Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0004801

Physical Location & Seq

Genomic Coordinates Forward (+)

1383252 .. 1389034

Gene Structure 5783 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g01760.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1299 bp

ATGGATATCTCTTTCACCGGCGACAAGGAGAGGCGGAGCAGCAGCTCAAGAGCAAGATCTCCGACCACAATCCAGTCCCTCCAACACGAAATCCTTTGCACTATCTTCTCTTTCCTCGACTTCTTCGACCTCGCAAGTTGTTCCGCCGTATGCAAAACCTGGAGCACGGTGATCAACAAGTCTAAGTTGCTCCGAGTGTTTTGCCGCAAGCAATGGCAGATGCGTCTTGCGGGTTCTAGCAATGGGTCTAGTGATGGTCCTGAGAAACCTTGGGAGGTTTTTTTGGAGGAGATGGCTGTGGAGCGTCATAAACTGGCGTTACACGAAGGTCGAATTCGAGTCGATCACTTGAGGGGTCACTCTGTTGGGGTTGGACAGTGTCGAAAAAAGATGGGGTTGCTTCTCACTGGCAGCGGTGATAAGGTTATGCGTCTTTGGTCATTGGAAAGCTATAAATGTGTGGGAGAATATCCCATTCCAGACAAGGTTCCTTTGGTTGACTTTGATTTTGATGAAAGCAAGATTGTAGGTTTGGTTGGCACTCGTATATGCATATGGAGGAGGAATGCGATGAGAAGCATATTTCCCTTGCGTGAGGGCACCTTTCCGAAGGGTTTATGCATGCGTTACTGCGATCCTGAGGCTGTGGTTGGATGCGAGGATGGGACAGCTCGTGTATTTGACATATATAGTAAACAATGTTCTCAAATCATTAGAACGCATGCTGGGCCAGTAACATGCTTATGTTTGAGTGATGATCAGTTGATACTTAGTGGTTCATCTCTTGGTGGTATCACAATATCTGGACTTTCATCTGGCGAGCAGGTTGCGAAATTAAGTTCAAATGATTCCTCAGGCATAAAGACTTTGTGTTTCAACGCGGGCTCTCACTTAGTATTTGCTGGATCAGCTGCTGGATATGCATTATGTTGGGACGTTAGGACAATGAAATGTTTATGGGAGACACGAGTGAGTCCAAGTAGGGTATACACGTTGCAGCACATGAGAAATGATGCATCGACGTTGGCGGTTGGCGGAATAGACGGTGTGCTGCGTCTTCTGAACCAGAGCACAGGTGAAGTAATTTCAAGTTGCGTCTTGGATGGATATTTGTCATCAAGTTCTCGAAACACGATTGGGACTACCCAAAGAATGAGAGGAACAAGGCTTTCGGAAGATACCCCCGTTGAGAGCATTCTTACTACCAGACGGCCTCCCATTACGTGCTTGACGGTTGGGATGAGGAAGGTTATCACCACGCACTACGATAAGTACATCAGAATCTGGAAATTTGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

F-box F-box-like WD40

Protein Analysis

433

Amino Acids

47.95

Weight (kDa)

8.95

Isoelectric Point (pI)

