GRGCYC 1 cut(s) 61
Fsp4HI GCNGC 1 cut(s) 35
GlaI GCGC 1 cut(s) 38
GluI GCNGC 1 cut(s) 35
GsuI CTGGAG 1 cut(s) 181
HaeIII GGCC 2 cut(s) 34, 730
HapII CCGG 1 cut(s) 18
HgaI GACGC 3 cut(s) 293, 400, 419
HhaI GCGC 1 cut(s) 39
Hin1I GRCGYC 1 cut(s) 411
Hin1II CATG 5 cut(s) 596, 625, 688, 725, 885
Hin6I GCGC 1 cut(s) 37
HinP1I GCGC 1 cut(s) 37
HincII GTYRAC 2 cut(s) 499, 1208
HindII GTYRAC 2 cut(s) 499, 1208
HinfI GANTC 4 cut(s) 486, 848, 1060, 1278
HpaII CCGG 1 cut(s) 18
HphI GGTGA 6 cut(s) 383, 428, 881, 1085, 1104, 1243
Hpy166II GTNNAC 5 cut(s) 374, 499, 1055, 1121, 1208
Hpy188I TCNGA 5 cut(s) 63, 1065, 1171, 1199, 1277
Hpy188III TCNNGA 7 cut(s) 48, 116, 260, 479, 638, 1086, 1282
Hpy8I GTNNAC 5 cut(s) 374, 499, 1055, 1121, 1208
Hpy99I CGWCG 2 cut(s) 149, 416
HpyAV CCTTC 5 cut(s) 268, 320, 604, 1155, 1237
HpyCH4III ACNGT 5 cut(s) 70, 378, 670, 692, 1043
HpyCH4IV ACGT 2 cut(s) 1051, 1220
HpyCH4V TGCA 8 cut(s) 99, 153, 552, 621, 806, 994, 1013, 1092
HpyF10VI GCNNNNNNNGC 4 cut(s) 196, 537, 803, 908
HpyF3I CTNAG 7 cut(s) 183, 261, 639, 770, 853, 938, 1196
HpySE526I ACGT 2 cut(s) 1051, 1220
Hsp92I GRCGYC 1 cut(s) 411
Hsp92II CATG 5 cut(s) 596, 625, 688, 725, 885
HspAI GCGC 1 cut(s) 37
KroI GCCGGC 1 cut(s) 17
KroNI GCCGGC 1 cut(s) 19
Ksp22I TGATCA 2 cut(s) 343, 757
Kzo9I GATC 5 cut(s) 4, 343, 634, 757, 839
LmnI GCTCC 3 cut(s) 64, 195, 301
LweI GCATC 5 cut(s) 108, 1000, 1022, 1079, 1101
MaeII ACGT 2 cut(s) 1051, 1220
MaeIII GTNAC 3 cut(s) 356, 626, 834
MalI GATC 5 cut(s) 6, 345, 636, 759, 841
MbiI CCGCTC 1 cut(s) 823
MboI GATC 5 cut(s) 4, 343, 634, 757, 839
MboII GAAGA 8 cut(s) 40, 97, 400, 771, 970, 1170, 1184, 1252
MfeI CAATTG 2 cut(s) 194, 241
MflI RGATCY 1 cut(s) 4
MhlI GDGCHC 2 cut(s) 61, 721
MluCI AATT 5 cut(s) 194, 241, 333, 1080, 1286
MlyI GAGTC 1 cut(s) 495
MmeI TCCRAC 2 cut(s) 86, 106
Mph1103I ATGCAT 4 cut(s) 554, 623, 1015, 1094
MreI CGCCGGCG 1 cut(s) 17
MroNI GCCGGC 1 cut(s) 17
MroXI GAANNNNTTC 3 cut(s) 604, 700, 1165
MspI CCGG 1 cut(s) 18
MspR9I CCNGG 1 cut(s) 160
MunI CAATTG 2 cut(s) 194, 241
Mva1269I GAATGC 1 cut(s) 1191
MvaI CCWGG 1 cut(s) 160
MvnI CGCG 1 cut(s) 37
MwoI GCNNNNNNNGC 4 cut(s) 196, 537, 803, 908
NaeI GCCGGC 1 cut(s) 19
NdeI CATATG 1 cut(s) 554
NdeII GATC 5 cut(s) 4, 343, 634, 757, 839
NgoMIV GCCGGC 1 cut(s) 17
NlaIII CATG 5 cut(s) 596, 625, 688, 725, 885
NlaIV GGNNCC 4 cut(s) 235, 601, 729, 935
NmuCI GTSAC 1 cut(s) 356