44.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004801)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G52030 AT3G52030
fragaria_vesca	FvH4_2g17910 FvH4_7g01770 FvH4_7g01770 FvH4_7g01770 FvH4_7g01770 FvH4_7g01770 FvH4_7g01770 FvH4_7g01770 FvH4_7g01770 FvH4_7g01770 FvH4_7g01770 FvH4_7g01770 FvH4_7g01770
malus_domestica	MD07G1016900.v1.1 MD07G1023200.v1.1
prunus_persica	Prupe.2G024000_v2.0.a1
pyrus_communis	pycom07g01760
rosa_chinensis	RchiOBHm_Chr1g0318361
rosa_laevigata	RLG00000030542
rosa_multiflora	Rmu_sc0002662.1_g000010 Rmu_sc0003936.1_g000037
rosa_roxburghii	Rroxscaffold_4G00329280
rosa_rugosa	Rorug01G0020800 Rorug01G0020900
rosa_samantha	Rh1AG032900 Rh1BG028800 Rh1CG031300 Rh1DG038200
rosa_wichuraiana	Rw1G002640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	814
AccB1I	GGYRCC	1 cut(s)	599
AccI	GTMKAC	1 cut(s)	987
AccII	CGCG	1 cut(s)	881
AciI	CCGC	8 cut(s)	34, 144, 205, 230, 414, 881, 1028, 1035
AclWI	GGATC	2 cut(s)	629, 913
AcsI	RAATTY	2 cut(s)	333, 1289
AfaI	GTAC	1 cut(s)	1274
AflIII	ACRYGT	1 cut(s)	990
AgsI	TTSAA	3 cut(s)	843, 877, 1089
AjnI	CCWGG	1 cut(s)	158
AluBI	AGCT	4 cut(s)	45, 450, 671, 911
AluI	AGCT	4 cut(s)	45, 450, 671, 911
Alw21I	GWGCWC	2 cut(s)	167, 1073
Alw26I	GTCTC	1 cut(s)	956
AlwI	GGATC	2 cut(s)	629, 913
AlwNI	CAGNNNCTG	2 cut(s)	914, 1284
AoxI	GGCC	2 cut(s)	728, 1211
ApeKI	GCWGC	6 cut(s)	39, 42, 411, 911, 997, 1051
ApoI	RAATTY	2 cut(s)	333, 1289
ArsI	GACNNNNNNTTYG	2 cut(s)	491, 523
AspS9I	GGNCC	2 cut(s)	257, 728
AsuHPI	GGTGA	5 cut(s)	7, 181, 428, 1088, 1246
AvaII	GGWCC	1 cut(s)	257
AxyI	CCTNAGG	2 cut(s)	639, 853
BaeGI	GKGCMC	1 cut(s)	602
BaeI	ACNNNNGTAYC	2 cut(s)	1170, 1203
BanI	GGYRCC	1 cut(s)	599
BanII	GRGCYC	1 cut(s)	887
BauI	CACGAG	2 cut(s)	672, 966
BbsI	GAAGAC	1 cut(s)	1049
Bbv12I	GWGCWC	2 cut(s)	167, 1073
BbvI	GCAGC	6 cut(s)	51, 54, 423, 898, 1009, 1038
BccI	CCATC	5 cut(s)	248, 286, 385, 656, 1097
BceAI	ACGGC	2 cut(s)	131, 1226
BcgI	CGANNNNNNTGC	4 cut(s)	183, 217, 809, 843
BciT130I	CCWGG	1 cut(s)	160
BclI	TGATCA	2 cut(s)	171, 757
BcoDI	GTCTC	1 cut(s)	956
BfaI	CTAG	2 cut(s)	237, 249
BfuAI	ACCTGC	1 cut(s)	814
BglII	AGATCT	1 cut(s)	56
BisI	GCNGC	7 cut(s)	40, 43, 205, 412, 912, 998, 1052
BlsI	GCNGC	7 cut(s)	41, 44, 206, 413, 913, 999, 1053
Bme1390I	CCNGG	1 cut(s)	160
Bme18I	GGWCC	1 cut(s)	257
BmgT120I	GGNCC	2 cut(s)	257, 728
BmiI	GGNNCC	2 cut(s)	489, 601
BmrFI	CCNGG	1 cut(s)	160
BmsI	GCATC	4 cut(s)	210, 644, 1003, 1025
BpiI	GAAGAC	1 cut(s)	1049
BpmI	CTGGAG	1 cut(s)	181
BpuEI	CTTGAG	2 cut(s)	31, 370
BsaAI	YACGTR	1 cut(s)	1224
BsaJI	CCNNGG	1 cut(s)	269
Bse118I	RCCGGY	1 cut(s)	17
Bse1I	ACTGG	4 cut(s)	73, 318, 412, 731
Bse21I	CCTNAGG	2 cut(s)	639, 853
Bse3DI	GCAATG	2 cut(s)	218, 247
BseBI	CCWGG	1 cut(s)	160
BseDI	CCNNGG	1 cut(s)	269
BseGI	GGATG	4 cut(s)	659, 667, 1108, 1245
BseMI	GCAATG	2 cut(s)	218, 247
BseMII	CTCAG	3 cut(s)	252, 630, 867
BseNI	ACTGG	4 cut(s)	73, 318, 412, 731
BseRI	GAGGAG	2 cut(s)	302, 574
BseSI	GKGCMC	1 cut(s)	602
BseXI	GCAGC	6 cut(s)	51, 54, 423, 898, 1009, 1038
BseYI	CCCAGC	1 cut(s)	725
Bsh1236I	CGCG	1 cut(s)	881
BshFI	GGCC	2 cut(s)	730, 1213
BshNI	GGYRCC	1 cut(s)	599
BsiHKAI	GWGCWC	2 cut(s)	167, 1073
BsiSI	CCGG	1 cut(s)	18
BslFI	GGGAC	4 cut(s)	61, 679, 947, 1153
BsmAI	GTCTC	1 cut(s)	956
BsmFI	GGGAC	4 cut(s)	61, 679, 947, 1153
BsmI	GAATGC	2 cut(s)	571, 1194
BsnI	GGCC	2 cut(s)	730, 1213
Bsp1286I	GDGCHC	4 cut(s)	167, 602, 887, 1073
Bsp143I	GATC	6 cut(s)	56, 171, 343, 634, 757, 905
BspACI	CCGC	8 cut(s)	34, 144, 205, 230, 414, 881, 1028, 1035
BspANI	GGCC	2 cut(s)	730, 1213
BspCNI	CTCAG	3 cut(s)	253, 631, 866
BspFNI	CGCG	1 cut(s)	881
BspLI	GGNNCC	2 cut(s)	489, 601
BspMI	ACCTGC	1 cut(s)	814
BspPI	GGATC	2 cut(s)	629, 913
BspT107I	GGYRCC	1 cut(s)	599
BsrDI	GCAATG	2 cut(s)	218, 247
BsrFI	RCCGGY	1 cut(s)	17
BsrI	ACTGG	4 cut(s)	73, 318, 412, 731
BssAI	RCCGGY	1 cut(s)	17
BssECI	CCNNGG	1 cut(s)	269
BssMI	GATC	6 cut(s)	56, 171, 343, 634, 757, 905
BssNAI	GTATAC	1 cut(s)	988
BssSI	CACGAG	2 cut(s)	672, 966
BssT1I	CCWWGG	1 cut(s)	269
Bst1107I	GTATAC	1 cut(s)	988
Bst2BI	CACGAG	2 cut(s)	672, 966
Bst2UI	CCWGG	1 cut(s)	160
Bst4CI	ACNGT	4 cut(s)	169, 378, 1046, 1234
BstBAI	YACGTR	1 cut(s)	1224
BstC8I	GCNNGC	5 cut(s)	209, 623, 723, 821, 883