NsiI ATGCAT 4 cut(s) 554, 623, 1015, 1094
NspI RCATGY 2 cut(s) 625, 688
NspV TTCGAA 1 cut(s) 608
PaeI GCATGC 1 cut(s) 625
PciI ACATGT 1 cut(s) 684
PcsI WCGNNNNNNNCGW 1 cut(s) 123
PctI GAATGC 1 cut(s) 1191
PdiI GCCGGC 1 cut(s) 19
PdmI GAANNNNTTC 3 cut(s) 604, 700, 1165
PfeI GAWTC 3 cut(s) 848, 1060, 1278
PflFI GACNNNGTC 1 cut(s) 485
PflMI CCANNNNNTGG 1 cut(s) 243
PfoI TCCNGGA 1 cut(s) 158
PkrI GCNGC 1 cut(s) 36
PleI GAGTC 1 cut(s) 494
PpsI GAGTC 1 cut(s) 494
Ppu21I YACGTR 1 cut(s) 1221
PpuMI RGGWCCY 1 cut(s) 934
PscI ACATGT 1 cut(s) 684
PshAI GACNNNNGTC 1 cut(s) 68
Psp124BI GAGCTC 1 cut(s) 61
Psp5II RGGWCCY 1 cut(s) 934
Psp6I CCWGG 1 cut(s) 158
PspGI CCWGG 1 cut(s) 158
PspN4I GGNNCC 4 cut(s) 235, 601, 729, 935
PspPI GGNCC 2 cut(s) 728, 934
PspPPI RGGWCCY 1 cut(s) 934
PsrI GAACNNNNNNTAC 2 cut(s) 685, 717
PstNI CAGNNNCTG 3 cut(s) 1203, 1281, 1299
PsuI RGATCY 1 cut(s) 4
PsyI GACNNNGTC 1 cut(s) 485
RsaI GTAC 2 cut(s) 689, 1271
RsaNI GTAC 2 cut(s) 688, 1270
SacI GAGCTC 1 cut(s) 61
SalI GTCGAC 1 cut(s) 1206
SatI GCNGC 1 cut(s) 35
Sau3AI GATC 5 cut(s) 4, 343, 634, 757, 839
Sau96I GGNCC 2 cut(s) 728, 934
SchI GAGTC 1 cut(s) 495
ScrFI CCNGG 1 cut(s) 160
SduI GDGCHC 2 cut(s) 61, 721
SfaNI GCATC 5 cut(s) 108, 1000, 1022, 1079, 1101
SfcI CTRYAG 1 cut(s) 1230
SfuI TTCGAA 1 cut(s) 608
SgrAI CRCCGGYG 1 cut(s) 17
SinI GGWCC 1 cut(s) 934
SmlI CTYRAG 2 cut(s) 46, 349
SmoI CTYRAG 2 cut(s) 46, 349
SphI GCATGC 1 cut(s) 625
Sse9I AATT 5 cut(s) 194, 241, 333, 1080, 1286
SsiI CCGC 4 cut(s) 35, 205, 823, 1179
SspI AATATT 1 cut(s) 582
SstI GAGCTC 1 cut(s) 61
StyD4I CCNGG 1 cut(s) 158
TaaI ACNGT 5 cut(s) 70, 378, 670, 692, 1043
TaiI ACGT 2 cut(s) 1054, 1223
TaqI TCGA 6 cut(s) 117, 126, 331, 382, 608, 1207
TasI AATT 5 cut(s) 194, 241, 333, 1080, 1286
TatI WGTACW 2 cut(s) 687, 1269
TauI GCSGC 1 cut(s) 37
TfiI GAWTC 3 cut(s) 848, 1060, 1278
TscAI CASTG 1 cut(s) 383
TseFI GTSAC 1 cut(s) 356
Tsp45I GTSAC 1 cut(s) 356
TspDTI ATGAA 2 cut(s) 801, 1253
TspGWI ACGGA 2 cut(s) 133, 479
TspRI CASTG 1 cut(s) 383
Tth111I GACNNNGTC 1 cut(s) 485
Van91I CCANNNNNTGG 1 cut(s) 243
VpaK11BI GGWCC 1 cut(s) 934
XapI RAATTY 2 cut(s) 333, 1286
XceI RCATGY 2 cut(s) 625, 688
XcmI CCANNNNNNNNNTGG 2 cut(s) 899, 1222
XmiI GTMKAC 2 cut(s) 1054, 1207
XmnI GAANNNNTTC 3 cut(s) 604, 700, 1165
Zsp2I ATGCAT 4 cut(s) 554, 623, 1015, 1094
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.