BstDEI	CTNAG	6 cut(s)	183, 261, 639, 770, 853, 892
BstF5I	GGATG	4 cut(s)	659, 667, 1108, 1245
BstFNI	CGCG	1 cut(s)	881
BstKTI	GATC	6 cut(s)	59, 174, 346, 637, 760, 908
BstMAI	GTCTC	1 cut(s)	956
BstMBI	GATC	6 cut(s)	56, 171, 343, 634, 757, 905
BstMWI	GCNNNNNNNGC	3 cut(s)	727, 908, 920
BstNI	CCWGG	1 cut(s)	160
BstNSI	RCATGY	3 cut(s)	625, 725, 741
BstSCI	CCNGG	1 cut(s)	158
BstSLI	GKGCMC	1 cut(s)	602
BstUI	CGCG	1 cut(s)	881
BstV1I	GCAGC	6 cut(s)	51, 54, 423, 898, 1009, 1038
BstV2I	GAAGAC	1 cut(s)	1049
BstX2I	RGATCY	1 cut(s)	56
BstYI	RGATCY	1 cut(s)	56
BstZ17I	GTATAC	1 cut(s)	988
Bsu36I	CCTNAGG	2 cut(s)	639, 853
BsuRI	GGCC	2 cut(s)	730, 1213
BtgZI	GCGATG	1 cut(s)	584
BtsCI	GGATG	4 cut(s)	659, 667, 1108, 1245
BtsIMutI	CAGTG	2 cut(s)	383, 405
BveI	ACCTGC	1 cut(s)	814
Cac8I	GCNNGC	5 cut(s)	209, 623, 723, 821, 883
CaiI	CAGNNNCTG	2 cut(s)	914, 1284
Cfr10I	RCCGGY	1 cut(s)	17
Cfr13I	GGNCC	2 cut(s)	257, 728
CseI	GACGC	5 cut(s)	212, 293, 419, 1043, 1084
Csp6I	GTAC	1 cut(s)	1273
CviAII	CATG	4 cut(s)	622, 722, 738, 1003
CviQI	GTAC	1 cut(s)	1273
DdeI	CTNAG	6 cut(s)	183, 261, 639, 770, 853, 892
DpnI	GATC	6 cut(s)	58, 173, 345, 636, 759, 907
DpnII	GATC	6 cut(s)	56, 171, 343, 634, 757, 905
EciI	GGCGGA	3 cut(s)	49, 133, 1050
Eco130I	CCWWGG	1 cut(s)	269
Eco24I	GRGCYC	1 cut(s)	887
Eco32I	GATATC	1 cut(s)	7
Eco47I	GGWCC	1 cut(s)	257
Eco81I	CCTNAGG	2 cut(s)	639, 853
EcoRI	GAATTC	1 cut(s)	333
EcoRII	CCWGG	1 cut(s)	158
EcoRV	GATATC	1 cut(s)	7
EcoT14I	CCWWGG	1 cut(s)	269
EcoT22I	ATGCAT	4 cut(s)	554, 623, 925, 1018
EcoT38I	GRGCYC	1 cut(s)	887
ErhI	CCWWGG	1 cut(s)	269
FaeI	CATG	4 cut(s)	625, 725, 741, 1006
FaqI	GGGAC	4 cut(s)	61, 679, 947, 1153
FatI	CATG	4 cut(s)	621, 721, 737, 1002
FauI	CCCGC	2 cut(s)	223, 874
FauNDI	CATATG	1 cut(s)	554
FbaI	TGATCA	2 cut(s)	171, 757
FblI	GTMKAC	1 cut(s)	987
Fnu4HI	GCNGC	7 cut(s)	40, 43, 205, 412, 912, 998, 1052
FokI	GGATG	4 cut(s)	666, 674, 1115, 1252
FriOI	GRGCYC	1 cut(s)	887
Fsp4HI	GCNGC	7 cut(s)	40, 43, 205, 412, 912, 998, 1052
FspBI	CTAG	2 cut(s)	237, 249
GluI	GCNGC	7 cut(s)	40, 43, 205, 412, 912, 998, 1052
GsaI	CCCAGC	1 cut(s)	729
GsuI	CTGGAG	1 cut(s)	181
HaeIII	GGCC	2 cut(s)	730, 1213
HapII	CCGG	1 cut(s)	18
HgaI	GACGC	5 cut(s)	212, 293, 419, 1043, 1084
Hin1II	CATG	4 cut(s)	625, 725, 741, 1006
HincII	GTYRAC	1 cut(s)	499
HindII	GTYRAC	1 cut(s)	499
HinfI	GANTC	4 cut(s)	339, 848, 973, 1281
HpaII	CCGG	1 cut(s)	18
HphI	GGTGA	5 cut(s)	7, 181, 428, 1088, 1246
Hpy166II	GTNNAC	3 cut(s)	499, 695, 988
Hpy188I	TCNGA	6 cut(s)	63, 194, 609, 1062, 1174, 1280
Hpy188III	TCNNGA	7 cut(s)	48, 260, 479, 638, 804, 1125, 1285
Hpy8I	GTNNAC	3 cut(s)	499, 695, 988
Hpy99I	CGWCG	1 cut(s)	1024
HpyAV	CCTTC	3 cut(s)	320, 604, 1240
HpyCH4III	ACNGT	4 cut(s)	169, 378, 1046, 1234
HpyCH4IV	ACGT	4 cut(s)	936, 992, 1022, 1223
HpyCH4V	TGCA	7 cut(s)	99, 153, 552, 621, 923, 997, 1016
HpyF10VI	GCNNNNNNNGC	3 cut(s)	727, 908, 920
HpyF3I	CTNAG	6 cut(s)	183, 261, 639, 770, 853, 892
HpySE526I	ACGT	4 cut(s)	936, 992, 1022, 1223
Hsp92II	CATG	4 cut(s)	625, 725, 741, 1006
Ksp22I	TGATCA	2 cut(s)	171, 757
Kzo9I	GATC	6 cut(s)	56, 171, 343, 634, 757, 905
LmnI	GCTCC	4 cut(s)	36, 162, 195, 301
Lsp1109I	GCAGC	6 cut(s)	51, 54, 423, 898, 1009, 1038
LweI	GCATC	4 cut(s)	210, 644, 1003, 1025
MaeI	CTAG	2 cut(s)	237, 249
MaeII	ACGT	4 cut(s)	936, 992, 1022, 1223
MaeIII	GTNAC	4 cut(s)	318, 356, 626, 733
MalI	GATC	6 cut(s)	58, 173, 345, 636, 759, 907
MboI	GATC	6 cut(s)	56, 171, 343, 634, 757, 905
MboII	GAAGA	4 cut(s)	97, 115, 1049, 1187
MflI	RGATCY	1 cut(s)	56
MhlI	GDGCHC	4 cut(s)	167, 602, 887, 1073
MluCI	AATT	4 cut(s)	333, 833, 1083, 1289
MlyI	GAGTC	2 cut(s)	348, 982
MmeI	TCCRAC	4 cut(s)	86, 106, 352, 631
Mph1103I	ATGCAT	4 cut(s)	554, 623, 925, 1018
MseI	TTAA	1 cut(s)	836
MslI	CAYNNNNRTG	1 cut(s)	742
MspA1I	CMGCKG	2 cut(s)	414, 911
MspI	CCGG	1 cut(s)	18
MspR9I	CCNGG	1 cut(s)	160
Mva1269I	GAATGC	2 cut(s)	571, 1194
MvaI	CCWGG	1 cut(s)	160
MvnI	CGCG	1 cut(s)	881
MwoI	GCNNNNNNNGC	3 cut(s)	727, 908, 920
NdeI	CATATG	1 cut(s)	554
NdeII	GATC	6 cut(s)	56, 171, 343, 634, 757, 905
NlaIII	CATG	4 cut(s)	625, 725, 741, 1006
NlaIV	GGNNCC	2 cut(s)	489, 601
NmuCI	GTSAC	1 cut(s)	356
NsiI	ATGCAT	4 cut(s)	554, 623, 925, 1018
NspI	RCATGY	3 cut(s)	625, 725, 741
PaeI	GCATGC	2 cut(s)	625, 725
PcsI	WCGNNNNNNNCGW	1 cut(s)	123
PctI	GAATGC	2 cut(s)	571, 1194
PfeI	GAWTC	2 cut(s)	848, 1281
PflFI	GACNNNGTC	1 cut(s)	378
PkrI	GCNGC	7 cut(s)	41, 44, 206, 413, 913, 999, 1053
PleI	GAGTC	2 cut(s)	347, 981
PpsI	GAGTC	2 cut(s)	347, 981
Ppu21I	YACGTR	1 cut(s)	1224
Psp6I	CCWGG	1 cut(s)	158
PspFI	CCCAGC	1 cut(s)	725
PspGI	CCWGG	1 cut(s)	158
PspN4I	GGNNCC	2 cut(s)	489, 601
PspPI	GGNCC	2 cut(s)	257, 728
PsrI	GAACNNNNNNTAC	2 cut(s)	685, 717
PstNI	CAGNNNCTG	2 cut(s)	914, 1284
PsuI	RGATCY	1 cut(s)	56
PsyI	GACNNNGTC	1 cut(s)	378
PvuII	CAGCTG	1 cut(s)	911
RsaI	GTAC	1 cut(s)	1274
RsaNI	GTAC	1 cut(s)	1273
RseI	CAYNNNNRTG	1 cut(s)	742
SaqAI	TTAA	1 cut(s)	836
SatI	GCNGC	7 cut(s)	40, 43, 205, 412, 912, 998, 1052
Sau3AI	GATC	6 cut(s)	56, 171, 343, 634, 757, 905
Sau96I	GGNCC	2 cut(s)	257, 728
SchI	GAGTC	2 cut(s)	348, 982
ScrFI	CCNGG	1 cut(s)	160
SduI	GDGCHC	4 cut(s)	167, 602, 887, 1073
SfaNI	GCATC	4 cut(s)	210, 644, 1003, 1025
SgrAI	CRCCGGYG	1 cut(s)	17
SinI	GGWCC	1 cut(s)	257
SmiMI	CAYNNNNRTG	1 cut(s)	742
SmlI	CTYRAG	2 cut(s)	46, 349
SmoI	CTYRAG	2 cut(s)	46, 349
SphI	GCATGC	2 cut(s)	625, 725
Sse9I	AATT	4 cut(s)	333, 833, 1083, 1289
SsiI	CCGC	8 cut(s)	34, 144, 205, 230, 414, 881, 1028, 1035
SspMI	CTAG	2 cut(s)	237, 249
StyD4I	CCNGG	1 cut(s)	158
StyI	CCWWGG	1 cut(s)	269
TaaI	ACNGT	4 cut(s)	169, 378, 1046, 1234
TaiI	ACGT	4 cut(s)	939, 995, 1025, 1226
TaqI	TCGA	8 cut(s)	117, 126, 331, 337, 342, 382, 1019, 1126
TasI	AATT	4 cut(s)	333, 833, 1083, 1289
TatI	WGTACW	1 cut(s)	1272
TauI	GCSGC	1 cut(s)	207
TfiI	GAWTC	2 cut(s)	848, 1281
Tru1I	TTAA	1 cut(s)	836
Tru9I	TTAA	1 cut(s)	836
TscAI	CASTG	2 cut(s)	383, 412
TseFI	GTSAC	1 cut(s)	356
TseI	GCWGC	6 cut(s)	39, 42, 411, 911, 997, 1051
Tsp45I	GTSAC	1 cut(s)	356
TspDTI	ATGAA	4 cut(s)	528, 768, 801, 962
TspRI	CASTG	2 cut(s)	383, 412
Tth111I	GACNNNGTC	1 cut(s)	378
VpaK11BI	GGWCC	1 cut(s)	257
XapI	RAATTY	2 cut(s)	333, 1289
XceI	RCATGY	3 cut(s)	625, 725, 741
XmiI	GTMKAC	1 cut(s)	987
XspI	CTAG	2 cut(s)	237, 249
Zsp2I	ATGCAT	4 cut(s)	554, 623, 925, 1018

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.